 +	secondBestScorePair(0),
 +	probabilityOfAllCandidates(0.0),
 +	probabilityOfBestCandidate(0.0),
-+	probabilityOfSecondBestCandidate(0.0),
 +	popularSeedsSkipped(0),
 +	popularSeedsSkippedPair(0),
 +	minHits(0),

 
 	bool fromAlignTogether;                     // Was this alignment created by aligning both reads together, rather than from some combination of single-end aligners?
 	bool alignedAsPair;                         // Were the reads aligned as a pair, or separately?
@@ -90,4 +155,4 @@ struct PairedAlignmentResult {
 
     static int compareByContigAndScore(const void *first, const void *second);      // qsort()-style compare routine
     static int compareByScore(const void *first, const void *second);               // qsort()-style compare routine

+			  unsigned _secondBestScorePair,
+			  double _probabilityOfAllCandidates,
+			  double _probabilityOfBestCandidate,
+			  unsigned _popularSeedsSkipped,
+			  unsigned _popularSeedsSkippedPair,
+			  _int64 _minHits,
