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- ---
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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ ---
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+ license: apache-2.0
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+ pretty_name: >-
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+ Small sample dataset for whole-bacterial genomes clustering (Protein
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+ sequences)
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+ tags:
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+ - biology
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+ - bacteria
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+ - prokaryotes
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+ - protein
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+ - bacformer
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+ - clusterings
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+ - strain
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+ size_categories:
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+ - n<1K
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+ ---
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+
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+ # Small sample dataset for whole-bacterial genomes clustering (protein sequences)
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+ A small sample dataset for testing strain clustering by embedding protein sequences.
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+
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+ The genome protein sequences have been extracted from [MGnify](https://www.ebi.ac.uk/metagenomics). Each row contains a set of contigs with protein sequences present in the genome.
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+ Each contig is a list of proteins ordered by their location on the chromosome or plasmid.
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+
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+ ## Usage
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+
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+ See the [Bacformer strain clustering tutorial](https://github.com/macwiatrak/Bacformer/blob/main/tutorials/strain_clustering_tutorial.ipynb) for an example on how to use the dataset.
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