Personally, I am looking forward to see what happens with Peter and MJ in New York.  As to leadership, I think that Cap is going to take a page out of the Partisans and the Assymetrical warrior philosophy of the modern Special Tactics units.  Operate in small groups, hit and fade, sever supply lines and demoralize the people that turned to apocalypse, as well as force them to confront themselves to break conditioning.  It will work for some and not others, but Cap would love to have an Emma or Xavier in the teams so that when someone turns we can try and ascertain the veracity of their change.<br/><br/>Simply put, people like Magneto are leaders, they need to be given a long leash.  Cap hopes that Stark has or is gaining intel so that organized teams can have something to strike at.