Replication Data for 'Deciphering the unique SNPs among leading Indian Tomato Cultivars using Double Digestion Restriction Associated DNA sequencing'
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'Worldwide grown and consumed tomato (Solanum lycopersicum) crop is used as a model crop for new cultivar and fruit development. Genetic and genomic research of Indian tomato cultivars will provide an insight to develop new breeding strategies and crop improvement. The present study aimed to identify the high quality common and unique SNPs and INDELs, present in 9 different Indian tomato cultivars using double digest restriction site-associated DNA sequencing (ddRAD-seq). A total of 36.8 million raw reads was generated for selected 9 samples and an average of 94% high-quality reads of each were uniquely aligned to the reference tomato genome (SLv3.0). Out of 6,957 SNPs and 188 INDELs, a total of 1,165 SNPs and 68 INDELs were found in genic regions. The genetic relationship among these cultivars suggested 4 well-differentiated groups of c' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["ddRAD-seq","INDELs","SNPs","Tomato"]} <|eot_id|>
 Here is the Description of a dataset. Description:'Worldwide grown and consumed tomato (Solanum lycopersicum) crop is used as a model crop for new cultivar and fruit development. Genetic and genomic research of Indian tomato cultivars will provide an insight to develop new breeding strategies and crop improvement. The present study aimed to identify the high quality common and unique SNPs and INDELs, present in 9 different Indian tomato cultivars using double digest restriction site-associated DNA sequencing (ddRAD-seq). A total of 36.8 million raw reads was generated for selected 9 samples and an average of 94% high-quality reads of each were uniquely aligned to the reference tomato genome (SLv3.0). Out of 6,957 SNPs and 188 INDELs, a total of 1,165 SNPs and 68 INDELs were found in genic regions. The genetic relationship among these cultivars suggested 4 well-differentiated groups of c' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
Worldwide grown and consumed tomato (Solanum lycopersicum) crop is used as a model crop for new cultivar and fruit development. Genetic and genomic research of Indian tomato cultivars will provide an insight to develop new breeding strategies and crop improvement. The present study aimed to identify the high quality common and unique SNPs and INDELs, present in 9 different Indian tomato cultivars using double digest restriction site-associated DNA sequencing (ddRAD-seq). A total of 36.8 million raw reads was generated for selected 9 samples and an average of 94% high-quality reads of each were uniquely aligned to the reference tomato genome (SLv3.0). Out of 6,957 SNPs and 188 INDELs, a total of 1,165 SNPs and 68 INDELs were found in genic regions. The genetic relationship among these cultivars suggested 4 well-differentiated groups of c
ddRAD-seq; INDELs; SNPs; Tomato