Dear all,

I am trying to generate exactly the same results in Limma for my result table as I did in DESEQ2 (Differential Expression Analysis).

With the toptable function I am not getting lfcSE and basemean.

Can anyone help me how to extract this information via Limma?

I do get logFC, AveExpr, t, P-Value, adj.Pvalue and B in Limma. 

Thank you,
Bine
It would be superfluous to include a SE column in the limma output because it is not needed and because it is immediately computable from the other columns.