Differential expression analysis of Lactiplantibacillus plantarum transcriptome during growth in EET-conducive conditions
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'DESeq2 analysis of L. plantarum transcriptome data using the Wald test in the R-studio shiny app DEBrowser (ver 1.14.2) was used to quantify differential gene expression based on culture conditions stimulating extracellular electron transfer (EET) (methods described here: https://doi.org/10.1101/2021.05.26.445846).The significance cutoff for differential expression was set to a False-discovery-rate (FDR)-adjusted p-value  0.5. Clusters of Orthologous Groups (COGs) were also assigned to genes based the eggNOG (ver. 5.0) database.L. plantarum raw RNA-seq data are available in the NCBI Sequence Read Archive(SRA) under BioProject accession no. PRJNA717240' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["Extracellular electron transfer, lactic acid bacteria, quinones, ferric iron, oxidation-reduction, fermentation"]} <|eot_id|>
 Here is the Description of a dataset. Description:'DESeq2 analysis of L. plantarum transcriptome data using the Wald test in the R-studio shiny app DEBrowser (ver 1.14.2) was used to quantify differential gene expression based on culture conditions stimulating extracellular electron transfer (EET) (methods described here: https://doi.org/10.1101/2021.05.26.445846).The significance cutoff for differential expression was set to a False-discovery-rate (FDR)-adjusted p-value  0.5. Clusters of Orthologous Groups (COGs) were also assigned to genes based the eggNOG (ver. 5.0) database.L. plantarum raw RNA-seq data are available in the NCBI Sequence Read Archive(SRA) under BioProject accession no. PRJNA717240' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
DESeq2 analysis of L. plantarum transcriptome data using the Wald test in the R-studio shiny app DEBrowser (ver 1.14.2) was used to quantify differential gene expression based on culture conditions stimulating extracellular electron transfer (EET) (methods described here: https://doi.org/10.1101/2021.05.26.445846).The significance cutoff for differential expression was set to a False-discovery-rate (FDR)-adjusted p-value  0.5. Clusters of Orthologous Groups (COGs) were also assigned to genes based the eggNOG (ver. 5.0) database.L. plantarum raw RNA-seq data are available in the NCBI Sequence Read Archive(SRA) under BioProject accession no. PRJNA717240
Extracellular electron transfer, lactic acid bacteria, quinones, ferric iron, oxidation-reduction, fermentation