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license: apache-2.0
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---
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license: apache-2.0
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pretty_name: >-
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Small sample dataset for whole-bacterial genomes clustering (Protein
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sequences)
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tags:
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- biology
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- bacteria
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- prokaryotes
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- protein
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- bacformer
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- clusterings
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- strain
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size_categories:
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- n<1K
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# Small sample dataset for whole-bacterial genomes clustering (protein sequences)
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A small sample dataset for testing strain clustering by embedding protein sequences.
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The genome protein sequences have been extracted from [MGnify](https://www.ebi.ac.uk/metagenomics). Each row contains a set of contigs with protein sequences present in the genome.
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Each contig is a list of proteins ordered by their location on the chromosome or plasmid.
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## Usage
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See the [Bacformer strain clustering tutorial](https://github.com/macwiatrak/Bacformer/blob/main/tutorials/strain_clustering_tutorial.ipynb) for an example on how to use the dataset.
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