<p>Dear all,</p>

<p>I have checked many post in biostar and other blogs to find orthologous and paralogous gene identification across/within the species. Most of them are suggesting for Best Reciprocal Blast Method(BBRM). But i have 2 leaf and 2 rhizome transcript samples. I have to find out orthologous and paralogous genes between these set. Shall i use BRBM method or are there any other better way to do it.</p>

<p>Please suggest any tools.</p>

<p>Thanks all</p>

<p>Thanks for the suggestion.</p>

<p>If i am not mistaken, you are suggesting BRBM (Best Reciprocal Blast method) to use. If so i will find orthologous genes between samples. Could you please suggest any way to find paralogous genes as well</p>
