wanglab/prochipdb_dbp

Dataset Organization

The ProChipDB dataset is organized by species, protein/condition, and context length. Each species has multiple subsets corresponding to different context lengths.

Instructions to Download

You can load a dataset using HF's API, with an example below.

from datasets import load_dataset

# Load E. coli dataset for Ferric Uptake Regulator (Fur) with context length of 1024 bp
dbp_data = load_dataset("wanglab/prochipdb_dbp", 'e_coli_fur_Fe_1024')
# Access the train data for a specific context length, species and TF
train_data = dbp_data['train']