Hi.

If you want to remove reads mapped on a certain chr, how would you do that?

I know 'samtools' can extract reads on a chr. Extraction of each chr and combining chr data I want would solve the problem, but I have multiple bam files to run it.

So, if anyone of you know how to REMOVE a single chr (e.g. chr1 only), please tell me.

Thank you!
See this post: https://www.biostars.org/p/128967/