Hi All,

I went through [this paper on promoter atlas in FANTOM5][1], my question is that do they have cell wise CAGE dataset or is it global , as I cannot see the cell wise CAGE expression on their website.

Thanks in advance.

 [1]: http://www.nature.com/nature/journal/v507/n7493/full/nature13182.html#the-fantom5-promoter-atlas
Hi:

Are you asking if they have cell-line/cell-type specific data to view? The answer is yes. A link to their ZENBU genome browser can be found <a href="http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=ONHzqgf2E5Xtmnpsh2gURB">here</a>; you can add/remove certain datasets as tracks. While ZENBU works fine, for my use cases I prefer to use <a href="http://www.broadinstitute.org/igv/">IGV</a> for various reasons, including its flexibility. For example, you can load datasets on custom servers (ie iPlant Atmosphere) and it has integration with bedtools as well.

Hope this helps,

Taylor