AFIK, Short sequencing and short pairwise sequencing generated by next-generation-sequencing is common now-a-days and there exists several alignment tools for them.

But I want to ask about long pairwise sequencing. There exists some alignment tools for long sequences like [rHAT][1]. That means there is at least one tool which generates long reads.

Now, I am asking that is there any tool which generates **Long Pairwise Reads**? if yes, then is there exist any aligner or mapper for that? Give me some idea about it.

Thanks in advance.


  [1]: https://github.com/derekguan/rHAT
See this nice graphic for various sequencing technologies currently available:
![enter image description here][1]

from: https://flxlexblog.wordpress.com/2016/07/08/developments-in-high-throughput-sequencing-july-2016-edition/

None of the long read technologies are paired-end. However, with long reads, the paired-end option becomes a lot less useful.

  [1]: https://flxlexblog.files.wordpress.com/2016/07/developments_in_high_throughput_sequencing.jpg