metadata

license: apache-2.0
pretty_name: >-
  Small sample dataset for whole-bacterial genomes clustering (Protein
  sequences)
tags:
  - biology
  - bacteria
  - prokaryotes
  - protein
  - bacformer
  - clusterings
  - strain
size_categories:
  - n<1K

Small sample dataset for whole-bacterial genomes clustering (protein sequences)

A small sample dataset for testing strain clustering by embedding protein sequences.

The genome protein sequences have been extracted from MGnify. Each row contains a set of contigs with protein sequences present in the genome. Each contig is a list of proteins ordered by their location on the chromosome or plasmid.

Usage

See the Bacformer strain clustering tutorial for an example on how to use the dataset.