Hello,

For more than a month I am trying many tools for finding DE miRNAs in fungi but error, error, error

online tools don't support fungi and local tools were mostly written in perl needed mirdeep2 algorithms

believe my failure is not because of my laziness, I tried whatever I could

although being too rude with a great expectation, please someone help me to install **mirdeep** via TeamViewer or whatever 

I asked institute admin, he tried his best but my problem was not solved

thank you in advance 


Hi Angel,
I dont know if there is any specific reason that you are using miRDeep2. But miRDeep* claims that it is better (in predicting novel miRNAs) than miRDeep2 (http://www.australianprostatecentre.org/research/software/mirdeep-star) and has GUI. You can try this.
Additionally, there is a web-server oasis2.0 (https://oasis.dzne.de/index.php) that can be used for miRNA identification, DE study and Target prediction. Though your organism of interest is not listed there, there is an option "All Genomes of miRBase v21" under Reference Genome drop-down. I am not sure, if you can use this option.