I am trying to do the example in [this link][1].

 [1]: http://wgs-assembler.sourceforge.net/wiki/index.php/PBcR

the lambda example, I use this command:

```
wgs-8.2alpha/Linux-amd64/bin/PBcR -length 500 \
  -partitions 200 \
  -l lambdaIll \
  -s pacbio.spec \
  -fastq pacbio.filtered_subreads.fastq \
  genomeSize=50000 \
  illumina.frg
```

but it gives me this error:

```
Running with 40.01948X (for genome size 50000) of lambdaIll sequences (2000974 bp).
Correcting with 50X sequences (2500000 bp).
AMOS or PBDAGCON is required to call consensus and neither was available. Please add either SMRTportal or AMOS to your path and try again
```

I already have *pbdagcon* in my path.

Any Idea

Thanks in advance

**Update**: after installing AMOS It worked
Right now I am installing AMOS and its dependency and I will see what will happens and your suggestion is to use `-pbCNS` flag ?!

**Update**: After installing AMOS It worked