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jason136
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hmp_reference_genomes

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test · 29 rows

sequence stringlengths 619k 4.89M	organism stringlengths 21 52	taxonomy sequencelengths 6 8
"AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGCTTCTGAACTGGTTACCTGCCGTGAGTAAA(...TRUNCATED)	Escherichia coli SE11	["Bacteria","Pseudomonadati","Pseudomonadota","Gammaproteobacteria","Enterobacterales","Enterobacter(...TRUNCATED)
"ACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCAT(...TRUNCATED)	Staphylococcus aureus subsp. aureus USA300_TCH1516	[ "Bacteria", "Bacillati", "Bacillota", "Bacilli", "Bacillales", "Staphylococcaceae", "Staphylococcus" ]
"ATGAATGGTAGTTACGATTTCAATATTGTCAAAATTAATTGAAGTGATATTAAAGAACAAATTAAAAAGAGTATTAAAAATAGCGATATTTTTAATGAT(...TRUNCATED)	Candidatus Malacoplasma girerdii	[ "Bacteria", "Bacillati", "Mycoplasmatota", "Mycoplasmoidales", "Mycoplasmoidaceae", "Malacoplasma" ]
"ATGCCCAATTTAGAGGAACTTTGGGCTTACCTGAATGATAAATTCCGTGAAGAATTGACCCCGGTCGGTTACAGCACATGGATCCAGACAGCAAAACCC(...TRUNCATED)	Lacticaseibacillus paracasei subsp. paracasei 8700:2	["Bacteria","Bacillati","Bacillota","Bacilli","Lactobacillales","Lactobacillaceae","Lacticaseibacill(...TRUNCATED)
"CTTTTTCAAAATATTTTATTCTGACCGGTTTAATTTTTTTGTGGATAATCCCTCAAAAAAGTAAAAAATAGTTCAGGAGGGTAAGTTATGAACGCACAA(...TRUNCATED)	Filifactor alocis ATCC 35896	["Bacteria","Bacillati","Bacillota","Clostridia","Peptostreptococcales","Filifactoraceae","Filifacto(...TRUNCATED)
"TGGAAAACTATTGAAAAAAATGCTAAATTAGTACTAGTTATTCACTTTTTAATGAAGGAGGAGGCCTTATATGGTATCCCTCGATGCTTTATGGAATGA(...TRUNCATED)	Enterococcus faecium DO	[ "Bacteria", "Bacillati", "Bacillota", "Bacilli", "Lactobacillales", "Enterococcaceae", "Enterococcus" ]
"CCATGTCTACTAGTTTATTGACTACTCATAAAAAGAATGCTCATCTTACTAAAGAAGAACGTGTGATGATTGCGACTTTAAAGTCGCAAGGACTTTCCA(...TRUNCATED)	Limosilactobacillus reuteri SD2112	["Bacteria","Bacillati","Bacillota","Bacilli","Lactobacillales","Lactobacillaceae","Limosilactobacil(...TRUNCATED)
"GAATATCCCACTTATTTTTTATGCAAATCAGAGCATGCTGAACTAATTATTGTGCACAATCCTTCCATAATTTTGTCTACTGGAGAAGCTGCGCGCCAA(...TRUNCATED)	Gardnerella vaginalis 409-05	["Bacteria","Bacillati","Actinomycetota","Actinomycetes","Bifidobacteriales","Bifidobacteriaceae","G(...TRUNCATED)
"ACGTTGTCGGAGTCGCTATCGGCAAACTGATGACCCTGCGCCGCCAGACCATCAAGTGACACCCATGAAACCACATTTGTGTAGTCATTTGACCCACTT(...TRUNCATED)	Cutibacterium acnes SK137	["Bacteria","Bacillati","Actinomycetota","Actinomycetes","Propionibacteriales","Propionibacteriaceae(...TRUNCATED)
"GAAAGCTTGTGATACGCGTGAAGCAAAACAACACGCGTATCACACGCTCAACGCAAGCCTTTTAACTTAGTGACGCATCTTGCGAACAGCAGCACCCAT(...TRUNCATED)	Gardnerella vaginalis ATCC 14019	["Bacteria","Bacillati","Actinomycetota","Actinomycetes","Bifidobacteriales","Bifidobacteriaceae","G(...TRUNCATED)

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