<p>Can you give me examples for exact algorithms for motif discovery?</p>

<p>Hi,</p>
<p>These links should help you understand motif discovery and get examples of the algorithms.</p>
<ol>
<li>This link on Nature explain: <a href="http://www.nature.com/nbt/journal/v24/n8/full/nbt0806-959.html">how does DNA sequence motif discovery work?</a></li>
<li>Paper on BMC bioinformatics: <a href="http://www.biomedcentral.com/1471-2105/8/S7/S21">survey of DNA motif finding algorithms</a></li>
<li>This paper discusses some <a href="http://nar.oxfordjournals.org/content/33/15/4899.full">limitations and potentials of motif discovery algorithms (2005)</a></li>
</ol>
<p>I hope this helps.</p>