Hello,

due to "reasons", I have a somewhat important batch effect in a cohort, that is impacting quite negatively my splicing analysis. Is there any way that this could be "dealt with" in KissDE (or with another way ?), like it can be done with DESeq2 (modeling the effect by including it into the design formula : ~ batch + condition) ?

By the way, the new --type1-only parameter in KisSplice 2.6.2 is quite a nice addition, thanks!

Best,

David.
Hello,

I do not think this is yet possible with kissDE, even though it could be a quick, easy and nice addition to the package! Maybe in the near future...?

Oh, you noticed that option? Cool! Indeed, it can save a lot of time for people only interested in AS events (even though some AS events could be found in the type 4...).

Have you noticed the Shiny Interface that comes with the lastest version of kissDE? We hope that it can help users to quickly navigate and identify interesting entries in kissDE results...

Best,
Audric