<p>Hi all</p>

<p>I'd like to know if anyone has or might know where to get a list of SNPs in high LD for the last human genome build (GRCh37). I'm currently working with the Brazilian population. I'm trying to do PCA for population structure analysis and, therefore, need to remove high LD regions from my dataset to get a low biased PC axes. </p>

<p>Thanks a lot in advance for the attention!</p>

<p>Best regards,
Pedro.
PS: Just --indep-pairwise option in PLINK won't solve my problem</p>

<p>The LD data for <strong>hapmap</strong> / <strong>hg18</strong> are available here: <a href='http://hapmap.ncbi.nlm.nih.gov/downloads/ld_data/?N=D'>http://hapmap.ncbi.nlm.nih.gov/downloads/ld_data/?N=D</a></p>

<p>you could run <strong>liftOver</strong> to map those positions to hg19.</p>
