Kmer Tokenization Strategy
Collection
11 items
•
Updated
Dataset Viewer
name
stringlengths 10
52
| sequence
stringlengths 160
3.22k
| label
int64 0
2
|
|---|---|---|
SRR22881465_donor_known::1:3833-3993(+) | CGAAGGAAACACTAGCCGCGACGTTGAAGTAGCCATCAGCGAGGTCAACATCTGTAGCTACGATCCTTGGAACTTGCGCTGTAAGTTCCGAATTTTCTGAATTTCATTTGCAAGTAATCGATTTAGGTTTTTGATTTTAGGGTTTTTTTTTGTTTTGAAC | 1 |
SRR22881465_donor_known::1:4196-4356(+) | TCGATGGAAGATACCCTGACAAAACCAAATCTGATTGGGTTATCCACGAGTTCCACTACGACCTCTTACCAGAACATCAGGTTTTCTTCTATTCATATATATATATATATATATATGTGGATATATATATATGTGGTTTCTGCTGATTCATAGTTAGAAT | 1 |
ERR10903221_donor_known::1:4525-4685(+) | ATGCGGACATTCTATCTGCTTATGCAATAGATCCCACTCCCGCTTTTGTCCCCAATATGACTAGTAGTGCAGGTTCTGTGGTGAGTCTTTCTCCATATACACTTAGCTTTGAGTAGGCAGATCAAAAAAGAGCTTGTGTCTACTGATTTGATGTTTTCCT | 1 |
ERR10903220_donor_known::1:5015-5175(+) | ATTACAGTGATCACCGGCCCAAAAAACCTGTGTCTGGGGTTTTGCCTGATGATAGCAGTGATACTGAAACTGGATCAATGGTAAGCTTTTTTTACTCATATATAATCACAACCTATATCGCTTCTATATCTCACACGCTGAATTTTGGCTTTTAACAGAT | 1 |
ERR10903220_donor_known::1:5246-5406(+) | ATATTCCATCATTGAACATTATTGAGCCTTTGCACAATTATAAGGCACAAGAGCAACCAAAGCAGCAGAGCAAAGAAAAGGTTTAACACTCTCACTGAGAAACATGACTTTGATACGAAATCTGAATCAACATTTCATCAAAAAGATTTAGTCAAATGAC | 1 |
ERR10903220_donor_known::1:7075-7235(-) | CAGGTATGGGAATTCCCAATGTCAGTGATTTTTTTTGTCGATATACTTCTCTTAACATCAAACTCCATGGCTCTTAAAGGTCAGACCTTCAAAATGTTCTCAATGCAAATTGTTTTTTGTTGTTGTTATTTTGGAATCTCACAATGCAAGTTTGTCTTTA | 1 |
ERR10903220_donor_known::1:7302-7462(-) | AAAACTTTGCAGAAGAAGAGAGATTATGTTGGGGATATTCATCTCTAGTTACTTCAAGATATTTCTGCTTGCGATGTTGGTATGTTGTAGCTTTACCTCTCACTTAATTCCTAATATTGAAGTTCCAAACTTCTTAAGCATTCCATAAATCATGCACTAA | 1 |
ERR10903220_donor_known::1:7482-7642(-) | TTGGTGTCTTATCTGCAAACGCTGCATTTATCATCTCTTTTGCCATTGCGACTAAGGGTTTGCTAAATGAAGTTTCCAGGTGATTACTGATTCTTCTTCTTCTTAGTTCTTATTATGAGTTTTTCATCAAAGATCTCAGACTTCTGTCACCTGAAGATTG | 1 |
ERR10903220_donor_known::1:7680-7840(-) | CATAGATAGAAGCTTGCTACTGAGAAAAAGTGATGAAGAATCGAGCTTTTCTGATAGCCCTGTTCTTCTATCTATAAAGGTTAGATCGTTTCTTTTTAATGGACTTAATTAGATTTTTTTTCCTTTAAGGTTTAAATGATTTAAGTCATTGAGATTGTTT | 1 |
ERR10903220_donor_known::1:7860-8020(-) | GTTCTTTTTTTTTTTTTGTGTGTGTGTGTGCAGCATCTGTTGTGGAAGTTGGTCTTCGCCTATCTTCTTCTAGACTGTTGTATCCTTTTGTTTTATAATCTTTTACTATCAAAGTGTAGCTAGCAGATGTGTAGTTGGTGAGATTCATCGGCAAACTTAT | 1 |
ERR10903220_donor_known::1:8154-8314(-) | CGATTTAATCCTTCACAGACCAAAGGTATATAGACACGTCCTCTACAATGCAATTAATCCAGCAACTGTCAATATTCAGGTAAAAAACTATTTCAATTCAAGTTCTTGATTTCAAGCATTGCTAGTTCCTGTCTGATTCTAGCTCTCTTATCTTGAATTG | 1 |
ERR10903220_donor_known::1:8335-8672(-) | AGAGCAATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTAAAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGTAAGATTTTTGTATTAATGGATCTTCTTTGACCCAATTAGGGTTTATAAGATTCTCTATTAAATTTCTTCAAAGTTTCCATCTTTGATCATATTGTTATATTTAGGGAAATTGCAAGGAAGTAGCAGATGAGTACATCGAGTGTGAACGCATGGTCTGTTTTAATCACTTTCTTTCCCTTTTTGGGTGTTTCCCTATTTCTTTCCAATTTTGGTTTTTGGTTCTTTAATTGTTT | 1 |
ERR10903221_donor_known::1:13253-13413(-) | AGAAACAATCGAACCAGCAAGAGAAAGAAGACTTCAATATCAACATCTCTCTCTCCCTCTCTCTCTCTTATATTATAAGGTGAGACCACAAGAACTTTTGATTTTCTTTTTCCTTCTTCCCTTCTTTTAATATATTCTTTGAATTTTTTTTCACTAATTC | 1 |
SRR29195772_donor_known::1:24371-24531(+) | GTGTTCATAAGGATCTGATGAGCCAGAACAGAAAAATGCTCTCGGTGTTCTTGGTTCCCAAAGTGCCTTTGGTTTATCAGGTACCGCCTAATAAGAAACATGTTTGTATTCTTTTTTAAAAAATTGGTTACCTATTGGTTTTGGTTGGTTGATTTATCTT | 1 |
ERR10903222_donor_known::1:24575-24735(+) | AAGTTGGACATTATTGTGGTGAGATGGGACAGGACTTTTGGGATTCTCGAAGGTGGCAACGAGAGTTTGAGTCTAAGCAGGTTGCTTTTTGATGCTTCTTTTTCATACCAGCTTTGATCTTTTATATGAATCAGTTCTTGAAGTTAACGAGTTTTTTTCT | 1 |
ERR10903221_donor_known::1:24882-25042(+) | GTCAGAGTTTTACCATACAACTCCTAAAGATAAAAGACCTGCCATCTTTGGAATGACTGCTTCGCCTGTTAATTTAAAGGGTACTGATTGTTTCTTGTATACAGTTCTCTAAGCTTGCCAATGTTCTTGAAAGTGACACTTTTTGTTTGTAAACGTAGGT | 1 |
ERR10903221_donor_known::1:25355-25515(+) | ATGGTGCTGCCAATTTGATTCATAAACTTAGAGCTATCAATTATACTCTTGCTGAATTGGGTCAATGGTGTGCTTACAAGGTAAAAAAACAACTTAGTAAATAGTTTTCGATAATTTGAAATGGATATGTTATTTTCATATGATATAATTTTTGTGTCTT | 1 |
ERR10903220_donor_known::1:25663-25823(+) | AGTCGCGGCGGAAGTTGGCAAACCAGAAAATGGTAATGCACATGACGAGATGGAGGAGGGAGAGCTCCCTGATGATCCTGGTAAGTATTAATCACATTCTTTGTCTAATCGCTTTTTACCGGTTTTAGAAATCCAATATTAACAGAGCTCTATGGTTTTA | 1 |
ERR10903220_donor_known::1:25917-26077(+) | TCCTCAAATATCAGCACACAGCTGATTTTCGAGCTATTGTTTTCGTTGAGAGGGTGGTTGCTGCTTTGGTTCTTCCTAAGGTTAGGATTAAAGTGAAAAAAACAATTTATTTTCTTGTGTATAATTTTTCTGCCTATGTCTCTCTGAGCCTGGAAATTTT | 1 |
ERR10903221_donor_known::1:26123-26283(+) | GCATGATTGGACACAATAACAGCCAGGAGATGAAATCATCTCAAATGCAGGATACAATTTCCAAATTCCGAGATGGGCATGTATGATTTTTTTTGTCTTTCATTAAGACATATTTTTTTTTTATCTTATACTGAAATGTCTTACTATTTCCTCTTTCTAC | 1 |
ERR10903220_donor_known::1:26372-26532(+) | GCAAAGACGGTGCTGGCATACATTCAGTCTCGTGGCCGGGCAAGAAAGCCTGGATCAGACTACATACTCATGGTTGAGAGGTACATAAAAAGCTTTAAGAACTACATTTTGATTTTTGTAACTACTGGTCACCAAATCAGTACTGATATGTCAACTTGTG | 1 |
ERR10903220_donor_known::1:26696-26856(+) | GAGGCAACTGGTGCCATGGTTAGCTTGAATTCCGCGGTTGGTCTTGTACATTTCTACTGCTCTCAGCTTCCTGGTGACAGGTAAGTTTGCCGATAATTTTTATTGTCCTAATGACCTCTCCTTTTCCTGTATGAGATGATGGATTGCTTCTCTCTCGTGT | 1 |
ERR10903220_donor_known::1:26932-27092(+) | GTAGGCTTCAGCTTCCTTGCAATGCACCGTTTGAAATACTTGAGGGTCCTGTTTGCAGTTCAATGCGTCTTGCACAACAGGTGGACATAATAGTTTGTTTGTTTATCTTACTTGTTATTTTCTTTCAGTGTTCCATGTCTTGAAGTATTGCGTGTTTGAT | 1 |
ERR10903220_donor_known::1:27201-27361(+) | AAGATGATGAAGGTGAGCCTGTTCCTGGAACTGCTAGACATAGAGAGTTCTATCCTGAAGGTGTGGCGGATGTACTTAAGGTAATATTAGCACTAACCTATGAAATTTTTGCTAAATGTGCTTTTAGAGGAATGTGGTTTTCAATATTTGACTGTTTATA | 1 |
ERR10903220_donor_known::1:27453-27613(+) | ATTTTGGCTCTTCAAAAGATCCATTCCTAAGCGAAGTTTCAGAGTTCGCGATTCTTTTTGGCAATGAGCTGGATGCAGAGGTTGTTGTTTCTCTCTCCATGGATTTGAGTATTAGAATTTGAAGATGTAACCATGGTTAACTAAGATTTGTTTTACTGTA | 1 |
ERR10903220_donor_known::1:27633-27793(+) | TGGATCTTTATGTTGCTCGGGCCATGATCACTAAAGCATCTCTTGCTTTCAAGGGATCACTTGATATTACAGAAAACCAGGTTAGACTGAACAACAACCTCTATTTTTCCTAACATTTATGTTTGCTTGAGAAACTTTTTATCTTATATTGGTGGCATTT | 1 |
ERR10903220_donor_known::1:28351-28511(+) | GCAGAAACATCTTTCCCTAGGAAAGAGGGATATCTTGGTCCCCTAGAGTACAACACGTACGCTGACTATTACAAGCAAAAGTAAGAAAACATCTTCAAATAATTTTTTGATTTCTTCAATCCTTTTTCTAAGTTTCATTAGATACTAATACTTTTCTAAT | 1 |
ERR10903220_donor_known::1:28725-28885(+) | CTGTAAGCAACAACCTTTGATTAAAGGACGTGGTGTTTCGTATTGCAAGAACCTTCTTTCTCCTCGGTTTGAACAGTCAGGTTATAAGAAATTCTTTTCACTTTAACAATTTAATGATATAACCGATAAATTAACGCTTCTTTGTTTTTTCTTGCAATTC | 1 |
ERR10903220_donor_known::1:29000-29160(+) | CTATAATGAGAAGAGTTGAGAGCATGTTACTCGCTGTTCAACTCAAAAATTTGATTAGTTATCCTATTCCCACATCAAAGGTATATATATATATATTATGCTTAGTGTCTTTTTTTTTTTTGTTGAAACTATCTAATCATATTTGGTATATATATGTAGA | 1 |
ERR10903220_donor_known::1:29985-30145(+) | ACGAGAATTTTGCTCGCGTTGCGGTTAAACATAAACTCCACTTGTACCTTCGTCACGGTTCAAGCGCCCTCGAAAAACAGGTAAACAAGATTAAGAAACAAAGTATATTGTTCTCAAAGAGTTTCAAATGTTTGACTGTTTGGTTACTTTTTGTTTTTCA | 1 |
ERR10903220_donor_known::1:30231-30391(+) | AAGTTCTTGGAGACATTGTTGAATCTATTGCAGGTGCTATTTTTCTTGATAGTGGAAAAGATACAACTGCTGCTTGGAAGGTTAGTTAGTTAGTTATTTCGGTTGAAAATCTCTAACTAACTCGTTTTTTTTTGGAATTGTAATTCTTAGCTTACTAAAT | 1 |
ERR10903220_donor_known::1:30736-30896(+) | AAGAATGGGCATCAGCCGTTTACGAGACAAACGTTGAATGATATTTGTTTGAGGAAGAATTGGCCAATGCCTTCTTACAGGTAACAACAATTTAATAGAAAGTGGGTAAACAAATCAATTTTGGGCTTTATTGAGCTTATTTCGGGTTTGTGGTGAATTT | 1 |
ERR10903220_donor_known::1:31439-31599(-) | AGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATGTAAGCCTCTGTTTCTTTATCAAGAACCAAACTCTCTTACATCTTTTTTAGTTTGTAACATTAAAGCAACTCTGGATTCTG | 1 |
ERR10903220_donor_known::1:31611-31771(-) | CCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTGTATCCTTTTTCTTCAGTGTTCCTCCTTATTCATCTCTATTGATCTCTCAACAAGTATTAGTTTTTCCCTTTAACTCTAAT | 1 |
ERR10903220_donor_known::1:31851-32166(-) | GTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCATCATGCAGGTATTACTCTTTCTTTCTTTCTCATATTATCCCTATACTATTTGCACCAATTTTTTGTATTTCAAATATATATTATTATCTTTGTGTAGGAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGTAAAACCTAAACTTGATCAATGAAAAGACTCTGTTTTTTTTTTCTCTTACTCTAATCCTTTAGGTCAGTTTAAATGGTCT | 1 |
ERR10903220_donor_known::1:32200-32625(-) | CCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAGATTGGTATATAAATCATTCTAAACATGCTACTTTTTGATTTCATACTTTTGTATTCTGTTACTAAATCATAAGTCTGGATAATCTATCTAGGACCTGGAGCTCCACAGATTTTCAATGTGGTAAGTTTTTTCCTACTCTTTGTTCTAAACAGAGTATGTTGTTATTAGATTCTCTAATCATTTTATCTTTGGATGATTATTAGGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTAGATGAGAACAAAGTTTATTTTTTATATGAATGGTTTTCTTATAGCAAAATCAATCTCAACAAGTTTGAATTCTCTCA | 1 |
ERR10903220_donor_known::1:32947-33107(-) | ACTTGTTTCTCTCCCAAAGTTTCTTCATCATCCTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAGGTACGTTTTTTTTTCTTTTGTCATCGTTCTAAGATCATCAAAGTTTGATGCTTTTCCATGTTTAATCTTCTGGGTATTTTG | 1 |
SRR29195774_donor_known::1:33899-34059(-) | ACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAGCTTCTACATGACAGACTTGGAGGTAAAAAAAAAACATCCACATTTTTATCAATATCTTTAAATCTAGTGTTAGTAGTTTGCTTCTCCAATCTTTATGAAAGAG | 1 |
ERR10903220_donor_known::1:34319-34479(-) | TAACCGTAAGATTAAAATGAGAGACAACAACAGCAACAACAATGCAACTACTGATTCGTGGAAGGAAGTCTCCGAAGAGGTAAAACAAAAACCAATGATTCATGGATATTGCAGAGTTCTTCTGGGAACTAACACTATCAAAATATTTTCAGGGTCGTAT | 1 |
SRR29195772_donor_known::1:35485-35645(-) | AACATCAACTGGAAAAGAAAATCAAGATGAGAATTGCTCGGGTGTTTCTACTGTGAACAAGTATCCCTTACCAACGAAAGTAAGTCTAAGAAAGCTACAAAATTGTAGTCGAAGAATCTGATGAATGCTTTCAAGTGCATGACAAATTATTTGTTCCATT | 1 |
SRR29195772_donor_known::1:35648-35808(-) | TGCAAAACTTGTTTCATCGGCCTCTTCTTCACAGTTGAATCAGGCGTTCTTGGATTTGGAAAAAATGCCGTTCTCTGAGGTTTATTCCTGATCTTTCTCTTCTTCATTTTATCATTTTGGTGGTCTTGTGATAGACTTCTTATGTTTTATTTTCTGGTTA | 1 |
SRR29195772_donor_known::1:36542-36702(-) | TTTCATTTTGTGTGCAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCACAAAAGTTCTTCACAAAGGTAAGTTGATGATCCTTTCAGATCTTTTTAAAACACTTTCGTTATCTTGTGTAAAGGTACCATTTTTTCATATCGATCTAT | 1 |
SRR29195772_donor_known::1:36728-36888(-) | GAGCGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCTTGGCAACGAATTGAAGGTCGAAAGTTTATCTTTTGAATGTTTAGTTTGAACTCTTTGAGATTTTATATTCCTTTGTTTAGGAGTGTCTTTATCTCCT | 1 |
SRR29195772_donor_known::1:36941-37101(-) | GAGAGGATTTGAAGCAGCGAATAGCTGCACCGGTCCTGTTATGGATACTAATACATCTGGAGAAGAATTATTAGCTAAGGTACTACTACTAATGAAATAAGATTGGTGTTTTTTTGTTTGAGAGATTTGGACTGTTGTTGTGTGAAGATTTGATTTTCTT | 1 |
SRR29195772_donor_known::1:37220-37451(-) | AGCATAAATGATACGAATCTGGTGATTGATTACTGATATGAAGATTTGTGAAGGTTTTGGCTGCGGTGGATTCGTTTGGGTGAGGCTTTTGTGAATAATAATAAAGGGAATTCTTTTGAGTTCTGCTGGAGAAGCAGCGACTGTTTCACGGTGGACTTTGAAAAGATTTCTCTTTTGAATTTCGCTCATCACTCTTATCTTAGTGTTTGTGGATAAATATTTCTCATAAAG | 1 |
SRR29195772_donor_known::1:37487-37647(-) | ACGATGACTTCTCCGGGGAGTTCCCGGTGAGATGATAAGTCAGATTGCATACTTGTCTCCTCCATGGCTACTCTCAAGGGTATAACAGTTTACATTATGAGCAGTTTCTAGGATTCCTATAACATACTAAGATCTCTGTTTGGCTGCTGAGAAACTTATA | 1 |
ERR10903220_donor_known::1:39054-39214(-) | CGGCGTTTTTCCCACTTACTCTCATTTCGGCTACTCTATTTGATTTCCTCATTTTACACACTCCTTTATACCTTGGAAGGTATCTTCTTCGATAATCTCTATCAAATTAATTTTGTCTAGGCATAACACTAATTACAACATTAAAACTTTTGGTCTACAG | 1 |
ERR10903220_donor_known::1:39327-39487(-) | CTTGAGCCTTTACAAGAGCAGAGACGTTAATGATTGGATCATAGATGATAGATTCGTTATCACCGTCATCATATACGCTGTAAGTTACAAACATCATATCTTTATAAATTAACTTTTTAAAAATTATAAGATTAGTATGTAAGAACTTAAGATATTAATG | 1 |
ERR10903221_donor_known::1:40131-40291(-) | CGTACACGTCAGCAACTGTTTCGTGTGCTTTGGTAAGCATGTTGCCTGCAATCACCTTCGCTTTGGCCCTTATTTTCAGGTAACGATGGAACCATCTAACCTCTTTATCATCAATTGATAATATATATTAATCTAGATTTTTAAAAAGCACTACTGAAAG | 1 |
ERR10903221_donor_known::1:40391-40551(-) | TATTGTTGTTAAATAGGAAAACAAGACCACAAATAACGTTTAGGCTAATGGTCGATCATTTCGTCAGTGGCCTTCTCGGGTTAGTCCTCTCAAACCTAATTGCATTTTATTATATTATTTTGTCGGCCATTTGCAATTTATTCTTATAGTTTAATAGTTT | 1 |
ERR10903220_donor_known::1:40593-40753(-) | TGAACCATATGGTCATTGGTGCTTATCGAATGGCTATTTCCGCTTTAATTTTGGTTCCCTTTGCCTATGTCTTGGAAAGGTTTGATATGTTGATCGAAATAGGAGATAGTGAAAATTCTGTATTCTAACATGCAAGTAGAAATTTAGAAGCCACGAATGT | 1 |
ERR10903220_donor_known::1:45564-45724(-) | CGGGAGAAACAGAGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAATGGAACAGTTAAGTTCGTTATCCATAAAAAGAATCTTGCTTGAGGAAACTTCTTCTACTGCTCTCTGGCTTTATCACAATCTCTCTTT | 1 |
ERR10903220_donor_known::1:45962-46122(-) | AGAGAGCCGTGGAAGCGGGTACGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATGGAACAGTAAGAGCCCGGGAAACCAAAAAACAAGTCTATCTTTCTTCTGGTTGAGTGTAAAGTTGAGTGCTTTGGTTTTGTTGCTAT | 1 |
ERR10903220_donor_known::1:46294-46454(-) | GTGTAATATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGTAATCTCTGTAGAGGTGGTACTTCTTATCCAGATTTGATTGATCCTACAATGCCTTTATGAAAATTCAAAGTTTTACTCTTTCAACTTAGCTTTG | 1 |
ERR10903220_donor_known::1:47993-48153(-) | GGTCCAACCTTGGTTGAATGTGAGACTTATAGATTCAGAGGACACTCCTTGGCTGATCCCGATGAGCTCCGTGATGCTGGTAAATATCGACTTCCTTCTGCTTCTTGATGCTTGTACTGATTATCTAAGGGTTGAAACAACCTTCTCTTTAATTTGAATT | 1 |
ERR10903220_donor_known::1:48854-49014(-) | CAACGCCACCCGTCGATCTCCCGTCGTCTCTGTCCAGGAAGTTGTCAAGGAGAAGCAATCCACCAATAATACCAGCCTGGTACGCTTCCTCTCCTCGTCTCCTTCTTTTGGAATTTTACAAGTTGTGAGATTTGTTGTATTGATTTAAGTAATTTGAAAT | 1 |
ERR10903220_donor_known::1:50337-50574(-) | CCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATCATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCTGGCGGTGGTGCGGCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAGGTAAATGAAATAGCAACGATAGACGAAATCATTCTTCTAACTAATAAGTGATATAAAATTGATCTCATTTTGGTATTGCAG | 1 |
ERR10903220_donor_known::1:50801-50961(-) | TAAAAAAATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGTATCGCTATCACGGTATCTTTCCTTTGACTCCTGCTTGTCTATTTCTAAATCTTGATTGGTCTCTTTGCTTTAGTCAGTAGGGTTTTGGAACCG | 1 |
ERR10903220_donor_known::1:50982-51204(-) | CTCCCGTCTCCGCATCCAAACCCTAGAAATTTTGTCTCTCTCGCCGCCTTGCGAAAAGCATTTTCGATCTTACTCTTAGGTAGTCTATGATTCTCCATTTGATCCGTTTATACTTGTTATTGGCATTTCATCATCGTCTGGGTTGTTCGACTTACTCTAATTTTGGTTTAAAACGGATTTAAAGTTTGTTTTTTTGTGAATAAGCAATTAATCTATTGTTAC | 1 |
ERR10903221_donor_known::1:52266-52426(+) | GGCTCACCGCTGTAAAGCGAGCTTTCCGATCTCCGACGAAGAAAGATCATAGTAATGACGTCGAAGAAGATGAAGAAAAGGTTTCTTATTCTTAGATCTTATTATTTGCTTACTATATTCAAAGTATGATTATTGGTTTTCATTTTTCTCTGTTTTTTTA | 1 |
ERR10903220_donor_known::1:52650-52810(+) | CACTCGCACCGAGGCGGATTTATTACGCAAGAGAAAATTACGCTGCTGTTGTCATCCAGACTTCTTTCAGAGGATATTTGGTGAGCAATTATTAATGACCTATATTTTTACTTTCATTTTTTTAACCAACTTGACTTCTAGACCACTTTTTAGTGACAAT | 1 |
ERR10903220_donor_known::1:53103-53263(+) | GTCGCAAATCCGCGTTCAGTGACTCTCACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCAGATCGACAATCCATGGTTAGTATAGCCTCCTAGGCCTTGCCTAAACTATAGCATAATCAATTGATATGTTTTTTAGTTATAGACATGTTTTGCTT | 1 |
ERR10903220_donor_known::1:53544-53704(+) | TGAAAGTGATGCTACAACGGAGACGGGACACAGCATTGAGACATGACAAGACTAATTTGTCACAAGCTTTCTCTCAAAAGGTAAAATTAATTAAACCGGCATATAGTCTGTTATATATATTGAGCTTGTTGATAACATCGTTTCGTTTCAATGGAAAGAT | 1 |
SRR29195774_donor_new::1:63283-63443(-) | ACAAGACAACAAGGTTAATCAAAGTCAGAGCTCTGTTGAGATGTTGAAATCAATGGGCTTTAAGTTTCCTTAATTTGTGGTAATCTTTTGGGGCTTTTCTTGGTTTTAGTTTTTTTGTTTTGTTGTTGCAGAAAGTAGTAGACTAGTAGTAGGTATGCTT | 1 |
ERR10903220_donor_known::1:64500-64660(-) | ATAGGTGTTTGAAGTGGCGCCATCATTGCATGTGGTAGAGCTTAGGAAAACCGGTGGTGATACCCTCGAGTTTCACAAGGTATGTGATTCGGTTTGATCTTCATCAAAAACCGGTTCGGTTTTGATCCGGTTAACATCTCTAGTTTAGTGTTTAAATTGG | 1 |
ERR10903220_donor_known::1:64669-64979(-) | ATCTGCGAGTGAAATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGGCTTTAATGTCCGTAAAGACAACTACAAGGTCTGTTCTTCTTCTTCTTCTTCTTCTTGATTTTGTTTGTGTCAACTAATGTCTTTGTAGCTTCGTTAAACATTGTTTAAGTAAACTTCGCAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTACAGAGGTAAGAAAGAAAAAAATACTCCGGTTCAGTTCGGTTTTTGGATTTTGATGAATATCGTTATCTAATTGTTATGGTTTGGTA | 1 |
ERR10903220_donor_known::1:65028-65188(-) | ACCTGTATCCATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGAGAAGCAAGCGGTAAGAACTTTTTTCTACTTACAGTTTGTCTTGATTTTCTAAAATCATGCATAGGTTTTATCTAACTAAATCTGATTTGTT | 1 |
ERR10903220_donor_known::1:65249-65409(-) | GTACAAGCCGCCATCATTTGACCAAGATGACGAGGACATAACCATAGATGATGTTGATGCTGCTTTTAGTAACTCCAAGGTAAACACCGCCATTTCCAAATTCTCCATCTGGTTGTGTATATCATAGTTCGGTTTAAGTAAACCAATGTATTGTTACCAA | 1 |
ERR10903220_donor_known::1:65481-65641(-) | TGAGTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATCAAGCGTATTCTCGAACCCAACCCTATTACCGTAAGTGCCTCTTACATGAAGTAATAGTTGTGAAAATGTGAACATGACATGCTGCCAACCATAGATTGTGCAAGAGCTTAA | 1 |
ERR10903220_donor_known::1:65657-65817(-) | TTGTGGTGTCATTCTCTTTGTGCTTATGGCTGGTTACTTGCCTTTTGATGAGCCGAATCTCATGACATTATACAAACGTGTACGTGTAAATTATCTCTCCCTCTGCTTCTTGATCTTCTGCAGTACTTTTCTAGTCTCATCTTTGGTGTTTAATATATAC | 1 |
ERR10903220_donor_known::1:66025-66340(-) | TGAAAATCTGATCCTTGACGCAAATGGGGTTTTGAAAGTCTCTGATTTTGGGTTAAGCGCCTTCTCACGACAAGTTCGGGTAATGCCATTATATTTTTCACTTGGCAATTAATTTCTGATATATATAACCAAGATATCAATTTGAATGAAGTGTTCTAAGCATTGTTCTTTTGAATGCAGGAAGATGGTTTGCTTCATACAGCTTGTGGAACGCCAAACTACGTTGCCCCTGAGGTATTATGTACTAACTTTCAGCACTTAAAAAGGCAAAGAATATGAAATGTTCTGTAGATCCTCTTTGGAAAATAAGATTTT | 1 |
ERR10903220_donor_known::1:66368-66528(-) | AGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCGAGGTGTCTACCACAGAGATCTCAAGGTCTTTCTTTTGTTTTTGTGCACTCTTCTTGTTTCCTGTGATTACGATATTCATTCTTCTTAGTTCTTATTCAAGTTTCTT | 1 |
ERR10903220_donor_known::1:66596-66913(-) | TTTTGTTGTTGTGCAGCTTAAAAGAGAAATATCTACAATGAAACTGATTAAACATCCAAATGTGGTTGAAATCATTGAGGTACGAAACTAATTAGTTATCATTCCTTAGATATTTTTTAAATTAAGTTTTGAATCTTAGCGTGTAAAACATCTCTCTGTGGTAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCTTGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGTAAGTAACCTAACTTAGAGAATCTTCCTCTCTTTTCTCTTCACAAATATTGACATATGTTCTCTGTCTTTCTCTCTTCTT | 1 |
ERR10903220_donor_known::1:67242-67402(-) | GAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTTCCGTCACAAAATGGTCGAACAGGTTCGTTAATTGTGTTTGGTTTGATCACGTAAAATGATTATGGATTTGTTTGTTTTTAAGTACTATAAAGAACAGTTTAAT | 1 |
ERR10903220_donor_known::1:72589-72749(+) | AGCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCGTCGATTCCCCCTGCTAACAACATCACTACCGAACAGATCCAAAAGGTTCCTTCTTTCTCACCCTATATCTCTCCCTCTCTCTTAATTTGTTCAACACTACTTAGGAGGCTCTTAGAGCTTTTTTG | 1 |
ERR10903220_donor_known::1:73083-73243(+) | CAGTACCTTGATGAGAACAAGAAGCTGATTATGGCCATCATGGAAAACCAGAATCTCGGTAAACTTGCTGAGTGCGCCCAGTAAGTCTCACCTTTTCTATCCATCTTCTTATGTCTCTTAGATAGTAATGGAAGCTTAGAATTACTATTATTAATGGTGA | 1 |
ERR10903220_donor_known::1:73315-73475(+) | TGTATCTTGCTGCAATTGCTGATGCTCAACCCCCACCACCTACGCCAGGACCTTCACCATCTACAGCTGTCGCTGCCCAGGTTGTTTGTGATGATAAAACTCAATTGCGATCTATCACAGAAATTTAATGTTGTTTGGGGGTTTGCTTACTGTTGGGTAT | 1 |
ERR10903220_donor_known::1:73660-73820(+) | GGGGATTAGACCAATGGGTATGACCAACAACGGGATGCAGCATGCGATGCAACAACCAGAAACCGGTCTTGGAGGAAACGGTAACTCTCTTTACATTATTAAGACAATACTCAATCTCATAAATTGTAACTTGTATCCATTACTTCTTTCTTTGCTAACA | 1 |
ERR10903220_donor_known::1:74256-74416(-) | ATAATCGGTGCTCTCATCGGTTCTTTCGGAATCTCATACATCTTCGACAAAGTTATCTCTGATAATAAGATCTTTGGAGGCAAGTTCTGCTCAAGATTTATCTAGTTTTGTGTGTGTTTTCAAGTTAGGGACGATCTTAATGGTTATCTTCTTGTGAAAA | 1 |
ERR10903220_donor_known::1:74579-74739(-) | GGACGACCGTCTTCCACCGTTGAATTCTTCTGGAACTGGAGTCCACTGTTTAAGCTTCACTGTCTCTGAATCGGCAAAGGTAAACGTATCAATTATTCTACAAACCCTTTTATTTTTCTTTTGAATTACCGTCTTCATTGGTTATATGATAACTTGATAA | 1 |
ERR10903222_donor_new::1:78009-78169(+) | AAACAACAAAATTGAATTCGTTGTTTGGGGGGATAACGATGATCAGAAAGCTAAAAGGGAAGGCTCTCTGATTTCAAAAGGTATCTTTCTTTCTTTATTTGTTTCAGTTGTAAATTACTTCCAAAAGATTCCGAATCTAGTTTCTCTCTTCCTTATGTAG | 1 |
SRR22881465_donor_known::1:83802-83962(-) | GGGTAACTTTCTTGACATGTTACTTTCTCTTCAAGGTTCAGAAAAATTATCAGAATCCGACATGGTTGCTGTTCTTTGGGTAAGTTTTGTCTTTTAATCACTATTCAATCCGTATATCATGAATATCAACATTAGTCAACTAGATAACATCTAAGAAGAA | 1 |
SRR29195772_donor_known::1:87798-87958(-) | TCGAGTTTCAGACACGGACCATCACTCTTCGGGGCAAACTCGTCAAAGCTCAGATCTGGGACACCGCCGGTCAAGAGAGGTTATATCATCTATATCCAAAAACACATTGATAATTCTTTATATATTTTATTAAGCTCTCACTTTTGGATTCAAATCATTT | 1 |
ERR10903220_donor_known::1:89001-89161(+) | ATCTGTTGCGATACGAGGGAGGTGGCAATTCGAGATTCTTCTGTTCCACATGTCCATACGTCGCCTACATCCAAAGACAGGTTCTTTTTTCAATTATATACCTTTTGAAAGTTTGTGAGCAAACCGTTAAAATTCTCTCCTCTGTTCCTGAGTGCTTTGG | 1 |
ERR10903220_donor_known::1:89183-89343(+) | GAAGAAGCAACTTCTGGTTAAGAAATCTATAGAAGCTGTTGTGACTAAAGATGATATACCCACAGCTGCTGAAACTGAAGGTATTTTCAGTCTCTTGTCTTCTCTTCTTCTAATTTTAGGACTGTGATGAGTTGGTTCAGAGTTGATCTCACTTGGGGAA | 1 |
ERR10903222_donor_known::1:89499-89659(+) | AAGTGCGAGTTCACTTGGCGTGAGGAATGAACTGACTGATGATCATCTTCTCCGTCTCTTTGCCTCTGCCAATTTTGAAAGTTTCTACTTTTGCAACCTTCTTAGAGTTTGTTTTACCATTGCAAATTTAGCAGATCCTTTATGTACTCTGCTTCTTTCT | 1 |
ERR10903221_donor_known::1:91553-91713(+) | GTTTTAATCTTTGAGGTGAAGCAAATTGATCTGGTTTAAGATTCAGTATTGAGACGACGACGTATTTATTAATTGCATTGGTATTTGACTTTGATCTGAACAAAACTTACTTCTTCTTCTCCCTCTTCCTCTGTTCACCTAACCTTTAGGCTCCAGATTT | 1 |
ERR10903220_donor_known::1:91990-92150(+) | GGTCTGGTGCTGCTACTCTCAACGCCATTTATGCTCTCGCTCGTCATTATGAGAAATTGGGTTTTGATCTTGGTCCCGAGGTAAACATTGTGTTGACAGGTTAGACTATTCATAATTTGACCTCACTGTATCTCTTGCTTGAGTTGATATCTGAATCATT | 1 |
ERR10903220_donor_known::1:92421-92581(+) | CCCTGATGGTCCTGTTCCTCTCCTTTTTGATCATATTCTTGCTATCGCTTCATGTGCAAGACAAGCTTTCCAAGACCAAGGTGATATCCTTTTTTTAGCTATGTAAAACATACAACGGATGCTGATTTTTGAATTTTATTTGTGAAGGTGGATTATTTAT | 1 |
ERR10903220_donor_known::1:92853-93013(+) | GCAGAGCATGGTCGGACCTGGTCGCTCTTGGATGCTCGTGCCAACCCATGATCTTAGAGCTTATAGGTAGTAAGAAAGAGGTAAGTTTCTCATATTATGCAGCTTATTCCTAAAGAATGATATTGTACTTCTTCAACAGACTTTGACCTCTTATACATGT | 1 |
ERR10903220_donor_known::1:93091-93251(+) | TGATTGGCTGCGAACCAGACCTTTGGGTGAACTTCTTGTTAACAGTCTGGGGAGGCAAAAGATGTACAGCTACTGCACCTGTATGTTTGTACTGATTTCAAGACTAGCTAAACTTAAAAAAAAAGAAATCGAGATTGCTATGCTTACTTTTCTAATCTCT | 1 |
ERR10903220_donor_known::1:94201-94361(+) | AAAAGCTATAGAGTTGGAGCATAAAGTATGGGGAGCAGTTGCAGAAGAAACTGCTTCAGCTGTGAGATATGGTTTTAGAGGTAAAAATCTAGCCACCACCGTTTGGTATAACACCTTTCATAAACCTGGATTTAACTCTTTTATTTGTTCTTCAGAACAT | 1 |
ERR10903220_donor_known::1:94995-95155(+) | TTCAAGTTGTTCCTTTACTCGCCTCGCCACAGCTAATTTCAGAGTTGGAGCAACGCCTCCTTGTTGTTTTCACGGGTCAAGTAAGTAGCAACCACTGAGAGGAAGAAAAGATTTTTTGTTAGCTACAGAGTCTCATTCATTTTATGCCTTTTTTATATAA | 1 |
ERR10903220_donor_known::1:96077-96237(+) | GAACAAGATTGAGAGAGAAGAGCTAAAGCCAGGAGATCACATCTATACTTACAGAGCAATCTTCGCTTATTCTCACCACGGTAACTTTAGATTCATTCTTCCCAAGTTTGCTCCTTTCTTTCTCGTTCATTCAATCATAACATCAAAAAGTGAAATTATC | 1 |
ERR10903220_donor_known::1:97725-97885(+) | TCGGTTGGCTCGTTGTTCTCTCTGTCTCTGGTTGTTCCCCTGGAATGGCTTGGACTGTTGTTAATCTCGCTCACTTCGTTGTAAGTCTTCGATTGTGTTTATGCTTTAGAGATGATTTTTTCACTTAGGGTTGTGACTTTAAATTAGATGATGGATTGAT | 1 |
ERR10903220_donor_known::1:98525-98685(+) | TTAACTTGGTGGGAACAAATGGACAATGGTCAACAGCTTACCCGCAACCGCAAATTTCTTACCCTAGTTCCTGTTGTTCTGTAAGTCCCAGCACCTTGTTCCTCAAAATCTCACCACTCTTGTCTATTTCCAATCTATATTTTCTTAGCAAATTATTTTC | 1 |
SRR22881465_donor_known::1:99951-100111(+) | AAAGCCAAAAGCTTCGGTCGCGCAAGATCGCTTCATTTGTTTCTAGAGTGATTCATGGATTCTTTAAACTACTAATAATGGTATCTTTAGTTGTTACTTCGTTTTCTGATCTATTTTACAAATCTTACTCTTTTGCTCTGTTTTCGTGGTTTTGTTTAGA | 1 |
SRR29195772_donor_known::1:100140-100300(+) | ATCAGACTGTTTTCTCATGGATCAGTGATGATTTTTGTTTCCTGGGTCAACTTCTGATTTTGGAATTTCTGAAAATTTTGGTAAATTTACTCGATCCCATTGCGAAATCTTACGCATGATCTTTGTAGTTTGCTCTGCTCAAGACTTTCTTTTTTTTTGG | 1 |
SRR29195772_donor_known::1:109250-109410(+) | TTTTTGGGTCGGATTCTCAAAAATCTGATTTTGAGGAGAAAATCTCGGTGGAAGAGACTTGATTCAAATCTTCTTTACTGGTAAAAATATATTCTTCTCAATTCCTCATTTTCTGTTGGTGGAGTTTGATTTTTGTCATTTAATTGTTGTTAAAGAAAAT | 1 |
ERR10903220_donor_known::1:114353-114513(+) | CTCCGATCAAAAGGGCTTTCAGCAGTAGAATTGACGATGAATTCGATCCCCAAATCATGAATATAAATGAGCTGAATCAGGTTTTTCTCACTCTCTGTCTGTTGTTTTGGTTTTTTCTTTTTCTCGTCATGTTGTTTTGGTTTTGTGTAGCTCTTAGTAG | 1 |
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Arabidopsis thaliana RNA-seq Splicing Dataset
Dataset Description
This dataset contains splice junction information from Arabidopsis thaliana RNA-seq data across multiple tissues (shoot, root, leaf, flower).
Data Processing
- RNA-seq data mapped to the reference genome using STAR
- Splice junctions filtered based on supporting read counts
- Junctions with ±2bp shifts merged using bedtools
- Data split by chromosomes: chr 1-3 for training, chr 4 for validation, and chr 5 for testing
Files
train.csv: Training data from chromosomes 1-3validation.csv: Validation data from chromosome 4test.csv: Test data from chromosome 5
Usage
from datasets import load_dataset
dataset = load_dataset("suzuki-2001/athaliana_rnaseq_splicing")
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Size of downloaded dataset files:
104 MB
Size of the auto-converted Parquet files:
48.9 MB
Number of rows:
529,548