Hello,
I'd like to filter for sites that have a DP>5 in my normal sample and DP>10 in the tumor. My vcf has two samples columns, TUMOR NORMAL. How do I do that with a bcftools expression? I see in the documentation how to apply the filter for one or all samples in a vcf row but I couldn't find a way to specify the sample name.
Thanks a lot.
Actually bcftools supports this also. This worked for me:

`bcftools filter -s MY_FILTER -m + -e "FMT/DP[0] <= 5 || FMT/DP[1] <= 10" my.vcf`

which appends MY_FILTER based on the exclusion criteria