The Genbank ftp site (ftp://ftp.ncbi.nih.gov/genomes/) used to contain a folder called Bacteria, with all the bacterial genomes, but it seems to have disappeared. Does anyone know where these might have been moved to? I can't find anything about it on the NCBI site, and I need to access some gff files ASAP.
Assembled genome sequence and annotation data for GenBank genome assemblies is now (from 02-DEC-2015) available under: ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/