Replication Data for:  Input Mycobacterium tuberculosis data for Resistance Deep Learning Model
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'Mycobacterium tuberculosis genetic mutation data obtained via whole genome sequencing using Illumina. Illumina raw reads were processed with Stampy and Platypus based pipeline for variant calling. Mutations found are listed, assuming >40% purity and meeting Platypus Pass criteria. Mutations not found not listed. All isolates met quality criteria to confirm coverage of regions of interest. Also included is a separate file with the same ids linking the genotypic data above with in vitro culture based drug susceptibility testing for 10 drugs. Further description of the data and methods is available here: https://doi.org/10.1101/275628 (2019' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["Antibiotic resistance","Clinical isolates","In-vitro susceptibility testing","Mycobacterium tuberculosis","Nucleotide Sequence"]} <|eot_id|>
 Here is the Description of a dataset. Description:'Mycobacterium tuberculosis genetic mutation data obtained via whole genome sequencing using Illumina. Illumina raw reads were processed with Stampy and Platypus based pipeline for variant calling. Mutations found are listed, assuming >40% purity and meeting Platypus Pass criteria. Mutations not found not listed. All isolates met quality criteria to confirm coverage of regions of interest. Also included is a separate file with the same ids linking the genotypic data above with in vitro culture based drug susceptibility testing for 10 drugs. Further description of the data and methods is available here: https://doi.org/10.1101/275628 (2019' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
Mycobacterium tuberculosis genetic mutation data obtained via whole genome sequencing using Illumina. Illumina raw reads were processed with Stampy and Platypus based pipeline for variant calling. Mutations found are listed, assuming >40% purity and meeting Platypus Pass criteria. Mutations not found not listed. All isolates met quality criteria to confirm coverage of regions of interest. Also included is a separate file with the same ids linking the genotypic data above with in vitro culture based drug susceptibility testing for 10 drugs. Further description of the data and methods is available here: https://doi.org/10.1101/275628 (2019
Antibiotic resistance; Clinical isolates; In-vitro susceptibility testing; Mycobacterium tuberculosis; Nucleotide Sequence