Hi everyone,

I'm trying to run Mutect2 for WES cancer data. 

However, since their Resource bundle only supports h19 seems I cannot proceed (I want to compare it with Strelka2 results).

I've been looking for some hg38 interval_list file and I found: 
`hg38_v0_HybSelOligos_whole_exome_illumina_coding_v1_whole_exome_illumina_coding_v1.Homo_sapiens_assembly38.targets.interval_list`

However, when I run the GenomicsDBImport I get the error (no matter if I use my own hg38 reference and .dict or the ones from GATK Resource Bundle):

    A USER ERROR has occurred: Badly formed genome unclippedLoc: Contig chr1 given as location, but this contig isn't present in the Fasta sequence dictionary

So, my questions are:

1. Does anyone know if there is any release date for this hg38 based exome interval file? 
2. Or the file I put is ok and the error is coming from somewhere else?
For the ones interested:

This error was a product of incorrect indexing of Fasta reference.

I used the hg38 reference available on the NCBI web.

However, all the chromosome regions are listed as `NC_10000.0` codes instead of 1, 2, 3 or chr1 chr2 and chr3.

I had to change it to another reference (I downloaded both .FA and .FAI from GATK Resource Bundle but it seems to work fine with hg38 from Ensembl too).