Hi everyone!

Sorry for this noob question, but I just wanted to ask, what is the best practice in the field for publishing RNA sequencing data analysis scripts? Does it usually happen before the publication, or after? Currently I kept the repo as private and the paper is not published yet.
I would strongly recommend publishing them before the paper. That way, you can get your code peer reviewed before you submit your article. That may improve your code. You may have to arrange reviewers yourself for this (maybe an idea for a new BioStars section?).