Hi,
I have an RNAseq data from TCR  alpha and bed chain single cell sequencing which I am trying to analyze.  I looked at the post https://www.biostars.org/p/148371/ and also read the Mark Davis paper and the protocol, which I thought would be appropriate to follow.  But I cannot either find the dataset from the Mark Davis paper not the tool they used (vdjfasta).  I was writing to ask what is the latest tool that would be appropriate for assembling the reads and getting a summary the TCR clones from my dataset.
Thanks,
- Pankaj
One of our post-docs has had nice results from [mixcr](https://github.com/milaboratory/mixcr). This was with an amplicon sequencing dataset, so I can't say how similar it is to your setup.