Genome wide SNPs data generated using GBS on forage type hybrid parents in Pearl millet
<|begin_of_text|><|start_header_id|>system<|end_header_id|> You are a research archivist expert in dataset metadata. Answer the question truthfully.  <|eot_id|><|start_header_id|>user<|end_header_id|> Here is the Description of a dataset. Description:'This data set contains single nucleotide polymorphism (SNP) markers identified by genotyping by sequencing (GBS) approach, and was used to identify marker-trait association for forage quality traits crude protein (CP) and in vitro organic matter digestibility (IVOMD) among 105 forage type hybrid parents. The DNA of 105 hybrid parents was genotyped using GBS by digesting DNA with ApeKI endonuclease restriction enzyme. PCR (Polymerase chain reaction) amplification of pooled amplicons was carried out before sequencing on Illumina Hiseq2500 platform. Raw sequencing reads and barcode information were processed for SNP identification from the published pearl millet reference genome using TASSEL v4.0 software. Barcode containing reads were retained and used for SNP calling. These reads were trimmed to 64 bp from barcode side, aligned against e' . Please return only a json list of at most 3 Keywords corresponding to the Description:.<|eot_id|><|start_header_id|>assistant<|end_header_id|> {"Answer" : ["Crude protein","Digestibility","Forage yield","Genetic marker","Pearl millet","SNP"]} <|eot_id|>
 Here is the Description of a dataset. Description:'This data set contains single nucleotide polymorphism (SNP) markers identified by genotyping by sequencing (GBS) approach, and was used to identify marker-trait association for forage quality traits crude protein (CP) and in vitro organic matter digestibility (IVOMD) among 105 forage type hybrid parents. The DNA of 105 hybrid parents was genotyped using GBS by digesting DNA with ApeKI endonuclease restriction enzyme. PCR (Polymerase chain reaction) amplification of pooled amplicons was carried out before sequencing on Illumina Hiseq2500 platform. Raw sequencing reads and barcode information were processed for SNP identification from the published pearl millet reference genome using TASSEL v4.0 software. Barcode containing reads were retained and used for SNP calling. These reads were trimmed to 64 bp from barcode side, aligned against e' . Please return only a json list of at most 3 Keywords corresponding to the Description:.
This data set contains single nucleotide polymorphism (SNP) markers identified by genotyping by sequencing (GBS) approach, and was used to identify marker-trait association for forage quality traits crude protein (CP) and in vitro organic matter digestibility (IVOMD) among 105 forage type hybrid parents. The DNA of 105 hybrid parents was genotyped using GBS by digesting DNA with ApeKI endonuclease restriction enzyme. PCR (Polymerase chain reaction) amplification of pooled amplicons was carried out before sequencing on Illumina Hiseq2500 platform. Raw sequencing reads and barcode information were processed for SNP identification from the published pearl millet reference genome using TASSEL v4.0 software. Barcode containing reads were retained and used for SNP calling. These reads were trimmed to 64 bp from barcode side, aligned against e
Crude protein; Digestibility; Forage yield; Genetic marker; Pearl millet; SNP