Hi Everyone,

I am trying to replicate the results of the following paper:
https://genome.cshlp.org/content/28/3/396

The data is long reads from Pacbio RS II and is available in SRA in the following location :
https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SAMN06328616&o=acc_s%3Aa

I am getting an error "ERROR, could not read quality metrics for FASTQ Sequence" when I try to use the program bax2bam to convert the legacy pacbio files to pacbio bam files. 

Any suggestions how to convert the files from SRA to pacbio bam files to be used with the IsoSeq3 pipeline?

Thanks
As [already said][1] by [foeckingmf][2] it seems to be a bug.
I had the same problem and solved it downgrading bax2bam from version 0.0.11 to 0.0.9

    conda install -c bioconda bax2bam=0.0.9 


  [1]: https://www.biostars.org/p/492792/#9463249
  [2]: https://www.biostars.org/u/c0631eff/