 +	secondBestScorePair(0),
 +	probabilityOfAllCandidates(0.0),
 +	probabilityOfBestCandidate(0.0),
-+	probabilityOfSecondBestCandidate(0.0),
 +	popularSeedsSkipped(0),
 +	popularSeedsSkippedPair(0),
 +	minHits(0),

 struct SingleAlignmentResult {
 	AlignmentResult status;
 
@@ -54,6 +116,7 @@ struct SingleAlignmentResult {
     int             score;		// score of each end if matched
 
     int             mapq;		// mapping quality, encoded like a Phred score (but as an integer, not ASCII Phred + 33).

+	unsigned secondBestScorePair;
+	double probabilityOfAllCandidates;
+	double probabilityOfBestCandidate;
+	unsigned popularSeedsSkipped;
+	unsigned popularSeedsSkippedPair;
+	_int64 minHits;
