<p>I have few motifs whose location on a given DNA sequence has been identified using MATCH (from TRANSFAC). MATCH provides the location of these matrices in a numerical way as motif 1  236 (+) (for an example - motif 1 is present at location 236). I want to get a graphical output by feeding the length of DNA sequence and the the position of matrices so that its easy for presentation and comparing two different sequences with almost similar motifs</p>

<p>Thanks in advance for any suggestions</p>

<p>You might want to look at berrylogo - it will be a more accurate means of visually comparing two motifs than a SeqLogo because a shift in nucleotide rank won't appear radically different</p>

<p><a href="https://github.com/leipzig/berrylogo">https://github.com/leipzig/berrylogo</a></p>
