<p>Hello,</p>

<p>Is it possible to use vcftools weir-fst-pop on haploid genomes? I do not seem to be able to find any option to specify the ploidy of my samples.</p>

<p>Thank you in advance.</p>

<p>Fst involves measuring expected heterozygosity. Given that, it is impossible to calculate Fst for haploid organisms.</p>
