app.py

# First, install required packages
#!pip install gradio pandas numpy scikit-learn

import gradio as gr
import pandas as pd
import numpy as np
from sklearn.preprocessing import StandardScaler
import json
from datetime import datetime, timedelta

class SimplePrecisionMedicineSystem:
    def __init__(self):
        self.scaler = StandardScaler()
        
    def calculate_risk_score(self, genetic_score, lifestyle_score, age, symptom_severity):
        """Calculate overall risk score"""
        try:
            # Normalize age to 0-1 range (assuming max age of 100)
            age_normalized = age / 100.0
            
            # Weight factors (can be adjusted)
            weights = {
                'genetic': 0.4,
                'lifestyle': 0.3,
                'age': 0.2,
                'symptoms': 0.1
            }
            
            # Calculate weighted risk score
            risk_score = (
                genetic_score * weights['genetic'] +
                (1 - lifestyle_score) * weights['lifestyle'] +  # Invert lifestyle score
                age_normalized * weights['age'] +
                (symptom_severity / 10) * weights['symptoms']  # Normalize to 0-1
            )
            
            return round(risk_score, 2)
        except Exception as e:
            print(f"Error in risk calculation: {str(e)}")
            return 0.5  # Return middle value if error occurs

    def get_treatment_recommendation(self, risk_score, current_medication, symptom_severity):
        """Generate treatment recommendations based on risk score and symptoms"""
        try:
            base_recommendations = []
            
            # Risk-based recommendations
            if risk_score < 0.3:
                base_recommendations.append("Low risk profile - Continue monitoring")
            elif risk_score < 0.6:
                base_recommendations.append("Moderate risk - Regular check-ups recommended")
            else:
                base_recommendations.append("High risk - Intensive monitoring required")

            # Symptom-based recommendations
            if symptom_severity <= 3:
                base_recommendations.append("Mild symptoms - Maintain current treatment")
            elif symptom_severity <= 7:
                base_recommendations.append("Moderate symptoms - Consider treatment adjustment")
            else:
                base_recommendations.append("Severe symptoms - Immediate medical review required")

            # Medication-based recommendations
            if current_medication.lower().strip() in ['none', 'no', '']:
                if risk_score > 0.5:
                    base_recommendations.append("Consider initiating preventive treatment")
            else:
                base_recommendations.append("Review current medications at next appointment")

            return base_recommendations
        except Exception as e:
            print(f"Error in treatment recommendation: {str(e)}")
            return ["Unable to generate recommendations due to error"]

    def generate_report(self, patient_data):
        """Generate patient report"""
        try:
            # Calculate risk score
            risk_score = self.calculate_risk_score(
                patient_data['genetic_score'],
                patient_data['lifestyle_score'],
                patient_data['age'],
                patient_data['symptom_severity']
            )
            
            # Get treatment recommendations
            recommendations = self.get_treatment_recommendation(
                risk_score,
                patient_data['current_medication'],
                patient_data['symptom_severity']
            )
            
            # Create report
            report = {
                "Patient Information": {
                    "Age": patient_data['age'],
                    "Gender": patient_data['gender'],
                    "Current Medications": patient_data['current_medication']
                },
                "Risk Assessment": {
                    "Overall Risk Score": risk_score,
                    "Risk Category": "High" if risk_score > 0.6 else "Moderate" if risk_score > 0.3 else "Low",
                    "Genetic Risk": patient_data['genetic_score'],
                    "Lifestyle Score": patient_data['lifestyle_score']
                },
                "Current Status": {
                    "Symptom Severity": f"{patient_data['symptom_severity']}/10",
                },
                "Recommendations": recommendations,
                "Next Steps": {
                    "Follow-up": "Within 1 week" if risk_score > 0.6 else "Within 1 month" if risk_score > 0.3 else "Within 3 months",
                    "Monitoring": "Daily" if patient_data['symptom_severity'] > 7 else "Weekly" if patient_data['symptom_severity'] > 4 else "Monthly"
                },
                "Report Generated": datetime.now().strftime("%Y-%m-%d %H:%M:%S")
            }
            
            return json.dumps(report, indent=2)
        except Exception as e:
            print(f"Error in report generation: {str(e)}")
            return json.dumps({"error": "Failed to generate report", "message": str(e)})

def create_gradio_interface():
    """Create Gradio interface"""
    system = SimplePrecisionMedicineSystem()
    
    def process_patient(age, gender, genetic_score, lifestyle_score, current_medication, symptom_severity):
        try:
            # Create patient data dictionary
            patient_data = {
                'age': age,
                'gender': gender,
                'genetic_score': genetic_score,
                'lifestyle_score': lifestyle_score,
                'current_medication': current_medication,
                'symptom_severity': symptom_severity
            }
            
            # Generate report
            return system.generate_report(patient_data)
            
        except Exception as e:
            return json.dumps({
                "error": "An error occurred while processing the patient data",
                "details": str(e)
            }, indent=2)

    # Create interface
    iface = gr.Interface(
        fn=process_patient,
        inputs=[
            gr.Number(label="Age", minimum=0, maximum=120),
            gr.Dropdown(choices=["Male", "Female", "Other"], label="Gender"),
            gr.Slider(minimum=0, maximum=1, step=0.1, label="Genetic Risk Score (0-1)"),
            gr.Slider(minimum=0, maximum=1, step=0.1, label="Lifestyle Score (0-1)"),
            gr.Textbox(label="Current Medications (comma-separated or 'None')"),
            gr.Slider(minimum=0, maximum=10, step=1, label="Symptom Severity (0-10)")
        ],
        outputs=gr.JSON(label="Medical Report"),
        title="Precision Medicine System",
        description="Enter patient information to generate personalized medical recommendations",
        examples=[
            [45, "Female", 0.6, 0.7, "Metformin 500mg, Lisinopril 10mg", 4],
            [72, "Male", 0.8, 0.4, "Warfarin 5mg, Atorvastatin 40mg", 7],
            [28, "Other", 0.2, 0.9, "None", 2]
        ]
    )
    return iface

# Launch the interface
if __name__ == "__main__":
    interface = create_gradio_interface()
    interface.launch()