<p>Hi all! I wasnt successful trying to find files with annotated transposable elements on chromosomes from Arabidopsis. I am also interested in their specific locations on chromosomes. Any help will be appreciated :)</p>

Your best bet for Arabidopsis genome annotation is <a href="http://www.arabidopsis.org/">TAIR</a>, and the file you are looking for is [this one (FTP link)](ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR10_genome_release/TAIR10_transposable_elements/TAIR10_Transposable_Elements.txt).

These data are based on the work of Buisine, Quesneville and Colot (Genomics 2008), for more information see: <a href="http://urgi.versailles.inra.fr/Data/Transposable-elements/Arabidopsis">http://urgi.versailles.inra.fr/Data/Transposable-elements/Arabidopsis</a>