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README.md
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@@ -3,15 +3,15 @@ The AIDO.Tissue model is develpoed on spatial single-cell transcriptomic data. T
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# Results
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We evelauted the model on two spatial data task, including predicting niche label and cell density.
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niche label type prediction:
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| Model | F1-score |
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| -------- | ------- |
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| AIDO.Tissue | 0.67 |
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| Nicheformer | 0.50 |
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cell density prediction:
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| Task | Mean absolute error | R square |
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| -------- | ------- | ------- |
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| AIDO.Tissue | 4.44 | 0.55|
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# Results
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We evelauted the model on two spatial data task, including predicting niche label and cell density. Please refer to [AIDO.tissue-downstream-tasks](https://huggingface.co/datasets/genbio-ai/tissue-downstream-tasks/blob/main/README.md) for more details. Below shows the brief description and evaluation metrics.
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niche label type prediction: the task is to predict niche type of each cell given spatial expression data (in total 6 types).
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| Model | F1-score |
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| -------- | ------- |
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| AIDO.Tissue | 0.67 |
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| Nicheformer | 0.50 |
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cell density prediction: the task is to predict neighbor cell number of a target cell given the expression profiles.
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| Task | Mean absolute error | R square |
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| -------- | ------- | ------- |
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| AIDO.Tissue | 4.44 | 0.55|
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