<p>Hi,</p>

<p>I finished mapping and variant calling on these for solid data. Now I&#39;m looking to identify large rearrangements and transposable elements. Can anyone tell me any good tools for these? One tool I have come across now is <a href="https://code.google.com/p/nfuse/">nFuse</a>. I wanted to know what the general pipeline for this is.</p>

<p>And I would like to view such arrangements as <code>Circos</code> plots.</p>

<p>Thanks for the help.</p>

<p>Hello Jordan.</p>

<p>I think <a href='http://svdetect.sourceforge.net'>SVDetect</a> can help you.</p>
