Hi Biostars,

I am looking for a tool for finding CpG islands in a draft genome-assembly. I see some tools which are web-based with input limit. I also see some tools that are specialised for mammalian genome promoters. The organism is non-mammalian. Some tools use epigenetic marks. I don't have DNA methylation data.

Is there a tool or a script that can use large `FASTA` files and find CpG islands?
Hi Satya,

Have you already tried [cpgplot][1], available [here][2]?


  [1]: http://emboss.open-bio.org/rel/rel6/apps/cpgplot.html
  [2]: ftp://emboss.open-bio.org/pub/EMBOSS/emboss-latest.tar.gz