Sequence variations data on 292 pigeonpea lines for understanding genetic relationships and genome-wide association
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'This data contains sequence variation information on 292 pigeonpea lines. The sequence variations were obtained through paired-end sequencing  on an Illumina HiSeq 2000 sequencer. Paired-end resequencing reads were mapped using BWA7 (ver. 0.5.9) with default parameters onto the pigeonpea reference genome. Mapped reads were converted into BAM files using SAMtools (ver. 0.1.18), and duplicate reads were removed with SAMtools. Genome coverage of mapped reads on the reference genome was estimated using GATK (ver. 1.4-11). After removing duplicate reads, variants including SNPs and indels were detected using BCFtools (ver. 0.1.17)in SAMtools. Captured variants were annotated with ANNOVAR (ver.2011Nov28) and SnpEff (ver. 3.2). For these variants, SNPs were countedwith VCFtools (ver. 0.1.10) and a hapmap file has been provided here. Sequ' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["Genomics"]} <|eot_id|>
 Here is the Description of a dataset. Description:'This data contains sequence variation information on 292 pigeonpea lines. The sequence variations were obtained through paired-end sequencing  on an Illumina HiSeq 2000 sequencer. Paired-end resequencing reads were mapped using BWA7 (ver. 0.5.9) with default parameters onto the pigeonpea reference genome. Mapped reads were converted into BAM files using SAMtools (ver. 0.1.18), and duplicate reads were removed with SAMtools. Genome coverage of mapped reads on the reference genome was estimated using GATK (ver. 1.4-11). After removing duplicate reads, variants including SNPs and indels were detected using BCFtools (ver. 0.1.17)in SAMtools. Captured variants were annotated with ANNOVAR (ver.2011Nov28) and SnpEff (ver. 3.2). For these variants, SNPs were countedwith VCFtools (ver. 0.1.10) and a hapmap file has been provided here. Sequ' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
This data contains sequence variation information on 292 pigeonpea lines. The sequence variations were obtained through paired-end sequencing  on an Illumina HiSeq 2000 sequencer. Paired-end resequencing reads were mapped using BWA7 (ver. 0.5.9) with default parameters onto the pigeonpea reference genome. Mapped reads were converted into BAM files using SAMtools (ver. 0.1.18), and duplicate reads were removed with SAMtools. Genome coverage of mapped reads on the reference genome was estimated using GATK (ver. 1.4-11). After removing duplicate reads, variants including SNPs and indels were detected using BCFtools (ver. 0.1.17)in SAMtools. Captured variants were annotated with ANNOVAR (ver.2011Nov28) and SnpEff (ver. 3.2). For these variants, SNPs were countedwith VCFtools (ver. 0.1.10) and a hapmap file has been provided here. Sequ
Genomics