<p>I have few motifs whose location on a given DNA sequence has been identified using MATCH (from TRANSFAC). MATCH provides the location of these matrices in a numerical way as motif 1  236 (+) (for an example - motif 1 is present at location 236). I want to get a graphical output by feeding the length of DNA sequence and the the position of matrices so that its easy for presentation and comparing two different sequences with almost similar motifs</p>

<p>Thanks in advance for any suggestions</p>

<p>Have you tried the features and annotations options in <a href="http://www.jalview.org">Jalview</a></p>
