  
  
  #ifdef  _DEBUG
-@@ -764,6 +765,17 @@ Return Value:
+@@ -764,6 +765,16 @@ Return Value:
                  primaryResult->score = bestScore;
                  if (bestScore <= maxK) {
                      primaryResult->location = bestScoreGenomeLocation;

                     if (0 == addFrontClipping) {
diff -rupN -x Xcode -x .git tmp/snap/SNAPLib/SAM.cpp snap/SNAPLib/SAM.cpp
--- tmp/snap/SNAPLib/SAM.cpp	2015-07-28 15:15:02.000000000 -0400
+++ snap/SNAPLib/SAM.cpp	2015-08-05 11:25:54.000000000 -0400
@@ -1123,6 +1123,7 @@ SAMFormat::writeRead(
     Read * read,
     AlignmentResult result, 

         *spaceUsed = bamSize;
diff -rupN -x Xcode -x .git tmp/snap/SNAPLib/BaseAligner.cpp snap/SNAPLib/BaseAligner.cpp
--- tmp/snap/SNAPLib/BaseAligner.cpp	2015-07-28 15:15:02.000000000 -0400
+++ snap/SNAPLib/BaseAligner.cpp	2015-08-05 14:07:42.000000000 -0400
@@ -289,7 +289,7 @@ Return Value:
     primaryResult->score = UnusedScoreValue;
     primaryResult->status = NotFound;
