<p>I would like to verify if all the protein in specific pathways (e.g. secretion systems, two component regulatory system) are present in a genome.</p>

<p>Is there a way to do this automatically iterating the search for many genomes?</p>

https://gist.github.com/RamRS/d772a4e8e562a45f0207e3ea1d18472e

Cleaned up the post and moved to a Gist by https://www.biostars.org/u/8494/ on 22-Apr-2022.