Datasets:

songlab
/

TraitGym

Dataset card Data Studio Files Files and versions Community

Subset (4)

complex_traits · 11.4k rows

Split (1)

test · 11.4k rows

chrom stringclasses 22 values	pos int64 99.5k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	trait stringclasses 259 values	label bool 2 classes	maf float64 0 0.5	ld_score float64 1.53 628	consequence stringclasses 16 values	tss_dist int64 0 1.58M	match_group stringlengths 5 37
1	51,850,952	G	A	0		false	0.007681	45.066	dELS	27,087	dELS_20
1	52,633,219	C	T	0		false	0.10708	112.54	5_prime_UTR_variant	50	5_prime_UTR_variant_0
1	52,726,497	G	T	0		false	0.013497	161.42	5_prime_UTR_variant	29	5_prime_UTR_variant_4
1	52,726,498	G	A	0		false	0.013497	161.42	5_prime_UTR_variant	30	5_prime_UTR_variant_4
1	52,927,340	C	T	0		false	0.008895	158.75	5_prime_UTR_variant	21	5_prime_UTR_variant_4
1	53,902,580	A	C	0		false	0.38739	88.883	dELS	8,368	dELS_10
1	54,127,292	C	T	0.000668		false	0.38371	94.85	intergenic_variant	22,996	intergenic_variant_0
1	54,264,321	C	A	0		false	0.009798	6.8826	intron_variant	12,460	intron_variant_7
1	54,288,588	G	T	0		false	0.3344	20.748	dELS_flank	36,727	dELS_flank_5
1	54,585,990	G	A	0		false	0.022904	47.745	dELS	37,534	dELS_23
1	54,623,643	A	C	0		false	0.31213	87.077	PLS	86	PLS_1
1	54,623,644	T	C	0		false	0.31205	87.046	PLS	87	PLS_1
1	54,623,788	G	C	0		false	0.31504	87.822	PLS	231	PLS_1
1	54,764,790	C	G	0		false	0.44733	75.581	PLS	266	PLS_4
1	54,970,388	A	G	0.000795		false	0.36452	82.093	dELS_flank	10,239	dELS_flank_8
1	54,970,432	T	C	0.000795		false	0.36461	82.097	dELS_flank	10,195	dELS_flank_8
1	54,976,684	A	G	0		false	0.42242	66.558	intron_variant	3,943	intron_variant_1
1	55,052,420	G	A	0.006669		false	0.042196	47.255	dELS_flank	12,124	dELS_flank_11
1	55,053,079	C	T	1	ApoB	true	0.37639	39.42	dELS_flank	12,783	dELS_flank_3
1	55,053,501	G	A	1	ApoB	true	0.38525	89.354	dELS	13,205	dELS_10
1	55,232,461	C	T	0.999994	ApoB,LDLC	true	0.00145	6.8618	intron_variant	17,096	intron_variant_2
1	56,399,434	G	T	0		false	0.16999	38.254	dELS	180,128	dELS_29
1	56,399,530	A	G	0		false	0.2121	38.526	dELS	180,032	dELS_29
1	56,403,696	T	C	0		false	0.27643	42.447	dELS	175,866	dELS_27
1	56,464,782	G	A	0		false	0.00152	6.1438	intron_variant	114,780	intron_variant_13
1	56,513,759	T	C	0		false	0.045529	23.605	non_coding_transcript_exon_variant	65,803	non_coding_transcript_exon_variant_3
1	56,650,428	G	A	0		false	0.019161	83.922	dELS_flank	5,113	dELS_flank_1
1	56,659,241	T	C	0		false	0.35792	156.39	intron_variant	13,926	intron_variant_12
1	56,659,305	G	A	0		false	0.35867	156.69	intron_variant	13,990	intron_variant_12
1	56,664,031	A	G	0		false	0.35837	156.61	intron_variant	18,716	intron_variant_12
1	56,824,073	A	T	0		false	0.21964	20.86	non_coding_transcript_exon_variant	4,668	non_coding_transcript_exon_variant_4
1	56,836,012	C	A	0		false	0.21754	22.02	dELS	16,607	dELS_6
1	57,253,258	C	T	0		false	0.02052	51.418	dELS	37,806	dELS_23
1	58,150,560	A	G	0		false	0.34987	120.9	non_coding_transcript_exon_variant	388,257	non_coding_transcript_exon_variant_7
1	58,756,148	G	C	0		false	0.004933	24.548	dELS_flank	27,898	dELS_flank_6
1	58,930,375	G	T	0		false	0.051912	14.718	dELS	146,327	dELS_28
1	59,114,813	A	G	0		false	0.26772	43.052	dELS_flank	181,824	dELS_flank_12
1	59,116,943	C	A	0		false	0.18215	35.892	dELS	179,694	dELS_29
1	59,128,853	G	A	0		false	0.26633	42.988	dELS	167,784	dELS_27
1	59,137,400	C	T	0		false	0.29258	36.408	dELS	159,237	dELS_27
1	59,181,947	T	G	0		false	0.001727	6.1245	intron_variant	114,690	intron_variant_13
1	59,644,837	C	T	0		false	0.013905	13.275	intron_variant	90,918	intron_variant_3
1	61,891,259	G	A	0		false	0.001726	6.7124	intron_variant	17,195	intron_variant_2
1	62,213,459	A	G	0		false	0.092684	70.171	dELS	18,609	dELS_14
1	62,252,087	G	A	0		false	0.1334	64.211	intron_variant	11,336	intron_variant_0
1	62,284,200	T	C	0		false	0.35324	167.55	intron_variant	11,408	intron_variant_12
1	62,296,516	G	A	0		false	0.38361	142.45	pELS	22,784	pELS_6
1	63,207,669	T	C	0		false	0.002825	6.6255	intron_variant	114,897	intron_variant_13
1	63,261,871	T	C	0.999823	Height	true	0.04905	26.762	non_coding_transcript_exon_variant	60,695	non_coding_transcript_exon_variant_3
1	64,112,531	G	T	0		false	0.13458	45.345	pELS	91,091	pELS_3
1	64,186,722	T	C	0		false	0.37062	104.66	pELS	16,900	pELS_6
1	64,364,060	C	G	0		false	0.01498	18.866	dELS_flank	106,068	dELS_flank_4
1	64,550,998	G	A	0		false	0.28388	42.145	dELS_flank	45,096	dELS_flank_0
1	64,838,205	T	C	0.979785	Eosino	true	0.015263	12.981	intron_variant	93,109	intron_variant_3
1	64,848,529	C	A	0.996294	Eosino	true	0.013542	19.246	dELS_flank	103,433	dELS_flank_4
1	64,963,574	G	A	0.001212		false	0.13094	130.32	dELS	2,709	dELS_11
1	64,969,742	C	G	0.003047		false	0.1289	128.55	dELS	2,805	dELS_11
1	65,298,786	T	C	0		false	0.41399	107.11	non_coding_transcript_exon_variant	10,756	non_coding_transcript_exon_variant_2
1	65,516,705	G	A	0.998833	Age_at_Menarche	true	0.024817	31.246	intron_variant	8,983	intron_variant_4
1	65,548,380	G	A	0		false	0.001273	6.7406	intron_variant	17,165	intron_variant_2
1	65,604,098	A	G	0.999536	CRP	true	0.14951	142.19	intron_variant	38,551	intron_variant_5
1	66,272,166	A	G	0.002946		false	0.38809	85.128	dELS	14,518	dELS_10
1	66,302,446	A	G	0		false	0.009697	42.259	dELS	28,281	dELS_20
1	66,455,959	G	C	0.000372		false	0.002094	5.572	DNase-H3K4me3	77,307	DNase-H3K4me3_0
1	67,622,756	A	G	0.984686	CRP	true	0.2729	56.7	intergenic_variant	62,444	intergenic_variant_2
1	67,686,705	T	C	0.001238		false	0.28829	140.21	pELS	1,299	pELS_0
1	67,686,755	C	T	0.001209		false	0.28849	140.26	pELS	1,349	pELS_0
1	67,938,372	A	G	0.000627		false	0.013261	20.15	dELS_flank	104,904	dELS_flank_4
1	68,117,603	C	A	0		false	0.0414	31.518	non_coding_transcript_exon_variant	65,885	non_coding_transcript_exon_variant_3
1	68,199,340	T	C	1	eBMD	true	0.34494	23.909	dELS_flank	32,346	dELS_flank_5
1	68,465,683	A	G	0.002212		false	0.14938	131.38	dELS_flank	15,728	dELS_flank_7
1	68,883,105	T	A	0		false	0.32192	70.435	non_coding_transcript_exon_variant	385,883	non_coding_transcript_exon_variant_7
1	69,538,926	A	T	0		false	0.001741	17.125	intergenic_variant	28,995	intergenic_variant_4
1	69,568,369	C	T	0		false	0.12241	113.66	5_prime_UTR_variant	28	5_prime_UTR_variant_0
1	70,430,950	G	A	0		false	0.05715	48.225	non_coding_transcript_exon_variant	19,566	non_coding_transcript_exon_variant_1
1	71,027,314	C	T	0		false	0.069419	134.97	intron_variant	20,318	intron_variant_11
1	71,030,670	A	G	0		false	0.069397	135.11	intron_variant	16,962	intron_variant_11
1	71,487,440	G	A	0		false	0.24168	178.89	non_coding_transcript_exon_variant	406,150	non_coding_transcript_exon_variant_7
1	72,119,826	T	C	0		false	0.01456	81.211	dELS	18,895	dELS_13
1	72,276,704	C	T	0		false	0.20078	286.82	dELS_flank	5,834	dELS_flank_2
1	72,285,869	A	G	0		false	0.19266	292.31	dELS_flank	3,329	dELS_flank_2
1	72,286,390	G	A	0		false	0.19249	292.32	dELS_flank	3,850	dELS_flank_2
1	72,287,256	C	T	0		false	0.19266	292.39	dELS_flank	4,716	dELS_flank_2
1	73,980,659	G	A	0		false	0.034621	88.683	dELS	94,130	dELS_22
1	75,764,472	T	A	0		false	0.013375	77.915	dELS	21,758	dELS_13
1	75,893,875	C	T	0		false	0.011251	27.351	intron_variant	38,528	intron_variant_9
1	76,406,217	T	C	0		false	0.016082	11.933	intron_variant	92,416	intron_variant_3
1	77,148,444	T	C	0		false	0.003847	9.5553	DNase-H3K4me3	70,984	DNase-H3K4me3_0
1	77,184,209	G	A	0		false	0.15012	138.9	intron_variant	35,219	intron_variant_5
1	77,263,984	C	T	0		false	0.33515	131.15	intergenic_variant	18,034	intergenic_variant_1
1	77,268,877	A	G	0		false	0.33526	131.54	intergenic_variant	13,141	intergenic_variant_1
1	77,273,153	A	T	0		false	0.33571	131.8	intergenic_variant	8,865	intergenic_variant_1
1	77,273,163	T	A	0		false	0.33571	131.8	intergenic_variant	8,855	intergenic_variant_1
1	77,282,053	G	T	0		false	0.11767	129.56	5_prime_UTR_variant	33	5_prime_UTR_variant_0
1	77,438,940	T	A	0		false	0.12673	79.258	pELS	93,166	pELS_3
1	77,701,824	C	T	0		false	0.047445	69.336	intron_variant	18,404	intron_variant_8
1	77,984,833	C	A	0.999774	ALP,BW,Height	true	0.12432	131.78	dELS	4,648	dELS_11
1	78,004,822	C	T	0		false	0.01789	29.951	PLS	116	PLS_0
1	78,064,000	C	G	0		false	0.048964	67.858	intron_variant	18,033	intron_variant_8
1	78,321,211	T	C	0		false	0.001295	6.8014	intron_variant	17,326	intron_variant_2

Subsets and Splits

No saved queries yet

Save your SQL queries to embed, download, and access them later. Queries will appear here once saved.