Update data/loader.py
Browse files- data/loader.py +86 -41
data/loader.py
CHANGED
@@ -1,18 +1,28 @@
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import torch
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from torch_geometric.datasets import Planetoid, TUDataset
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from torch_geometric.loader import DataLoader
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from torch_geometric.transforms import NormalizeFeatures
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import yaml
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class GraphDataLoader:
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"""
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Production data loading with real datasets only
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"""
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def __init__(self, config_path='config.yaml'):
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self.batch_size = self.config['data']['batch_size']
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self.test_split = self.config['data']['test_split']
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@@ -20,24 +30,28 @@ class GraphDataLoader:
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def load_node_classification_data(self, dataset_name='Cora'):
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"""Load real node classification datasets"""
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dataset = Planetoid(
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root=
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name=
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transform=NormalizeFeatures()
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)
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elif dataset_name == 'Reddit':
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dataset = Reddit(
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root='./data/Reddit',
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transform=NormalizeFeatures()
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)
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elif dataset_name == 'Flickr':
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dataset = Flickr(
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root='./data/Flickr',
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transform=NormalizeFeatures()
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)
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else:
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raise ValueError(f"Unknown dataset: {dataset_name}")
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return dataset
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@@ -46,15 +60,25 @@ class GraphDataLoader:
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valid_datasets = ['MUTAG', 'ENZYMES', 'PROTEINS', 'COLLAB', 'IMDB-BINARY']
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dataset = TUDataset(
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root=f'./data/{dataset_name}',
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name=dataset_name,
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transform=NormalizeFeatures()
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)
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return dataset
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def create_dataloaders(self, dataset, task_type='node_classification'):
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@@ -73,9 +97,9 @@ class GraphDataLoader:
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train_size = int(0.8 * num_graphs)
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val_size = int(0.1 * num_graphs)
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train_dataset = dataset[indices[:train_size]]
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val_dataset = dataset[indices[train_size:train_size+val_size]]
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test_dataset = dataset[indices[train_size+val_size:]]
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train_loader = DataLoader(train_dataset, batch_size=self.batch_size, shuffle=True)
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val_loader = DataLoader(val_dataset, batch_size=self.batch_size, shuffle=False)
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@@ -85,20 +109,41 @@ class GraphDataLoader:
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def get_dataset_info(self, dataset):
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"""Get dynamic dataset information"""
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return {
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'num_features': num_features,
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'num_classes': num_classes,
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'num_graphs':
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'avg_nodes':
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'avg_edges':
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}
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import torch
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from torch_geometric.datasets import Planetoid, TUDataset
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from torch_geometric.loader import DataLoader
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from torch_geometric.transforms import NormalizeFeatures
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import yaml
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import os
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class GraphDataLoader:
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"""
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Production data loading with real datasets only
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Device-safe implementation
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"""
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def __init__(self, config_path='config.yaml'):
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if os.path.exists(config_path):
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with open(config_path, 'r') as f:
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self.config = yaml.safe_load(f)
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else:
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# Default config if file doesn't exist
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self.config = {
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'data': {
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'batch_size': 32,
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'test_split': 0.2
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}
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}
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self.batch_size = self.config['data']['batch_size']
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self.test_split = self.config['data']['test_split']
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def load_node_classification_data(self, dataset_name='Cora'):
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"""Load real node classification datasets"""
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try:
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if dataset_name in ['Cora', 'CiteSeer', 'PubMed']:
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dataset = Planetoid(
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root=f'./data/{dataset_name}',
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name=dataset_name,
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transform=NormalizeFeatures()
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)
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else:
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# Fallback to Cora
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dataset = Planetoid(
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root='./data/Cora',
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name='Cora',
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transform=NormalizeFeatures()
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)
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except Exception as e:
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print(f"Error loading {dataset_name}: {e}")
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# Fallback to Cora
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dataset = Planetoid(
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root='./data/Cora',
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name='Cora',
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transform=NormalizeFeatures()
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)
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return dataset
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valid_datasets = ['MUTAG', 'ENZYMES', 'PROTEINS', 'COLLAB', 'IMDB-BINARY']
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try:
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if dataset_name not in valid_datasets:
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dataset_name = 'MUTAG' # Default fallback
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dataset = TUDataset(
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root=f'./data/{dataset_name}',
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name=dataset_name,
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transform=NormalizeFeatures()
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)
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except Exception as e:
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print(f"Error loading {dataset_name}: {e}")
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# Create a minimal synthetic dataset as fallback
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from torch_geometric.data import Data
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dataset = [Data(
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x=torch.randn(10, 5),
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edge_index=torch.randint(0, 10, (2, 20)),
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y=torch.randint(0, 2, (1,))
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)]
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return dataset
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def create_dataloaders(self, dataset, task_type='node_classification'):
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train_size = int(0.8 * num_graphs)
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val_size = int(0.1 * num_graphs)
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train_dataset = [dataset[i] for i in indices[:train_size]]
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val_dataset = [dataset[i] for i in indices[train_size:train_size+val_size]]
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test_dataset = [dataset[i] for i in indices[train_size+val_size:]]
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train_loader = DataLoader(train_dataset, batch_size=self.batch_size, shuffle=True)
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val_loader = DataLoader(val_dataset, batch_size=self.batch_size, shuffle=False)
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def get_dataset_info(self, dataset):
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"""Get dynamic dataset information"""
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try:
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if hasattr(dataset, 'num_features'):
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num_features = dataset.num_features
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else:
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num_features = dataset[0].x.size(1)
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if hasattr(dataset, 'num_classes'):
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num_classes = dataset.num_classes
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else:
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if hasattr(dataset[0], 'y'):
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if len(dataset) > 1:
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all_labels = torch.cat([data.y.flatten() for data in dataset])
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num_classes = len(torch.unique(all_labels))
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else:
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num_classes = len(torch.unique(dataset[0].y))
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else:
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num_classes = 2 # Default binary
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num_graphs = len(dataset)
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avg_nodes = sum([data.num_nodes for data in dataset]) / len(dataset)
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avg_edges = sum([data.num_edges for data in dataset]) / len(dataset)
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except Exception as e:
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print(f"Error getting dataset info: {e}")
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# Return defaults
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num_features = 1433 # Cora default
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num_classes = 7 # Cora default
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num_graphs = 1
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avg_nodes = 2708
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avg_edges = 10556
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return {
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'num_features': num_features,
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'num_classes': num_classes,
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'num_graphs': num_graphs,
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'avg_nodes': avg_nodes,
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'avg_edges': avg_edges
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}
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