Hi friends,

I am trying to download ht-seq file form GDC portal but it gives me one file for each patients. Can you please let me know how to download one file including all patients together for all 60000 genes?

Is there any R code for this?

Thank you
Whatever method you tried, internally it stills need to download all files, before the RNA API is in production.

There are some R tools doing that, or you can use "GDC RNA tool" listed here https://gdc.cancer.gov/access-data/gdc-community-tools for aggregation
