nferruz/ProtGPT2 · Discussions

#46 opened 6 months ago by

Jonathanlin

Introducing protgpt2-distilled-tiny: A Leaner, Faster Approach to Protein Sequence Generation

#45 opened 6 months ago by

how can i fine tune the model on the colab?

#43 opened 8 months ago by

TomLong

How can I generate a new sequence by fixing some of the residues ?

#42 opened 9 months ago by

polytide

Problems encountered when fine-tuning model validation

#41 opened 9 months ago by

ysy2002

How to change the first generate amino acid?

#40 opened 10 months ago by

Jonathanlin

How to create embeddings using ProtGPT2

#39 opened 10 months ago by

PurvaTijare

Inquiry on ProtGPT2 Model Performance and Fine-Tuning Evaluation

#38 opened 11 months ago by

how to define the compute_metrics function in fine-tuning

#37 opened 12 months ago by

Biohebb

Resources required for fine tuning Protgpt2

8

#36 opened 12 months ago by

ChetnaA

Questions regarding fine tuning protgpt2

#35 opened 12 months ago by

xenidisv

How to fine-tune with dataset of multiple .csv.gz files and had some features or labels? Exemple with OAS database (antibody db)

5

#34 opened about 1 year ago by

BioinfoProteo

Help with training dataset output and validation .txts

#33 opened about 1 year ago by

miraclewizard

Predicting end of sequence

#31 opened over 1 year ago by

pipparichter

Adding `safetensors` variant of this model

#30 opened over 1 year ago by

SFconvertbot

How to work training and generating on GPU environment

#29 opened over 1 year ago by

Jonathanlin

Model fine-tuning does not work well

#28 opened over 1 year ago by

rqh

Discrepancy between num_samples when fine tuning and the number of samples in my training file

#27 opened over 1 year ago by

codev

Inquiry Regarding ProtGPT2 Prompt and Output Length

#26 opened over 1 year ago by

Making ProtGPT2-medium and ProtGPT2-small available?

#25 opened over 1 year ago by

Example of `training.txt` and `validation.txt` for fine tuning ProtGPT2

4

#24 opened over 1 year ago by

There is an 'X' in generated sequences.

#23 opened over 1 year ago by

SweetGAN

Colab for sharing

#22 opened over 1 year ago by

ezequielsobrino

Conserving the end of a protein sequence

#21 opened over 1 year ago by

codev

New line characters in generated sequences

#20 opened over 1 year ago by

emrecicekyurt

Recommended GPU architecture for fine tuning

7

#19 opened over 1 year ago by

codev

Adding `safetensors` variant of this model

#18 opened over 1 year ago by

SFconvertbot

More examples how to generate de novo proteins

#17 opened over 1 year ago by

MartinMaon

Generate mutation by define specific stations

#15 opened almost 2 years ago by

Aviv

Basic sequence generation usage

#13 opened almost 2 years ago by

kevinky

Embedding sequences

4

#12 opened almost 2 years ago by

flpgrz

Unable to finetune ProtGPT2 model

#11 opened almost 2 years ago by

Sirisha

Finetuning ProtGPT2 on a set of user-defined sequences

4

#9 opened almost 2 years ago by

SweetGAN

Generation of sequences based on one input sequence

#8 opened almost 2 years ago by

0jj0

Lengths of designed proteins

#6 opened about 2 years ago by

SenyorDrew

Generating Sequences Pre-conditioned on Embeddings from MSA Transformer

6

#5 opened about 2 years ago by

hunarbatra

ProtGPT2 QA Task for Mutation Generation

#3 opened about 2 years ago by

hunarbatra

Minimal number of sequences for fine tuning

#2 opened over 2 years ago by

ShanGao

End-to-end example for AA sequence vectorization