Good morning, 

I want to analyse public SHort Read archive from an RNA-seq experiment.
I am trying to quantify them using sailfish. it is needed to provide the library type as an argument : -l "<libtype>"
But I only that my data are paired-end ( dataset GSE89063)
How can I know what to write for this argument ?
Thanks a lot

Have a good day

Hi,
      You can also check by performing some steps to know the strand specificity, please check the link below.

http://onetipperday.sterding.com/2012/07/how-to-tell-which-library-type-to-use.html

Hope it works with you. 