genome_name
stringlengths 15
15
| taxid
int64 7
2.75M
| bacformer_genome_embedding
sequencelengths 480
480
| madin_categorical_gram_stain
stringclasses 2
values | madin_categorical_metabolism
stringclasses 6
values | madin_categorical_motility_binary
stringclasses 2
values | madin_categorical_motility_type
stringclasses 3
values | madin_categorical_sporulation
stringclasses 2
values | madin_categorical_range_tmp
stringclasses 7
values | madin_categorical_range_salinity
stringclasses 7
values | madin_categorical_cell_shape
stringclasses 13
values | madin_categorical_isolation_source
stringclasses 70
values | madin_quantitative_d1_lo
float64 0.1
10
⌀ | madin_quantitative_d1_up
float64 0.15
10
⌀ | madin_quantitative_d2_lo
float64 0.1
51
⌀ | madin_quantitative_d2_up
float64 0.5
66
⌀ | madin_quantitative_optimum_tmp
float64 0
102
⌀ | madin_quantitative_optimum_ph
float64 0.75
11.3
⌀ | madin_quantitative_growth_tmp
float64 3
85
⌀ | madin_carbsubs_cellobiose
float64 0
1
⌀ | madin_carbsubs_fructose
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1
⌀ | madin_carbsubs_galactose
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1
⌀ | madin_carbsubs_glucose
float64 0
1
⌀ | madin_carbsubs_glycerol
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1
⌀ | madin_carbsubs_lactose
float64 0
1
⌀ | madin_carbsubs_maltose
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1
⌀ | madin_carbsubs_mannose
float64 0
1
⌀ | madin_carbsubs_N-acetylgulcosamine
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⌀ | madin_carbsubs_ribose
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1
⌀ | madin_carbsubs_salicin
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1
⌀ | madin_carbsubs_trehalose
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⌀ | madin_carbsubs_2-ketogluconate
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1
⌀ | madin_carbsubs_5-ketogluconate
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1
⌀ | madin_carbsubs_arabinose
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1
⌀ | madin_carbsubs_ethanol
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1
⌀ | madin_carbsubs_mannitol
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1
⌀ | madin_carbsubs_melibiose
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1
⌀ | madin_carbsubs_raffinose
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1
⌀ | madin_carbsubs_rhamnose
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⌀ | madin_carbsubs_sorbitol
float64 0
1
⌀ | madin_carbsubs_sucrose
float64 0
1
⌀ | madin_carbsubs_xylose
float64 0
1
⌀ | madin_carbsubs_adonitol
float64 0
1
⌀ | madin_carbsubs_alanine
float64 0
1
⌀ | madin_carbsubs_arabitol
float64 0
1
⌀ | madin_carbsubs_arginine
float64 0
1
⌀ | madin_carbsubs_citrate
float64 0
1
⌀ | madin_carbsubs_dextrin
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1
⌀ | madin_carbsubs_fucose
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1
⌀ | madin_carbsubs_gelatin
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1
⌀ | madin_carbsubs_histidine
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⌀ | madin_carbsubs_lactate
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⌀ | madin_carbsubs_myo-inositol
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1
⌀ | madin_carbsubs_ornithine
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1
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1
⌀ | madin_carbsubs_serine
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1
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float64 0
1
⌀ | madin_carbsubs_Tween 20
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1
⌀ | madin_carbsubs_Tween 80
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1
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1
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1
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1
⌀ | madin_carbsubs_aspartate
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1
⌀ | madin_carbsubs_glutamate
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1
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1
⌀ | madin_carbsubs_propionate
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1
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1
⌀ | madin_carbsubs_pyruvate
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1
⌀ | madin_carbsubs_asparagine
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1
⌀ | madin_carbsubs_inosine
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1
⌀ | madin_carbsubs_methyl pyruvate
float64 0
1
⌀ | madin_carbsubs_thymidine
float64 0
1
⌀ | madin_carbsubs_Tween 40
float64 0
1
⌀ | madin_carbsubs_uridine
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1
⌀ | madin_carbsubs_3-hydroxybutyrate
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1
⌀ | madin_carbsubs_valerate
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1
⌀ | madin_carbsubs_glucosamine
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1
⌀ | madin_carbsubs_urea
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1
⌀ | madin_carbsubs_methyl beta-D-glucoside
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1
⌀ | madin_carbsubs_malonate
float64 0
1
⌀ | madin_carbsubs_galacturonic acid
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1
⌀ | madin_carbsubs_adipate
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1
⌀ | madin_carbsubs_pyruvic acid methyl ester
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1
⌀ | madin_carbsubs_alpha-cyclodextrin
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1
⌀ | madin_carbsubs_glycogen
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1
⌀ | madin_carbsubs_leucine
float64 0
1
⌀ | madin_carbsubs_threonine
float64 0
1
⌀ | madin_carbsubs_phenylalanine
float64 0
1
⌀ | madin_carbsubs_formic acid
float64 0
1
⌀ | madin_carbsubs_phenylacetate
float64 0
1
⌀ | madin_carbsubs_glycine
float64 0
1
⌀ | madin_carbsubs_Tween 60
float64 0
1
⌀ | madin_carbsubs_alaninamide
float64 0
1
⌀ | madin_carbsubs_quinic acid
float64 0
1
⌀ | madin_carbsubs_alpha-ketovaleric acid
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⌀ | gideon_Adonitol
stringclasses 2
values | gideon_Salicin
stringclasses 2
values | gideon_Catalase
stringclasses 2
values | gideon_Gelatin hydrolysis
stringclasses 2
values | gideon_Coccus
stringclasses 2
values | gideon_Motile
stringclasses 2
values | gideon_Coccus - pairs or chains predominate
stringclasses 2
values | gideon_Maltose
stringclasses 2
values | gideon_Growth on ordinary blood agar
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values | gideon_Melibiose
stringclasses 2
values | gideon_Spore formation
stringclasses 2
values | gideon_Yellow pigment
stringclasses 2
values | gideon_Nitrate to nitrite
stringclasses 2
values | gideon_Gram positive
stringclasses 2
values | gideon_Anaerobe
stringclasses 2
values | gideon_Glucose oxidizer
stringclasses 2
values | gideon_Gram negative
stringclasses 2
values | gideon_L-Arabinose
stringclasses 2
values | gideon_Gas from glucose
stringclasses 2
values | gideon_Lactose
stringclasses 2
values | gideon_Raffinose
stringclasses 2
values | gideon_L-Rhamnose
stringclasses 2
values | gideon_Bacillus or coccobacillus
stringclasses 2
values | gideon_Indole
stringclasses 2
values | gideon_D-Xylose
stringclasses 2
values | gideon_Growth on MacConkey agar
stringclasses 2
values | gideon_Citrate
stringclasses 2
values | gideon_Urea hydrolysis
stringclasses 2
values | gideon_Glycerol
stringclasses 2
values | gideon_D-Mannitol
stringclasses 2
values | gideon_Trehalose
stringclasses 2
values | gideon_Arginine dihydrolase
stringclasses 2
values | gideon_myo-Inositol
stringclasses 2
values | gideon_ONPG (beta galactosidase)
stringclasses 2
values | gideon_D-Mannose
stringclasses 2
values | gideon_Glucose fermenter
stringclasses 2
values | gideon_Aerobe
stringclasses 2
values | gideon_Oxidase
stringclasses 2
values | gideon_Beta hemolysis
stringclasses 2
values | gideon_Hydrogen sulfide
stringclasses 2
values | gideon_Branching filaments present
stringclasses 2
values | gideon_Facultative
stringclasses 2
values | gideon_Esculin hydrolysis
stringclasses 2
values | gideon_Sucrose
stringclasses 2
values | gideon_D-Sorbitol
stringclasses 2
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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] | positive | aerobic | no | null | no | mesophilic | null | coccus | host | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
GCF_007992315.1 | 1,599 | [
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] | null | facultative | no | null | no | null | null | bacillus | water_fresh_alkaline | 0.5 | 0.9 | 3.5 | 4.7 | 28 | null | null | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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GCF_007992075.1 | 478,448 | [
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GCF_007991495.1 | 582,850 | [
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] | positive | anaerobic | yes | null | null | mesophilic | null | bacillus | null | null | null | null | null | 27.5 | null | 30 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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GCF_007991335.1 | 360,184 | [
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] | positive | obligate aerobic | null | null | yes | mesophilic | null | bacillus | sediment_marine | 1.7 | null | 2.9 | null | 30 | 7.25 | 30 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
GCF_007992535.1 | 931,535 | [
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] | positive | obligate aerobic | yes | null | null | mesophilic | null | bacillus | soil | 1.5 | null | 6 | null | 25 | 8.5 | 25 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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GCF_007991515.1 | 582,851 | [
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] | positive | null | yes | null | null | mesophilic | null | bacillus | null | null | null | null | null | 32.5 | null | 30 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
GCF_007991655.1 | 670,293 | [
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GCF_000685335.1 | 1,280 | [
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] | positive | null | null | null | null | mesophilic | null | coccus | null | null | null | null | null | 37 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
GCF_000685355.1 | 1,479,651 | [
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] | positive | aerobic | yes | null | yes | mesophilic | non-halophilic | bacillus | null | null | null | null | null | 37 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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] | null | anaerobic | null | null | no | null | null | null | wastewater | null | null | null | null | 55 | 7 | 55 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null |
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