Hi List,

Is there any way to get RNAfold predicted secondary structure in text format? It provides a PDF and PNG file but is it possible to get something like structures in this figure: [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3787264/figure/F3/][1]

Bade


  [1]: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3787264/figure/F3/
I had a Perl Module to output ASCII text of **miRNA precursor secondary structure**.

RNA::HairpinFigure - Draw hairpin-like text figure from RNA sequence and its secondary structure in dot-bracket notation.
http://search.cpan.org/dist/RNA-HairpinFigure/lib/RNA/HairpinFigure.pm#synopsis

       >hsa-mir-92a-1 MI0000093 Homo sapiens miR-92a-1 stem-loop
        CUUUCUACACAGGUUGGGAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGG
        ..(((...((((((((((((.(((.(((((((((((......)))))))))))))).)))))))))))).))).....
        ---CU   UAC            C   U           UU 
             UUC   ACAGGUUGGGAU GGU GCAAUGCUGUG  U
             |||   |||||||||||| ||| |||||||||||   
             GAG   UGUCCGGCCCUG UCA CGUUAUGGUAU  G
        GGUUU   --U            U   -           GU 


