Hi,

I want to extract reads from bam file using Samtools view from multiple regions.The regions I have are present in the VCF file,which I want to use.So there are not a small number of regions.Is there any way to do this in Samtools view.

for e.g inputting a file in some format in Samtools view?

Thanks

<p>Hello Ron!</p>

<p>Questions similar to yours can already be found at:</p>

<ul>

	<li> <a href="/p/49306/">Samtools And Region List</a></li>

</ul>

<p>
    We have closed your question to allow us to keep similar content in the same thread.
</p>

<p>
    If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
</p>

<p>Cheers!</p>


    PS: duplicate of &quot;Samtools And Region List&quot;



