Discovery of genomic variants associated with genebank historical traits for rice improvement: SNP and indel data, phenotypic data, and GWAS results
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'This dataset provides supporting information for Sanciangco et al (submitted) consisting of:A) file list, tables of phenotypes for quantitative and categorical traits and trait descriptions, and tables of SNP/indel numbers for Filtered, LD-pruned and subpopulation datasets (7 files named as '00_*');B) plink files for Filtered and LD-pruned SNP/indel datasets for all genotypes and for indica, japonica and aus subsets (15 fIles named as '01_*');C) EMMAX results on Filtered dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (144 files named as '0[2345]_*');D) EMMAX results on LD-pruned dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (72 files named as '0[6789]_*');E) EMMAX results on LD-prune' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["genetic resources","GWAS","indel","morpho-agronomic traits","rice","SNP"]} <|eot_id|>
 Here is the Description of a dataset. Description:'This dataset provides supporting information for Sanciangco et al (submitted) consisting of:A) file list, tables of phenotypes for quantitative and categorical traits and trait descriptions, and tables of SNP/indel numbers for Filtered, LD-pruned and subpopulation datasets (7 files named as '00_*');B) plink files for Filtered and LD-pruned SNP/indel datasets for all genotypes and for indica, japonica and aus subsets (15 fIles named as '01_*');C) EMMAX results on Filtered dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (144 files named as '0[2345]_*');D) EMMAX results on LD-pruned dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (72 files named as '0[6789]_*');E) EMMAX results on LD-prune' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
This dataset provides supporting information for Sanciangco et al (submitted) consisting of:A) file list, tables of phenotypes for quantitative and categorical traits and trait descriptions, and tables of SNP/indel numbers for Filtered, LD-pruned and subpopulation datasets (7 files named as '00_*');B) plink files for Filtered and LD-pruned SNP/indel datasets for all genotypes and for indica, japonica and aus subsets (15 fIles named as '01_*');C) EMMAX results on Filtered dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (144 files named as '0[2345]_*');D) EMMAX results on LD-pruned dataset for 12 quantitative traits on All, Aus, Indica, and Japonica genotypes and corresponding Manhattan and QQ plots (72 files named as '0[6789]_*');E) EMMAX results on LD-prune
genetic resources; GWAS; indel; morpho-agronomic traits; rice; SNP