Hi friends,

I am trying to download ht-seq file form GDC portal but it gives me one file for each patients. Can you please let me know how to download one file including all patients together for all 60000 genes?

Is there any R code for this?

Thank you
You can use:

[xenabrowser][1]

or 

r package [TCGAbiolinks][2]


  [1]: https://xenabrowser.net/datapages/
  [2]: https://bioconductor.org/packages/release/bioc/html/TCGAbiolinks.html