Hi guys, do you know based on which database does prokka assign EC numbers to found proteins? KEGG or NCBI database or an internal db?
thanks
Prokka assigns all annotations by copying fasta headers from its internal database, or from HMM descriptions.

The meaning of EC numbers is explained at [**ExPASy**][1], specifically in [**this file**][2]. Prokka has all the files used for annotations in `db/genus` and `db/kingdom` directories.


  [1]: https://enzyme.expasy.org/
  [2]: ftp://ftp.expasy.org/databases/enzyme/enzclass.txt