Hi

I've been working on the gene set enrichment analysis by ClusterProfiler, and I'm able to generate the enriched terms table by the `enricher` function:

    CRE_MapMan_GSEA <-enricher(DEG_cht7_6_up_LocusID$Gene_ID,
                               TERM2GENE=TERM2GENE, 
                               TERM2NAME = TERM2NAME,
                               pvalueCutoff = 0.05)
Result: 
  

      ID	           Description	                            pvalue
        
        28.1	       DNA.synthesis/chromatin structure	    6.96E-19
        31.6.1.1	   cell.motility.eukaryotes.basal bodies	4.77E-08
        28.2	       cell.motility.eukaryotes.basal bodies	1.63E-06
        24	           DNA.repair	                            4.38E-06
        31.2	       Biodegradation of Xenobiotics	        1.32E-05
        27.3.44	       cell.division	                        1.90E-03
        31.1	       RNA.regulation of transcription.         2.24E-03
                       Chromatin Remodeling Factors	           

However, there're only 7 terms displayed. Does that mean the rest of them are not significant enough? Is there any way I can see the p-values of more terms?  I've tried to play with the `pvalueCutoff` parameter, but the number of the displayed term is still the same.

Thanks!

Try to use different `qvalueCutoff` value as cut off.