I have few VCF Files which contains Chromosome number, position, Variation allele (Ref and Alt). 

How can I generate the Gene name, its Refseq and listing all of its transcripts?
1.	Any tool which gives these kind of results when upload VCF data?
2.	Is there any module in Biopython or Bioconductor or script for this?
3.	Is there any lists that links gene name to Refseq and transcript information?

Thank you for the valuable suggestions




You need the [variant effect predictor][1], does exactly what you need.


  [1]: http://www.ensembl.org/info/docs/tools/vep/index.html