Is there a way to generate a heatmap of a complex of transcription factors (in more detail, I am trying to generate a heatmap of the 7SK snRNP which is composed of Hexim, Larp7, and Cdk9) at the TSS. I can easily generate individual heatmaps for each of the separate TF's themselves using ngsplot or deepTools, but I was wondering if there was a way to combine all three into a single heatmap?

I also have some experience with R and Bioconductor so any packages can also be submitted as answers.

Thanks in advance
<p>Just use the &quot;release-1.6&quot; branch of deepTools, you can then include multiple samples in a heatmap (or profile plot).</p>
