Hello,

Can anyone suggest a simple R package to perform GO term analysis. Specially I am looking for a package that can produces publication quality figures and heatmaps regarding GO term results.

Thanks in advance

There are quite a few packages out there, and there was a thread on this already: https://www.biostars.org/p/222081/

See also my answer to this thread on GO term reliability: https://www.biostars.org/p/272473/#272486

One that is not mentioned in these threads is <a href="https://www.bioconductor.org/packages/devel/bioc/vignettes/topGO/inst/doc/topGO.pdf">topGO</a>

Another one with heatmaps is <a href="https://bioconductor.org/packages/devel/bioc/vignettes/GOexpress/inst/doc/GOexpress-UsersGuide.pdf">GOexpress</a>

