Error code: ConfigNamesError Exception: RuntimeError Message: Dataset scripts are no longer supported, but found physionet-deid-i2b2-2014.py Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/job_runners/dataset/config_names.py", line 66, in compute_config_names_response config_names = get_dataset_config_names( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/inspect.py", line 161, in get_dataset_config_names dataset_module = dataset_module_factory( File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 1031, in dataset_module_factory raise e1 from None File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/load.py", line 989, in dataset_module_factory raise RuntimeError(f"Dataset scripts are no longer supported, but found {filename}") RuntimeError: Dataset scripts are no longer supported, but found physionet-deid-i2b2-2014.py

Labels for Physionet Gold Corpus following the I2B2-2014 de-identification challenge guidelines

The data consists of labels for the Physionet Gold Corpus dataset: https://physionet.org/content/deidentifiedmedicaltext/1.0/.

Annotation follows the guidelines described in section 4 of: Amber Stubbs OU. Annotating longitudinal clinical narratives for de-identification: the 2014 i2b2/UTHealth Corpus. J Biomed Inform. 2015;58(Suppl):S20, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4978170/.

This labeling was used in the paper "Customization Scenarios for De-identification of Clinical Notes" in order to generate results for models trained on I2B2-2014 dataset, and evaluated on the Physionet Gold Corpus dataset.

Contact:

For questions or comments, please contact corresponding authors appearing in the paper.

Data:

Data includes:

I2B2-2014-Relabeled-PhysionetGoldCorpus.csv Comma Separated Values with the following columns: a. record_id - string of the form "||||||||" corresponding to the id given in the original Physionet Gold Corpus dataset. For example, "22||||35||||" corresponds to START_OF_RECORD=22||||35|||| start marker in the original Physionet corpus. b. begin - int, specifying the relative offset of the span relative to START_OF_RECORD. c. length - int, specifying the length of span. d. type - enum, with one of the following values: NAME, AGE, ORGANIZATION, ID, DATE, CITY, STATE, COUNTRY, LOCATION, HOSPITAL, PHONE, PROFESSION.