Hi All,

I have some PacBio data in bam format obtained from the Sequel platform.

I know that the PacBio sequencing is able to captures the methylation information, but I don't know how to "obtain" these information.

Is there a way to know which bases in the bam files are methylated using samtools?

Or is there a compleatly different way?

Thank You
I have complied some of the steps to do this in a previous post. I am not an expert on this by any means but most of PacBio's official documentation for this type of pipeline is outlined in the post linked below:

https://www.biostars.org/p/302290/#302647
