Datasets:

multimolecule
/

bprna-new

id stringlengths 12 23	sequence stringlengths 33 489	secondary_structure stringlengths 33 489
AACY020454584.1_604	ACUGGUUGCGGCCAGUAUAAAUAGUCUUUAAGCCGCAAGCGUGUCCUGGAGUUAAUCUUCCAGGGCGGUAGCA	((((........)))).........((..............(((((((((........)))))))))..))..
AACY021048934.1_360	GCUCGGUGCGGCGAGCCUAAAUAGUGCCUUAGGCCGCACGCGUUAUGCAUAGGUGGCA	((((........))))........((((..............((((()))))..))))
AACY021109846.1_859	GGGGGACGAAGUCGAACUGAACACCUCCAUCGUGGUGUCCCCCGGGCAACGCUUGCAAAAGCGGCUAACGUUCAG	(((((((...............(((........))))))))))......(((((....)))))............
AACY021449234.1_672	AUCUCACAACGUUAAUCGCCUCCUCGUGGCGUGAGAUGGAAACAGCAUAUUUGCAAAUAUGUUGGCUAAGAUUAACAG	(((((((..........(((.......)))))))))).....(((((............)))))..............
AACY021702793.1_630	ACAUUUUGUGGUUUUAAGGGUUAAUCCUUAAGGUUGAUAAACCUUGACAAGCCUAUGGGGCUACUAUAGUAUUCUCUUAUUACGGGUAAGAGUAUCAAGCAUAAGCGAAAUUCCGUGCUUAUGUAAUGCUAAGUUAGUGCAGACUUAAAAAUUAGGC	...........................((((((........))))))...(((((....(((....(((((((.(...............................................).)))))))....)))..............)))))
AACY022661277.1_934	ACUGGACUACGCCAGUAUAAAUAGGCAUUAAGCGUAGUGCGUUCCAAUGUUGUGAAACAUCGGAGGUUGUU	((((........)))).......((((..............((((.((((......)))).))))..))))
AACY022753348.1_678	AGUCGACUAAGCGACUCUAAACAGCAUUUAGGCUUAGUGCGUUCCCCUGCUCACGCGGGGGAGGUAUGG	((((........))))........(((..............(((((((((....)))))))))..))).
AACY020454254.1_1909	AGUCGUUUGGGCGACUAUAAACAGACGAAUAAGCCCAAAGCGUUUCCUCGUAAGAGGAAGGACGGA	((((........)))).........((...............(((((((....)))))))..))..
AACY020454584.1_1474	ACUCGUCUGAGCGAGUAUAAAUAGGCUUUUGGCUCAGAGCGAUUCCUGGAGCGCUGUUUCCAGGGAUGUAGCA	((((........))))........(((..............(((((((((........)))))))))..))).
AACY020496190.1_1503	AGUCGUCUAAGCGACUCUAAAAAGGCUUUAAGCUUAGAGCGUUCGCCCAUAUUGGGCGAGGUUGUA	((((........))))........((...............(((((((.....)))))))...)).
AACY023396520.1_1459	AGUCGGUAGAGCGACUUUAAAAAGGCAUUAGGCUCUACGCGUUCCAGGAGGAAACUCCUGGAGGUUGUU	((((........)))).......((((..............(((((((((....)))))))))..))))
AACY023459782.1_1089	UGAUGAGGGGCGGGGGGCCAGAGACCCCCCGUUAAAUCGCCAUGUCAACCGACAUGCUGGUCCCAAGCCCAG	.(((.....((((((...........))))))...)))..................(((..........)))
AACZ03123677.1_4633	GACAGGAGGAAACGCAGCGCCAGCAGCAUCUCAUCUACCCUCCUUGACACCUCCUCCCCGUGGCUCCAGCCAGACCCUAGAGGUCAGCCUUGCGGACCAACAGGAGGACUCCCAGCUUUCCCUUUUCAAGAGGUCCCCAGACACCGGCCACCCUCUUCCAGCCCCUGCGGCCAGUGCAAGGAGGCACCAAUGCUCUGAGGCUGUCGCGUGGUGCAGCGUCGAGCAUCCUCGCCGAGGUCCUUUCUGCUGCCUGUCCCGCCUCACCCCGCUCCAUCACACCAGCUGGCCCUCUUUGCUUCCUUUUCCCAGAAUCGUUAAGCCCCGACUCCCACUAGCACCUCGUACCAACCUCGCCCCACCCCAUCCUCCUGCCUUCCCGCGCUCCGGUGUCCCCCGCUGCCAUG	..((((((((...((((.((.(((((............((((((((.(((..........(((((.(((.........(((((...((((((.(((((...((((((.............)))))).....))))).))).....)))...)))))........))).)))))))))))))))).....((((((.((.((((.(((...))))))).))))))))((((...))))......)))))))))))..........((.(((..........))).))......................((.(((........))).))......((................)).........)))))))).........((..(((......)))..))....
AAGJ04114413.1_2461	AGGGAGGGAGGGGUAUUGGAACCAAACCUCUUAACCAACCGUCGCCCGUCCCAAGUCGGG	.((.....((((((...........))))))...))........(((..........)))
AAJM01000018.1_9079	UGUGUUUCACUCCUUUUACAUGUAUUGUAAACCUUCACACUAAUGUGAAGG	.............((((.(((((...................)))))))))
AAKY01000063.1_80713	CACUUCAUCUUUCAUCUUUGCACACCCGAAUUCCGCAGGGUUUUUCAAGUACCAGAGGUAGCCGGUUGCCGCGUGACGAAGGGAACAAAUCGACCAAAGAAGCGAGGACGGUCAUGCGAUCUGCCCGGAUUGCACUGAUGCUGACGAUCGUGCUUGCCGGUCCGUAUGCGUCGAACUUCGCGUAUGCGCAGCGCCCCGAGCAGGGCGCAUCGUCGCGCAA	................((((....(((...((.(((..(((...((...((((...))))...))..)))..)))..)).)))..)))).((.(.....(.(((((..(.((.....((((.((...(....(..(......)..)....)....)).)))).....))...)..).)))).)..(((..(((((........)))))..))).)))...
AALC02000098.1_4036	GAGAUCAAAGAAUCACCCUCGGUUGUUGGUUAAAUUAUUAUCUUGUCAAUCAGGAUUUUGGCGAAAUCUAAUGCUGUUAAACACCCGAUAAAUCAAUCAAUUCAAUAGUGAUAAUGGAGAGGAUGAUGAGUAAAAAGAAAGGGUUAACUACCGCA	.........((((.......(..(((((.(.(.......((..((((((........))))))..)).........).)......)))))..)......))))....((.((..(.......)..))..)).........((.....))......
AAQB01006145.1_104686	AGCACCAAAAUCAGUAACCAAGCGAAUGCUAAACUAGCUUGGGGACUACGCUUGGGUGCUCAAAUUGAUUUAACCGCUCGCUAUAAUGCCAAACAUAACAUUAAGAGCAUAACCUAAUCCUCGCUAUGCUUGUGGCCCUGUUUCGAGACAC	((((((......(((..((((((.............))))))..))).......)))))).........(.......(((..(((..((((.............((((((..(.........)..)))))).))))..)))..))))....
AAWL01000017.1_25112	AUAAUACAACAGGAACAGGCGGCUGCCGCGAGGCAGUGCAGCCGGGCGUUUGCAGCAGAAAGGCUCUGCGGGACCUGC	.........((((.....((.(((((......)))))...))...((....)).(((((.....)))))....)))).
AAXW01000073.1_3077	UCUAAAAUCGUGUGAUUUCGGUAUCUCCCAUUGAUAUUGAGUUCUCCUAGAAUACCUCGGUGAUGCGCCGAGGUUUUU	.....................................................((((((((.....))))))))....
AAYW02000017.1_89779	ACAGUACAAACUGAGCAGGCGGUGGGAUGACCACAGGGCCGGGCCACACAGGGUGGCAGCAGAUAAAGAAUGAAUUUAUGAUCUGCGGGACAGUA	.........((((.....((.((((.....))))...))...(((((.....))))).(((((..................)))))....)))).
ABBG01000012.1_1114	AAAUGCGCUACGGGGAACGAUAAAAACAGCGCGGGGGUAGCGUUGCUGGCACGCGUUCAGCGUGUCGGCAGCGGUUGUCUGCAUGCACGACGGGGCCAACCACCACAACAAACCAACAUGCAGGCACAUACGCCUAUUCAAUCGACGUUCCGCCGUCCGGCCGGGGGAAGCAGAGGUCAAUGCGGGCGGCGGCGGACGCAUUUUUUAC	(((((((((.((.(...............).)).))....((((((((((((((.....))))))))))))))..((((((((((.......((........))............))))))))))...(((.(.((...)).).)))(((((((.(((.(((.(...............).))).))))))))))))))))).....
ABFK02000017.1_466353	AGCCGUUCGGGCGGCUAUAAACAGACCUCAGGCCCGAAGCGUGGCGGCACCUGCCGCCGGUGGUA	((((........))))........(((..............(((((((....)))))))..))).
ABLN01000435.1_3857	GUCGACUGGUCAGAGGCUUUCUGUACAAGGUCAGACAGUAUCCCACCCGGCCCACUAGUGAAACUGGUUCAAUCCCAGUAUCGCGCACCACGAUUGACCUGCGGUUUCAUCCACAAAAUCUGGGCUGCGUGAACUAAAUGUGAACUGACUCGGUGCAACCACCGAAAGGUUCCU	((((.(((..((((.....))))..)).).)..))).......(((.(((((((...(((((((((..((((((...((.......))...))))))....)))))))))..........))))))).)))..........(((((...((((((....))))))..)))))..
ABLX01143204.1_55	ACUCGACAGGGCGAGGCUAAAUAGCAUUUAGGCCCUGAGCGGCUCCCUUCGGGAG	.(((........)))...........................(((((...)))))
ABLZ01250225.1_97	AGUCGUUAGGGCGACUAUAAACAGACAUUAAGCCCUAAGCGUCCCCUACUAGCUAGGGGGGUUGUA	((((........))))........(((..............(((((((.....)))))))..))).
ABMG01007509.1_2	GGUGAGCGGCCCCGCCCGUAAGGACGGGGACUAAACCACAAGUCCGGUCGCAAGUCCGG	(((.....((((((..........))))).)...)))......(((..........)))
ABNK01016853.1_25	AGUCGUCUGAGCGACUAUAAACAGAGUUUUAGGCUCAGAGCGCCUCCCCUUCGGGGGAGGGUACUA	((((........))))........(((...............(((((((....)))))))..))).
ABPA01000012.1_259180	ACACUCGACCAGAUUUUUUUGAUUUUCGAUUUCCAAACGCGAUUUAUUCCAAUCCGCCUUGUAGCAGACUAACCGGUGCACUUUUGCACGUGUACGCAAGAC	....((((..(((((.....))))))))).........(((...........((.((......)).)).......(((((....))))).....))).....
ABPY01006745.1_33	ACAGGUUUGCGCCUGUAUAAAUAGACAUUAAGCGCAAAGCGUCCCGCAAUUGUUGCGGGGGUUGUA	((((........))))........(((..............(((((((.....)))))))..))).
ABPY01006745.1_722	GCUGGUCACGGCCAGUAUAAACAGACAUUAAGCCGUGAGCGUCUCCUGUUCUGUGAACGGGAGGGUUGUA	((((........))))........(((..............(((((((((.....)))))))))..))).
ABQR01000046.1_117420	ACAGUACAAUCUGAUCAGGCCUUAAAGUGGAUGGAACGGAACAUCCAUGGAGGAGCCGGGCCGCUUUAGCGGCAGCAGGUAGGAAACACCUGCGGGACAGUC	..........(((.....((.((.(......................).))...))...(((((....))))).(((((.........)))))....)))..
ABSH01000027.1_84172	CAUCGCGAUGCUCUUCAGAGAUGGAGAAAUCGUGAUGAGGAUACUUUCAAAGCCCCAACUGAAGGAGUUGGUUUUGUACUCGCCGCAACAUGUCGCACGUCUGGAAAAGGCAGGCCUAUUCCCCAAGCGGGUACAGCUGGGCCCGAACAGAGUGGGAUGGGUCGAAGAUGAAGUGCUGGACUGGCUACAAACACGGAUGGAGGGUCGCGAGGAGGCCUGACCGACACUCCUCAUGUAGGAGUAUGGGUGGCCGGAGGUGCACACUUC	(((((((((..((((((....)))))).))))))))).................(((.((...(.(((((((((..(((((((..(.((.((((.(((..(((.....(((.(((.....(((.....)))....)))..)))....))).))).)))).)).)..).)).))))..))))))))).)......)).)))..((((((............(((...(((((.....)))))..))))))))).(((.......))).
ABSK01000052.1_27956	AUUGCGAGGACUUUAGCAAUGUAGGGGAUGAGCGGCAAAUUCAGGAUCAACAACACAAGGUUGCCGAUGAACAUCGACAUAAUGACCGCCCAGAAAAUCUGUGGAUCGUCAAUCAUCAGGCGUGGGCC	..(((.((....)).))).......((.(.(.((.(..((..(.((((.(((........(((........(((.......)))......)))......))).)))).)..)).....).))).).))
ABSN01019877.1_251	CGCAGAUGACGGUGCCACCACGGCACCGUAAUGCGACAAGCAGGUUCCAAUCCCUG	((((.....((((((.......))))))...)))).....(((..........)))
ABVR01000037.1_34959	GCUGCUCGAAUGAAUCACACACCUCUUUGUGGUGAGUAGCAGGCAACGAUCUAAGAAUCAGGGAUCCGGUGAUCGGCUGAGAUGUGAAG	(((((((.............(((.......))))))))))......(((((...................)))))..............
ABYA01000314.1_2329	AGUUCCGGUGCGGUCGGCGCCUUUCCCAAGAAACGCGAGAGGGAAAUGACCCCCCACCGAACCCACCCUUUCCCGCCCGGGACCUGCGCUCACUCGGGCGGGUGGACAUCACCGCUCGGCCGGCUUUUCGGGUGCCCCGCGGCUUUACGCUCAGCGCACACCACCGCAGAAAAGACUUCGGCCCCCGCCGGGACUGGCAUCCCAGUGCGAGGGCCUGACCACCAAGGAAGACGAGACCUUCCCG	......((((.....((((......................................................))))............((((((....))))))...............(.(............................).).........................(((((.(((.((((......))))...))).)))))....))))..(((((.......)))))..
ABYI02000012.1_66005	GCGGUACAAACUGAGCAGGCGAUGGAUCUUGUGUGAUCAGGUCCGUGGGGCCGGGCCGUUUUCGGCAGCGGAUGCAUGGCAUCCGCGGGACAGUA	.........((((.....((.(((((...............)))))...))...((((....)))).(((((.........)))))....)))).
AB546780.1_10221	AUCUUAAAUAGAAAGAGGGUUUGCAUAUGGACUUCACUGGUGUUAUUACAAGCAUUAUUGAUUUAAUCAAGACUUGCAUUCAGACUUUCGGUUAAGUUUUUUGUUUCAACGCAAUAAAAAAACAGAGGAAAUAUUCAACAAUUUGAUUGUUUC	......(((.(((((...(..((((....((.((((.(((((((......))))))).)))...).))......))))..)...))))).)))..................................((((((.((((....)))).))))))
ACCA01000039.1_31556	CGCCAUAUCAGUGAUAUGGUUGUUGUGUUAGAUAUUGUUAUAAUGAUCCGGAUGAUUUUUAUGAAAAAGACAUUAUUGGCCAGUUCUUUG	.(((((.........)))))..........((((.((((((((.((((.....)))).))))))......)).)))).............
ACCB01000005.1_85822	CUAUCUGAGUCUGGGGCCAAUAGGUUUGCAGCAAUGCUCUGGUCGCCGUAAUACCGGCCUUUAAUGACUAUUAAUACAGACCUGAUAAUCAUAUUCACUGAUGACGUCAAAAGGGUUCUUAUGACACAACAGCCGCAAGUCAAAUACCGU	...((((.((..(((((.....(((...................))).........))))..........)..)).)))).................(((.((..((((...((....)).)))).)).)))..................
ACCC01000032.1_17493	AACCUAAUGUUGGUUAAUGCUACAUCAACUAGGUAGACACAAUCCUUUGGAGUAGAACAUGAGCGAUAAAAUUAUUCAUCUGAGUGAC	.......(((((.(((...((((.(((...(((..........))).))).))))....))).)))))...((((((....)))))).
ACCJ01000536.1_4231	CGCAGAGCAACGGGGCAGCAAUGCCCCGGUAAUGCGGGGGAACGGUUGCAACCCCGU	((((......(((((........)))))....)))).....(((..........)))
ACCJ01000322.1_14085	AUGGCAUAAAGGAAACAGGCCGCGGGCGGCAGCGCGCGGGCCGGGCCGCAUUAGCGGCAGCAGGUGGAUCAGGCGGCAUCUGCGGGACAAUG	.........(........((((((.(......).))).)))...(((((....))))).(((((..............))))).......).
ACCL02000009.1_43428	ACAGUACAAACUGAGCAGACCGUAACAGUCCGUUAUGGAGUCGGGUCACAUGCGUGACAGUGGAAAUGUUCAUCCACGGGACAGUU	.........((((.....((.(((((.....)))))...))...(((((....))))).(((((........)))))....)))).
ACEY01000129.1_49787	GGUUCCGGUGCCGUCGGUGCCCUACCAAGACAAGAAACCGGGGGAAAUGACCCCUACCAAGCCCCACCCCUCCCGCCCGAGGCGCUUCGUCACUCGGGCGGGUGAACAUCACCGUUUGAGCUGGAUUUCGGGGCCCUCAACUCCCCUACUCUCAGCGCAAACAAACACAUCUGAAAAGGCAUCGGCCCCCGCUGGGACUGGCAUCCCGGUGCGAGGGCCUAACCACCAAGGAAGAAGAGAGCUUCCCG	......((((.....((((......................................................))))............((((((....))))))..............(((((...........................)))))...........................(((((.(((.((((......))))...))).)))))....))))..(((((.......)))))..
ACEZ01000164.1_104333	CGCUCCGGUGCCGUCGGCGACUGAAAGGCGAAGAACCCCCGAGGGAAAGAACCCCUGCCAAGCCCCACCCCUCCCGCCCGCGUCCCGUGCUCACUCGCGCGGGUGAACCUCCCCGGACCGGCUGGAUUUCGCGGCCCUCGAGGCCCGACGCUCAGCCCAACGCACCACCACAACCGCAGACAUGCGACGGCCCCCGCCGGGACGGCAAUCCCAGUGCGAGGGCCUGACCACCGAGGAAGAUAGAGGCUUCCCG	......((((.....((((.......................................................))))............((((((....))))))..............(.(((..........................)))......)...........................(((((.(((.((((......))))...))).)))))....))))..(((((.......)))))..
ACFP01000103.1_1040	UUUGCCUCAAACACAAAGGUGUCAUCCCAGUGCUUGACACUGGGAUCCAGUAAAAUUGAUUGUGAACAAGCACACUAUACAACAUUUUCAAUGAAAUUACAAAAAAGCUGGAUUCCAGUGUCAAGCACUGGAAUGACACCAUUUGCUGUGCAAUUU	...........((((....((((((.((((((((((((((((((((((((.........................................................)))))))))))))))))))))))).))))))........))))......
ACIE02000035.1_129003	ACAGUACAGACUGAUCAGGUCAUAAGACCGGGCUGUUAAAAAAACAGCAGCAGAUGAAAUUAACAGCAUCUGUGGGACAAGUG	.........((((.....(((....)))...(((((.......))))).(((((..............)))))....)).)).
ACII01000060.1_3924	GCUGCUCAGAAAUGCACACUGCGACUGGUGAGCAGUAGGUGAUGUUUAUCAAAGGAUAAGCGGCUAAGAUGUAGAA	(((((((..........(((......))))))))))......(((((..........)))))..............
ACII01000103.1_12160	ACAGUACAAACUGAGCAGGCGAUGCCCGAGAUGCUUGAGGGCGUGGGGCCGGGCCGCGCGAAGCGGCAGCAGAUAUGAAAAUUUUCAGACAUAUCUGUGGGACAGUG	.........((((.....((.(((((.............)))))...))...(((((.....))))).(((((....................)))))....)))).
ACIO01000756.1_6332	ACAGUACAAACUGAGCAGGCAAUGUCUGAUCAUGCGACAUGAAGCCGGGCCGCUUCGGCGGCAGCAGAUGGGUAUCAGGCGCAUCUGUGGGACAGUA	.........((((.....((.(((((.........)))))...))...(((((....))))).(((((...............)))))....)))).
ACTP01000040.1_119838	ACAGUACAAACUGAGCAGGCUGUGUUUUCUGCCGGCGUAUGUAUUUCAAGCCGGAAAGGAUCCAUGGAUAGCCGGGCCGUUUUGACGGCAGCAGAUGGAGCUUACAUCUGUGGGACAGUA	.........((((.....(((.(((......................................)))...)))...(((((....))))).(((((...........)))))....)))).
ACUL01000219.1_9374	ACGGGUUUACCCCCGAAUCGAGCCUUGUGGUCUGUCCAGGCAUCAUUUAUAUGAGCCGCUCGAAUAACACUAAACUAAAAUCCAGGGUAAAC	....((((((((.....((((((....(((.....)))(((.((........))))))))))).....................))))))))
ACUP01006700.1_43239	GAAUUCUCUAAAAGAGAUCUUUUUCUGCUCUUUGAAGAAAGAAGGGUCUUUGCUUGAUUUUGGAGAUGUCUCUGCUCUCAGAUCU	....((((((((((((((((((((((.........))))..))))))))).......)))))))))....((((....))))...
ACWC01000004.1_40409	AGUCGUGGCGGCGACGUUAAAUAGGCAUUAAGCCGCCAGCGUUCCCCUCAUUGGGGAGGUUGCA	.(((........))).........(((..............((((((.....))))))..))).
ACXX02000003.1_385221	AAACUAUAAUUUAGAGCAGGCGAUGCAGCUGUAGACCUUUUAAGACAGUUGUGUGGGGCUGGGCCGAAACGGCAACAGGAUAUAAACCUGUGGGACUAAG	.........(.(((.....((.(((((......................)))))...))...((((...)))).(((((.......)))))....)))).
ACYV01000002.1_98152	UCGAUUUUAAGAUAACUUUACGUGGAUGGCUUUCUGCGUUUAUUUAUUAUUUAUAUAUCUUCAAAGUAGAACGCAAUG	((.(((((((((((.....(((((((......)))))))................)))))).))))).))........
ACYY01000023.1_29669	GUUUCUUGCUGAACCCCACCUCCUCCCGGGGUUUCUGGCAAACGCGGCGGCACUGAUCCUCCUCCCCAGUGCCGCCGCAGCUU	......((..(((((((..........))))))).)).......((((((((((.............))))))))))......
ACZG01000001.1_1182032	UUUGAUUUGCCCCACCAUUUCGAGCCUUGCAGCACAAGCUGGAUAUCCUUUUUGAGUGAAUCGCUCGACUAACACUAAACCAAAGAUAGGGCAAAU	....((((((((.......((((((....((((....))))(((.((..........)))))))))))....................))))))))
ACZG01000001.1_1258665	AUUGAUUUGCCCCCAAACAGAGCCUAGUGGCGCAAGCCUGGUAUCACUUUUGAGUGAACCGCUCGAUCAACACUAAACAAAAUCAGGGCAAGU	....((((((((.......((((.....(((....))).(((.((..........))))))))).....................))))))))
AC018761.6_48391	GGCCUCAAGUGAUGGAGAGCAAUACCCGGGGAUGACUGUGACCACAUUGGGAUGUAUUCGUACUGUCUGAUGGGGCC	(((((((...(((((...(((((((((.((..((........))..)).))..))))).)).)))))...)))))))
AC069351.5_37957	AGCUGAAGAGCUGAUGAUGUUCCCCUAAAGCUGAAGCUCUUAAGCU	((((.(((((((......................))))))).))))
ADAV01000062.1_11136	GAGGACAGAAGUUUCUCGCAAUUAAAAUUUAUCAGUUUUACUUUCUGCUCUCUGGAAACGCCUGCUUCUUUUUUCCCCGAGAGCAUUUUUUCGCAUUCCGAUUUGGUUAACUUUGUUUUUUGAGUACCUUGUCCAGUUAGUAGGAGUGCCACCUUCCUUUUCAAUAGUGGCGGUAAUUUU	.(((((.(((((((..........)))))..)).)))))..((((((((..(((((......((((.(((........)))))))....((((....(.((..........)).).....)))).......)))))..))))))))((((((..............))))))........
ADCZ01000007.1_276193	AUUCGACUAGACGAGUAUAAAUAGGUGUCAGGUCUAGUGCGGCAGGGUUCUUCCCUGCAUCAUA	((((........))))........(((..............((((((.....))))))..))).
ADCZ01000007.1_277655	AAUCGACUAGGCGAUUUUAAAUAGGUGUUAAGCCUAGUGCGGUAAGAGGUAUAACCCUCUUGCGUCACG	((((........))))........(((..............((((((((......))))))))..))).
ADDF011338994.1_3988	UGGGCAUGUGAUGUGACCUUCCUGAGCCUGCAUUCCCUCACCUGGAAAUGAUGAGCAGUUACUGAUGCCACA	..(((((.....(((((.....((..(.(.((((.((......)).))))).)..)))))))..)))))...
ADDX01000036.1_19553	GCGCCCCAUACGGAACAGGCCGUAAAGGAGCCGGGCCGCUGCGGCGGCAGCAGAUGGUGAGGCAUCUGUGGGACAAAA	((...........................))...(((((....))))).(((((..........))))).........
ADFP01000095.1_5329	ACGGCACAAACUGAACAGGCCGUCCCCUCGGGGAGCGGGCCGGGCCGCCGCGGCGCGGCAGCGGACGACGAUCCGCGGGACGGAA	..........(((.....(((.((((....))))...)))...(((((......))))).(((((......)))))....)))..
ADGC01006520.1_5852	UAACUUUGAACUGAGCAGGCAAUGCAGCGCAUGAGGCCGGGCCCGAGAGGCAGCAGAUUGAAACAACAAACAUCUGCGGGACAGUA	.........((((.....((.((((...))))...))...(((.....))).(((((...............)))))....)))).
ADGO01024387.1_128	AGUGAGGGGAUCGAUCUAAACUACUGGCUUGUUUCGUGCAAGUCACCGGUCCCAAGUCCGG	(((.....((....))...))).......................(((..........)))
ADGO01160766.1_269	CGCAGAGGGCAGCCCUUCGGGGCUGUAAUGCACUCCCCACCUGGGGAGCGGUCCCAAGUCCGC	.(((.....((((((....))))))...)))................(((..........)))
ADGO01161384.1_289	CGCAGAGCACGCCCUACGGGGCGUAAUGCGGCCUCACCACUGGGGUGAGCCAGUUGCAAGCCUGG	((((.....(((((....)))))...))))...................(((..........)))
ADJS01012726.1_612	GAGCAACUUAGGAUUUUAGGCUCCACCGCGGCUUGCUGCGGUGCAAACCCCGCAAGCCUGGCGGUCUUGCGCGCGGUCAAAAUCUAUCCGCCGGAG	..........(((((((......(((((((((..)))))))))...(((.((((((.........))))))...))).)))))))...........
ADJS01001306.1_1758	ACAGUACAAACUGAACAGGCCGGAUAUCUUAUCUGGGGCCGGGUCACAACGUGACAGUGGAAUGAAUUGUUUUAUCCGCGGGACAGUA	.........((((.....((((((((...)))))..)))...(((((...))))).(((((.............)))))....)))).
ADJS01006913.1_2727	GCAGUACAAACUGAUCAGGCUACAUUCAUUUUCAAAAAGAUGAUGUUAAGAAAAUGGUGUGCAUGCCGGGCCGGUCAAUUACCGGCAGCAGAUGAGACGAUGAUUCAUACAUCUGUGGGACAGUA	.........((((.....((.(((((.............................)))))....))...(((((.......))))).(((((...................)))))....)))).
ADJT01005907.1_1108	UCCGCUCGAAACUUUGCACACCUCUACGCGGUGGGCGGCAGGCAACACAGUGUGUAGAUGCUGUGGCAAAGAAUGCAAGA	.((((((............(((.......))))))))).......(((((..........)))))...............
ADJT01006171.1_2802	CCGGAUAUUUUGGCAGGGCUGCACCGGGCAAAGCAACCCCGCCCCAUCUUCCC	............(..(((.(((..........))).)))..)...........
ADJT01008886.1_61472	UGCAGAGUGAGAAAGCUCAUUACCGUUUGGUGAUGGGCUUUUGUAAUGCAGAGCGCCGGUCACAAUCCCGG	.(((......(((((......................)))))....)))......(((..........)))
ADLR01000090.1_3100	AUAUGAUACAGUGAGCAGGCGACGGCCGAAAUGAGAAUCGUCGCCGGGCUGCCGAAAGGCGGCAGCAGACUGUGUGACAGCACAUCUGCGGGACAGUU	.........(.((.....(((((((............)))))))...(((((......))))).(((((...............)))))....)).).
ADTP01000150.1_17338	AACCUUUAGUUGGUUAAUGUUACACCAACAACGAAACCAACACGCCAGGCUUAUUCCUGUGGAGUUAAAUAUGAGCGAUAAAAUUAUUCACCUGACUGAC	........((((.(((...(.((.(((...(.(......................).).))).)).)....))).))))....(((.((....)).))).
ADUU01000026.1_72568	UUUUUACGCCUCAAACUUUCGUUUUCGGGUCAUUUCGUCCAGACUUAAGUUCACAACACCUCACC	.............(((((..((((..(((.(.....))))))))..)))))..............
AECF01000037.1_53384	UGGGGUCAACUUUGGUACGGAAGCAGAUCGAAAAAUAGCUACUUUGUUAUUUGUCGUUGCUCUAAAAAGUCAACGGCAACUAAGCAUGCUUCAAGAAUUAGCUUUUUUCUGUUCAGAUCUCGAAAACAUUCAGCGGCUCAGUGAUUGUCGAACAAUAGAUGAAGCGCAAAAAAUUCUGGCUCAAGCCUAAAGUUACGUCUGAAAAAAUCAAUUCAAUUUGAAAUGUUCAAUAAUUAUUGAAAUAAUUUUAUAUUAAAAAAUAAAAUAUUUUAAUUUAAGAGAUCAAACAAAAAAGAUAAGAAGAUUCCUUGACAAAAAAUAGGCCCUAUGAUAAAUUUAAGGUAACUUGUGACAAAGUCGUGCAUGGAUGCACUAAAAAGACACCCUAUCAGUAGUAGGGUGUCUUUUUUUGC	...((((..((((......))))..))))...........((((((((((.....((((((.((((..((((..(((..(((........(((((((((..(((((((.((((..(((((.(((.............(((((((((((.(((((.((((((.(((............(((....)))....))).))))))......((((......))))..))))).)))))))))))....(((((((........))))))).......))).)..)))).)))).))))...)))..)))).))))).......))))))...))))...)))).))))))..)))))))))).(((((....))))).(((((((((((((((.....)))))))))))))))....
AECU01000025.1_4723	GCUGUCCGAAAAUGCUGCCUCUACGUGGCGGACGGCAGGCAACGGAGCGUGUCUCCGGCUAAAGCAUGA	(((((((.........(((.......))))))))))......(((((.....)))))............
AEDB01000020.1_61018	ACAGUACAAACUGAUCAGGCGAUAAACCCCAAAUUUUAAGGUUUAUGCAGCUGGGCCAUAAACGGCAGCAGAUGAAAAAUAUAACACAUCUGUGGGACAGUG	.........((((.....((.(((((...............)))))...))...(((.(..).))).(((((................)))))....)))).
AEDB01000024.1_46397	AAUAUAAAAAUAGAGCAGGCGAUACACCUAAUAAGGUGUGUGGGGCUGGGCCGACGAAAGUUGGCAACAGGUGAAAAAUACCUGUGGGACUAUA	.........((((.....((.(((((..........)))))...))...(((((......))))).(((((.........)))))....)))).
AEDB01000052.1_16213	ACAGUACAAUCUGAUCAGGCGAUGAAUGCGAAUUCAUGGUGCCGGGCUGCUUCAAAUAGCGGCAGUGGGUGAGUGAUACACACAUCUACGGGACAGUA	..........(((.....((((((((......)))))..)))...(((((........))))).(((((...............)))))....)))..
AEJN01000022.1_11402	CAAGUACUAAAUUUUUUACUUGAAUUAUUGACAUAAAAUAACUGCUUAUAAACCAAGAAGAAUUUUUUGCGUGGUAAAAAUCGCAUUAUUAAAAAUUUGUGUAAAGGGACAAAUUUU	...(((..((((((((..((((..((((...((.........))...))))..))))))))))))..)))(((((....))))).......(((((((((........)))))))))
AENG01000001.1_255918	CAUAAAUAUCUUGUAUAUUUAUAAUAUUGGCAGUGUAGUUCUUGCUGGCUCUGGGUGACGAGAGAUCUCGAAAUCAAGAGAUUGAACCAAAAAAACAACUCUUUUUAUAAGAGUUGUUUUUUUA	.((((((((.....))))))))...............((((..........((((...........)))).............)))).(((((..((((((((.....)))))))))))))...
AENI01006267.1_25045	UUUAUUUUUAGCCUUGUGAUGAUGAUAGUAUAUCUUCGAGUGGUGCCGCUUGUUUGUUUUUUGCCGAGACCCAUCAUCUCCA	.................((((((((.(.....).)..(((((....)))))(.((.(........).)).))))))))....
AERA01001428.1_285	ACUCGUUAGGGCGAGUAUAAAUAGCCAUUAGGCCCUAAGCGUCAAUGAUAAGCUCAUUGGGUUGGA	((((........))))........(((..............(((((((.....)))))))..))).
AEUX02000007.1_442608	AAGUCUGUUUCAGAAAACAGAAACCCAGGUCAAGUAAGUGUUCUCACUUACAAUAACACAGUUAAUGAUGGGGCAACUCAAAGUUAA	...(((((((....)))))))............((((((......))))))..........(((((..((((....))))..)))))
AEVN01000015.1_26987	ACAGUACAAACUGAUCAGGCGGUAAACCUUCUUCCGGGUUUUUGCAGCCGGGCCCUCUGGGCAGCAGACCUUGACGCAACGUCUGCGGGACAGUU	.........((((.....((.(.(((............))).)...))...((((...)))).(((((.............)))))....)))).
AEXQ01000083.1_43353	ACAGUACAAACUGAACAGGCAGCGACUAAGUCGUGUGGCCGGGUUGCUUAGCAACAGCAGAUUUAAUUAUUCAUAUUGAUGAUAAUUAACAUCUGUGGGACAGUA	.........((((.....((.(((((...)))))...))...(((((...))))).(((((..............................)))))....)))).
AE004437.1_34775	ACGUAUCUCCGAGUCCCGUCACGGAUGGCGGUGAUAGGAGUAACGGCUGGUUGGCACAGCCAUCGACGUUCCUGUUUGACAAUGAAACUGGUGCGUUCGCACCUCAAGAACAGGCUACGUCGUAAACCAUAAUAUCCCAACGCGGUCGGGAAUCCUCGCCCUUCAGGGCGGGGA	..((..((((..(((((((((....)))))).))).))))..))(((((.......)))))..((((((.(((((((............(((((....)))))....)))))))..))))))............((((.((...)).)))).(((((((((....)))))))))
AE016831.1_55455	GGCAACUUGCCUCCGAUUGGGGGUGCUGUUUAUGUACGAACUUAUGUCUUUGGUUAUUGCCCCACUUUUUGUGGGUCUAGUAAUCUUACUAGUUGACCAUUGGUUAGAUGAUUAGCAGAUAACCAUGCAAGUUGUCCUAGCCCACACGUCUAUCCGCAAGACGAAAAA	((((((((..((((....))))((((.......)))).............(((((((((((((((.....))))).((((((....))))))((((((...)))))).......))).)))))))...))))))))..........(((((.......))))).....
AE016833.1_63483	GCGAAACGACAUUAAAUCGUACAGAUAACACAAAAAGCAAUCCUACGGCGAAUAGGAUUGCUUU	.....((((.......)))).............((((((((((((.......))))))))))))
AE004091.2_182693	CGUCGCCGUAGCAACGCCGGGCAUACCCUGCCCGGCGUCGGGGCGGAUGGCCCACCCGCCGUCCGCUCUCCUUCCCCCCGCACAGACUCUGCUACGGCGGCGCCCCCUUCCCCUUACGCCGCGC	..(((.((......)).).))..........(.......((((((((((((......))))))))).))).......((((..(........)...)))).................)......
AE004439.1_147426	ACAUCUGUUAGAGAUAAAGGUGGGAAUGAUAGAGUAGAUCGUUUUCAGUCUGAGUCAUACUCCAAACAGGUAGAGUAGAAAGUAAAUUCGUUAGGGUAUUUAUGGGCUGAAGGUUUAAACUUCAGCCUUUUUU	..((((((......................................(((.((...)).)))....))))))..............((((....))))....(.(((((((((.......)))))))))...).
AE004439.1_841385	UAAUUGGCUCGAGCAGUUGCUAUUUUUUUAUUGUCGAACAAUAAUAGUAUUUGAACCCUCGAGAGUAAAUCCUUUUCUC	........(((((.(..(((((((..((...........)).)))))))..).....)))))(((......))).....

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bpRNA-new

bpRNA-new is a database of single molecule secondary structures annotated using bpRNA.

bpRNA-new is a dataset of RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability. It focuses on families distinct from those in bpRNA-1m, providing a robust benchmark for evaluating model performance on unseen RNA families.

Disclaimer

This is an UNOFFICIAL release of the bpRNA-new by Kengo Sato, et al.

The team releasing bpRNA-new did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.

Related Datasets

bpRNA-1m: A database of single molecule secondary structures annotated using bpRNA.
bpRNA-spot: A subset of bpRNA-1m that applies CD-HIT (CD-HIT-EST) to remove sequences with more than 80% sequence similarity from bpRNA-1m.
ArchiveII: A database of RNA secondary with the same families as RNAStrAlign, usually used for testing.

License

This dataset is licensed under the AGPL-3.0 License.

SPDX-License-Identifier: AGPL-3.0-or-later

Citation

@article{sato2021rna,
  author    = {Sato, Kengo and Akiyama, Manato and Sakakibara, Yasubumi},
  journal   = {Nature Communications},
  month     = feb,
  number    = 1,
  pages     = {941},
  publisher = {Springer Science and Business Media LLC},
  title     = {{RNA} secondary structure prediction using deep learning with thermodynamic integration},
  volume    = 12,
  year      = 2021
}

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