I've got a list of SV calls, including breakpoints, and can easily enough winnow them down to those that are candidate gene fusions (intersect gene body or intron, same direction, strand, etc).

Now I'd like to know whether they're predicted to give in-frame or out-of-frame fusions. So far, I'm unable to find any annotation tool that can do this in a straightforward manner. Visualization would also be nice, but isn't necessary.

Any suggestions?
I had good results using [PRADA][1], (suggested by Roel Verhaak on Twitter). Specifically, the prada-frame command takes easy input (gene name, breakpoint location) that I already had and spits out a list of consequences in every transcript that matches.

 [1]: http://bioinformatics.mdanderson.org/main/PRADA:Overview