Title says it all - just looking to set a few of these up for various reasons.

For instance, I may teach a bioinformatics course coming up. I would love to have them all download their data from GEO or somewhere, and there pipeline in a docker container, and then have them independently verify (or disconfirm) a published report.

Thus, if there is a vignette that does the leg-work of identifying the experiment etc. already written that would be best, but honestly just dockerized pipelines (of good quality) would be close - I could make the vignette from there.

Thanks v much!
You're probably looking for something like https://nf-co.re/ for full, high-quality pipelines.

They are still not trivial to run however.
