<p>Dear lazyweb,</p>

<p>do you know any tool/script to visualize the different outputs of GATK <a href='http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_annotator_DepthOfCoverage.html'>DepthOfCoverage</a> ?</p>

<p>P.</p>

<p>I wrote these scripts some time ago:</p>

<p><a href="https://github.com/johandahlberg/Scripts/blob/master/plottingLociVsCoverage.R">https://github.com/johandahlberg/Scripts/blob/master/plottingLociVsCoverage.R</a></p>

<p><a href="https://github.com/johandahlberg/Scripts/blob/master/plottingCumulativeCoverage.R">https://github.com/johandahlberg/Scripts/blob/master/plottingCumulativeCoverage.R</a></p>

<p>R really isn't my strong suite, but at least its something, and they served my purpose at the time. I would be happy to accept any pull requests to improve on them, though.</p>
