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AIDO.Tissue-60M

PyTorch
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@@ -9,12 +9,14 @@ niche label type prediction: the task is to predict niche type of each cell give
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  | Model | F1-score |
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  | -------- | ------- |
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  | AIDO.Tissue | 0.67 |
 
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  | Nicheformer | 0.50 |
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  cell density prediction: the task is to predict neighbor cell number of a target cell given the expression profiles.
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  | Task | Mean absolute error | R square |
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  | -------- | ------- | ------- |
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  | AIDO.Tissue | 4.44 | 0.55|
 
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  | Nicheformer | 7.08 | -0.07|
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  # Finetuning AIDO.Tissue for spatial single cell downstream tasks
 
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  | Model | F1-score |
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  | -------- | ------- |
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  | AIDO.Tissue | 0.67 |
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+ | scFoundation | 0.53 |
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  | Nicheformer | 0.50 |
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  cell density prediction: the task is to predict neighbor cell number of a target cell given the expression profiles.
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  | Task | Mean absolute error | R square |
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  | -------- | ------- | ------- |
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  | AIDO.Tissue | 4.44 | 0.55|
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+ | scFoundation | 6.17 | 0.11 |
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  | Nicheformer | 7.08 | -0.07|
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  # Finetuning AIDO.Tissue for spatial single cell downstream tasks