#=GENOME_DIFF	1.0
#=TITLE	Ara-2_40000gen_11035
#=AUTHOR	Deatherage, Daniel
#=TIME	40000
#=POPULATION	Ara-2
#=TREATMENT	LTEE
#=CLONE	A
#=MUTATOR_STATUS	point-mutator
#=REFSEQ	https://raw.githubusercontent.com/barricklab/LTEE/7da91974eafac0c5a8f903ae57275795d4395af2/reference/REL606.gbk
#=READSEQ	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR153/007/SRR1536187/SRR1536187.fastq.gz
DEL	1	.	REL606	309	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	2	.	REL606	2098	G
SNP	3	.	REL606	2942	G
SNP	4	.	REL606	14866	T
SNP	5	.	REL606	16990	G
INS	6	.	REL606	18157	G	insert_position=1
SNP	7	.	REL606	27422	T
SNP	8	.	REL606	31719	G
SNP	9	.	REL606	38095	A
DEL	10	.	REL606	38191	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	11	.	REL606	43770	A
SNP	12	.	REL606	48723	T
SNP	13	.	REL606	53052	A
SNP	14	.	REL606	55948	G
SNP	15	.	REL606	66804	C
SNP	16	.	REL606	71161	T
SNP	17	.	REL606	83144	T
SNP	18	.	REL606	92773	G
SNP	19	.	REL606	94365	T
SNP	20	.	REL606	97899	T
SNP	21	.	REL606	100745	G
SNP	22	.	REL606	108091	G
SNP	23	.	REL606	108901	G
SNP	24	.	REL606	111276	T
SNP	25	.	REL606	114113	A
SNP	26	.	REL606	114648	T
SNP	27	.	REL606	115677	G
SNP	28	.	REL606	118651	G
SNP	29	.	REL606	121476	T
SNP	30	.	REL606	132289	G
DEL	31	.	REL606	133135	3	repeat_length=3	repeat_new_copies=3	repeat_ref_copies=4	repeat_seq=ATG
SNP	32	.	REL606	135080	G
SNP	33	.	REL606	140051	T
SNP	34	.	REL606	142858	G
INS	35	.	REL606	145618	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	36	.	REL606	148265	A
SNP	37	.	REL606	165290	T
SNP	38	.	REL606	167344	A
SNP	39	.	REL606	167720	T
SNP	40	.	REL606	168033	T
SNP	41	.	REL606	168645	G
DEL	42	.	REL606	169983	3	repeat_length=3	repeat_new_copies=2	repeat_ref_copies=3	repeat_seq=GCA
SNP	43	.	REL606	178048	A
SNP	44	.	REL606	178541	C
SNP	45	.	REL606	179806	T
SNP	46	.	REL606	196671	T
SNP	47	.	REL606	196871	G
SNP	48	.	REL606	201659	G
SNP	49	.	REL606	205872	T
SNP	50	.	REL606	215779	T
SNP	51	.	REL606	216867	G
SNP	52	.	REL606	226115	G
DEL	53	.	REL606	242203	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=G
INS	54	.	REL606	242203	G	insert_position=1	phylogeny_id=1
SNP	55	.	REL606	251861	C
SNP	56	.	REL606	255562	T
SNP	57	.	REL606	257276	G
SNP	58	.	REL606	258173	A
SNP	59	.	REL606	259915	A
SNP	60	.	REL606	265829	G
SNP	61	.	REL606	266234	G
SNP	62	.	REL606	266410	T
SNP	63	.	REL606	267129	A
SNP	64	.	REL606	269344	G
SNP	65	.	REL606	271710	A
DEL	66	.	REL606	278236	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=C
INS	67	.	REL606	278236	C	insert_position=1
DEL	68	.	REL606	278454	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
INS	69	.	REL606	281660	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	70	.	REL606	288366	T
DEL	71	.	REL606	294213	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
INS	72	.	REL606	294213	G	insert_position=1
SNP	73	.	REL606	294649	G
SNP	74	.	REL606	295063	T
SNP	75	.	REL606	296660	T
SNP	76	.	REL606	299310	T
SNP	77	.	REL606	304139	T
SNP	78	.	REL606	307908	G
SNP	79	.	REL606	308207	A
SNP	80	.	REL606	309034	C
SNP	81	.	REL606	314107	T
SNP	82	.	REL606	324643	C
SNP	83	.	REL606	327590	A
SNP	84	.	REL606	328498	A
SNP	85	.	REL606	328607	G
SNP	86	.	REL606	332236	A
SNP	87	.	REL606	334619	G
SNP	88	.	REL606	339678	C
SNP	89	.	REL606	340303	T
DEL	90	.	REL606	340408	2	repeat_length=2	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=GC
SNP	91	.	REL606	343430	G
SNP	92	.	REL606	349027	T
INS	93	.	REL606	352278	G	insert_position=1
DEL	94	.	REL606	352377	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=G
INS	95	.	REL606	354039	T	adjacent=IS1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	96	.	REL606	357570	C
INS	97	.	REL606	357582	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	98	.	REL606	359744	C
SNP	99	.	REL606	359945	T
SNP	100	.	REL606	370600	T
SNP	101	.	REL606	372732	T
SNP	102	.	REL606	372774	T
SNP	103	.	REL606	374538	G
INS	104	.	REL606	374789	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	105	.	REL606	375879	T
INS	106	.	REL606	379321	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	107	.	REL606	387000	G
SNP	108	.	REL606	393364	A
SNP	109	.	REL606	393900	T
SNP	110	.	REL606	403889	A
SNP	111	.	REL606	422601	G
SNP	112	.	REL606	423643	G
SNP	113	.	REL606	425401	A
SNP	114	.	REL606	427311	T
SNP	115	.	REL606	436288	A
SNP	116	.	REL606	437302	C
SNP	117	.	REL606	437346	T
SNP	118	.	REL606	438705	G
SNP	119	.	REL606	446716	G
SNP	120	.	REL606	449722	G
SNP	121	.	REL606	450296	G
SNP	122	.	REL606	452672	T
INS	123	.	REL606	456404	CCC	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=6	repeat_seq=C
SNP	124	.	REL606	458996	T
SNP	125	.	REL606	459186	T
SNP	126	.	REL606	465297	T
SNP	127	.	REL606	470193	G
SNP	128	.	REL606	474561	G
SNP	129	.	REL606	484203	C
SNP	130	.	REL606	486377	T
SNP	131	.	REL606	486675	C
SNP	132	.	REL606	487591	G
SNP	133	.	REL606	491519	G
DEL	134	.	REL606	495382	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
INS	135	.	REL606	499245	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
INS	136	.	REL606	499245	G	insert_position=2
INS	137	.	REL606	501052	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	138	.	REL606	503150	A
SNP	139	.	REL606	506968	A
SNP	140	.	REL606	521606	C
SNP	141	.	REL606	527218	T
SNP	142	.	REL606	539609	T
SNP	143	.	REL606	541046	C
SNP	144	.	REL606	542933	G
DEL	145	.	REL606	550485	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	146	.	REL606	552509	G
SNP	147	.	REL606	556883	A
SNP	148	.	REL606	556964	A
SNP	149	.	REL606	564674	A
SNP	150	.	REL606	574046	A
SNP	151	.	REL606	574371	T
SNP	152	.	REL606	576973	T
SNP	153	.	REL606	579434	G
DEL	154	.	REL606	590323	29562	between=IS1	mediated=IS150
DEL	155	.	REL606	601085	1	before=154	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	156	.	REL606	601830	G	before=154
SNP	157	.	REL606	604532	T	before=154
SNP	158	.	REL606	613623	A	before=154
SNP	159	.	REL606	620506	A	adjacent=IS186	within=160:1
INS	160	.	REL606	620506	G	adjacent=IS186	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
INS	161	.	REL606	620837	G	adjacent=IS186	insert_position=1
INS	162	.	REL606	620837	GG	adjacent=IS186	insert_position=2
SNP	163	.	REL606	624692	G
SNP	164	.	REL606	626325	G
SNP	165	.	REL606	635248	A
DEL	166	.	REL606	640131	1	phylogeny_id=2	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	167	.	REL606	649522	T
SNP	168	.	REL606	650661	C
SNP	169	.	REL606	651543	A
SNP	170	.	REL606	651674	G
SNP	171	.	REL606	653103	G
SNP	172	.	REL606	653991	G
SNP	173	.	REL606	674301	T
SNP	174	.	REL606	676536	C
SNP	175	.	REL606	681099	T
SNP	176	.	REL606	681185	A
SUB	177	.	REL606	703928	2	T
SNP	178	.	REL606	726583	C
DEL	179	.	REL606	749483	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=A
SNP	180	.	REL606	762892	G
SNP	181	.	REL606	785279	G
SNP	182	.	REL606	788893	T
INS	183	.	REL606	791155	C	insert_position=1
INS	184	.	REL606	791155	C	insert_position=2
INS	185	.	REL606	791155	C	insert_position=3
SNP	186	.	REL606	791582	T
DEL	187	.	REL606	794720	1	phylogeny_id=1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
INS	188	.	REL606	794720	G	insert_position=1
SNP	189	.	REL606	804885	G
DEL	190	.	REL606	805715	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
SNP	191	.	REL606	806804	G
INS	192	.	REL606	817179	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	193	.	REL606	819840	A
SNP	194	.	REL606	821486	A
INS	195	.	REL606	831848	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
SNP	196	.	REL606	834861	G
SNP	197	.	REL606	835547	G
SNP	198	.	REL606	842417	T
SNP	199	.	REL606	842944	A
SNP	200	.	REL606	842983	A
INS	201	.	REL606	845843	A	phylogeny_id=1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	202	.	REL606	847602	T
SNP	203	.	REL606	854649	A
SNP	204	.	REL606	863665	G
SNP	205	.	REL606	864903	T
DEL	206	.	REL606	865861	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	207	.	REL606	873719	T
SNP	208	.	REL606	878844	T
SNP	209	.	REL606	884562	G
SNP	210	.	REL606	886460	C
INS	211	.	REL606	891671	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	212	.	REL606	894055	C
SNP	213	.	REL606	895423	C
SNP	214	.	REL606	896246	T
SNP	215	.	REL606	898998	A
SNP	216	.	REL606	909134	T
SNP	217	.	REL606	916865	G
INS	218	.	REL606	917552	C	insert_position=1
INS	219	.	REL606	917552	C	insert_position=2
SNP	220	.	REL606	925760	A
SNP	221	.	REL606	928746	A
SNP	222	.	REL606	930954	T
SNP	223	.	REL606	934512	G
SNP	224	.	REL606	938116	G
SNP	225	.	REL606	940470	T
INS	226	.	REL606	942886	CCCC	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=6	repeat_seq=C
SNP	227	.	REL606	947894	G
SNP	228	.	REL606	956901	C
SNP	229	.	REL606	957734	G
SNP	230	.	REL606	962977	T
SNP	231	.	REL606	964308	T
SNP	232	.	REL606	967936	T
DEL	233	.	REL606	974742	1	phylogeny_id=1
INS	234	.	REL606	974742	G
SNP	235	.	REL606	980237	G
SNP	236	.	REL606	995583	G
SNP	237	.	REL606	996518	C
DEL	238	.	REL606	998942	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=G
SNP	239	.	REL606	1001043	G
SNP	240	.	REL606	1001224	C
DEL	241	.	REL606	1004100	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	242	.	REL606	1004233	G
SNP	243	.	REL606	1011642	C
SNP	244	.	REL606	1011718	A
DEL	245	.	REL606	1019315	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
INS	246	.	REL606	1021251	G	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=G
SNP	247	.	REL606	1025109	C
SNP	248	.	REL606	1025747	G
SNP	249	.	REL606	1030571	T
SNP	250	.	REL606	1031073	G
SNP	251	.	REL606	1035434	C
DEL	252	.	REL606	1036067	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
INS	253	.	REL606	1036067	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	254	.	REL606	1038561	T
SNP	255	.	REL606	1041314	T
DEL	256	.	REL606	1046830	1	phylogeny_id=1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	257	.	REL606	1048381	T
SNP	258	.	REL606	1053644	G
SNP	259	.	REL606	1056841	G
SNP	260	.	REL606	1057125	A
INS	261	.	REL606	1062292	CCC	phylogeny_id=1	repeat_length=1	repeat_new_copies=10	repeat_ref_copies=7	repeat_seq=C
SNP	262	.	REL606	1063791	A
SNP	263	.	REL606	1067058	G
INS	264	.	REL606	1077805	G
SNP	265	.	REL606	1079689	G
SNP	266	.	REL606	1087720	A
SNP	267	.	REL606	1095528	T
SNP	268	.	REL606	1100718	T
SNP	269	.	REL606	1101665	G
SNP	270	.	REL606	1108376	A
SNP	271	.	REL606	1119774	G
SNP	272	.	REL606	1121387	T
SNP	273	.	REL606	1130171	G
SNP	274	.	REL606	1132074	C
INS	275	.	REL606	1133042	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	276	.	REL606	1161406	T
SNP	277	.	REL606	1192351	G
SNP	278	.	REL606	1193327	C
SNP	279	.	REL606	1200800	G
SNP	280	.	REL606	1203135	G
SNP	281	.	REL606	1204554	G
DEL	282	.	REL606	1207563	1
INS	283	.	REL606	1221486	T	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=T
MOB	284	.	REL606	1224454	IS1	1	9
SNP	285	.	REL606	1229724	T
SNP	286	.	REL606	1232619	G
SNP	287	.	REL606	1246849	T
SNP	288	.	REL606	1246903	T
SNP	289	.	REL606	1253320	C
INS	290	.	REL606	1255982	G	insert_position=1
INS	291	.	REL606	1255982	G	insert_position=2
SNP	292	.	REL606	1258592	G
SNP	293	.	REL606	1259347	T
SNP	294	.	REL606	1259850	C
SNP	295	.	REL606	1266907	A
SNP	296	.	REL606	1279077	G
SNP	297	.	REL606	1286945	A
SNP	298	.	REL606	1302560	T
SNP	299	.	REL606	1306561	T
MOB	300	.	REL606	1311468	IS1	-1	9
SNP	301	.	REL606	1312549	G
SNP	302	.	REL606	1319608	T
SNP	303	.	REL606	1324211	G
SNP	304	.	REL606	1325825	G
SNP	305	.	REL606	1326670	G
SNP	306	.	REL606	1330945	G
SNP	307	.	REL606	1333165	T
SNP	308	.	REL606	1340554	T
SNP	309	.	REL606	1341872	A
DEL	310	.	REL606	1349565	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	311	.	REL606	1354315	G
SNP	312	.	REL606	1354410	A
SNP	313	.	REL606	1355214	G
SNP	314	.	REL606	1356023	G
SNP	315	.	REL606	1366869	G
DEL	316	.	REL606	1368412	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	317	.	REL606	1369212	T
SNP	318	.	REL606	1371247	G
SNP	319	.	REL606	1373240	A
SNP	320	.	REL606	1374742	T
SNP	321	.	REL606	1375508	G
INS	322	.	REL606	1375852	A
DEL	323	.	REL606	1378697	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
SNP	324	.	REL606	1383106	A
SNP	325	.	REL606	1385172	G
SNP	326	.	REL606	1387144	C
SNP	327	.	REL606	1389269	T
SNP	328	.	REL606	1389629	C
SNP	329	.	REL606	1390805	A
SNP	330	.	REL606	1399586	G
SNP	331	.	REL606	1400380	A
SNP	332	.	REL606	1406040	T
SNP	333	.	REL606	1408137	C
SNP	334	.	REL606	1408726	G
SNP	335	.	REL606	1408865	A
SNP	336	.	REL606	1409698	C
SNP	337	.	REL606	1421612	C
SNP	338	.	REL606	1440883	C
SNP	339	.	REL606	1445602	A
SNP	340	.	REL606	1447924	G
DEL	341	.	REL606	1448430	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
SNP	342	.	REL606	1451393	T
SNP	343	.	REL606	1452542	A
INS	344	.	REL606	1461878	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	345	.	REL606	1463186	C
SNP	346	.	REL606	1465797	G
SNP	347	.	REL606	1472798	A
SNP	348	.	REL606	1474330	G
SNP	349	.	REL606	1485028	G
SNP	350	.	REL606	1514171	T
SNP	351	.	REL606	1519148	C
SNP	352	.	REL606	1523368	C
SNP	353	.	REL606	1529409	G
SNP	354	.	REL606	1531512	C
INS	355	.	REL606	1535126	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	356	.	REL606	1535401	C
INS	357	.	REL606	1543893	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	358	.	REL606	1552332	G
SNP	359	.	REL606	1574324	C
SNP	360	.	REL606	1582350	G
SNP	361	.	REL606	1591533	G
CON	362	.	REL606	1600613	900	REL606:1426055-1425155	phylogeny_id=1
DEL	363	.	REL606	1609175	7554	between=IS3
DEL	364	.	REL606	1617945	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	365	.	REL606	1625330	G
SNP	366	.	REL606	1626725	A
SNP	367	.	REL606	1629088	A
SNP	368	.	REL606	1631140	A
SNP	369	.	REL606	1636327	G
SNP	370	.	REL606	1638219	A
SNP	371	.	REL606	1642492	C
SNP	372	.	REL606	1646650	G
SNP	373	.	REL606	1652374	G
INS	374	.	REL606	1660252	C	insert_position=1
INS	375	.	REL606	1660252	C	insert_position=2
SNP	376	.	REL606	1665369	C
SNP	377	.	REL606	1670600	C
SNP	378	.	REL606	1673102	A
SNP	379	.	REL606	1673642	A
DEL	380	.	REL606	1673654	2	repeat_length=2	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=GA
SNP	381	.	REL606	1682888	T
SNP	382	.	REL606	1686552	C
SNP	383	.	REL606	1688141	C
SNP	384	.	REL606	1690689	A
DEL	385	.	REL606	1691520	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	386	.	REL606	1694084	A
SNP	387	.	REL606	1696554	G
SNP	388	.	REL606	1697313	G
SNP	389	.	REL606	1698050	G
SNP	390	.	REL606	1703773	T
INS	391	.	REL606	1704688	GG	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=6	repeat_seq=G
SNP	392	.	REL606	1707496	A
SNP	393	.	REL606	1708010	G
INS	394	.	REL606	1711524	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
DEL	395	.	REL606	1714633	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	396	.	REL606	1726234	C
SNP	397	.	REL606	1731040	C
SNP	398	.	REL606	1733754	T
SNP	399	.	REL606	1737680	A
DEL	400	.	REL606	1746206	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=T
INS	401	.	REL606	1746745	G	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=G
DEL	402	.	REL606	1748123	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	403	.	REL606	1749342	G
SNP	404	.	REL606	1751386	G
INS	405	.	REL606	1776427	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
SNP	406	.	REL606	1782631	C
INS	407	.	REL606	1783750	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
INS	408	.	REL606	1786114	T
SNP	409	.	REL606	1790993	C
SNP	410	.	REL606	1802219	C
INS	411	.	REL606	1802394	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	412	.	REL606	1806541	C
SNP	413	.	REL606	1808551	T
SNP	414	.	REL606	1812329	T
SNP	415	.	REL606	1814306	A
SNP	416	.	REL606	1825635	A
SNP	417	.	REL606	1825890	C
SNP	418	.	REL606	1826622	C
SNP	419	.	REL606	1828353	G
INS	420	.	REL606	1832985	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	421	.	REL606	1845683	T
AMP	422	.	REL606	1845975	133	2
SNP	423	.	REL606	1847083	G
INS	424	.	REL606	1849061	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	425	.	REL606	1849397	C
SNP	426	.	REL606	1849812	A	phylogeny_id=1
SNP	427	.	REL606	1854001	C
INS	428	.	REL606	1856070	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	429	.	REL606	1858424	C	adjacent=IS186
SNP	430	.	REL606	1871582	A
SNP	431	.	REL606	1881296	A
SNP	432	.	REL606	1887642	A
SNP	433	.	REL606	1888708	C
SNP	434	.	REL606	1891497	A
SNP	435	.	REL606	1897298	C
SNP	436	.	REL606	1898722	A
SNP	437	.	REL606	1900323	C
SNP	438	.	REL606	1901050	A
SNP	439	.	REL606	1904064	C
SNP	440	.	REL606	1905589	C
SNP	441	.	REL606	1907608	C
SNP	442	.	REL606	1909652	A
DEL	443	.	REL606	1915618	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	444	.	REL606	1924754	C
SNP	445	.	REL606	1928817	C
SNP	446	.	REL606	1934836	A
DEL	447	.	REL606	1940857	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	448	.	REL606	1943120	T
DEL	449	.	REL606	1944481	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	450	.	REL606	1945730	G
SNP	451	.	REL606	1949227	A
SNP	452	.	REL606	1951560	A
SNP	453	.	REL606	1960890	C
SNP	454	.	REL606	1973065	A
SNP	455	.	REL606	1974693	C
SNP	456	.	REL606	1983717	C
SNP	457	.	REL606	1988828	C
SNP	458	.	REL606	1993869	C
SNP	459	.	REL606	1994478	C
DEL	460	.	REL606	1995207	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	461	.	REL606	1999639	A
INS	462	.	REL606	2001106	A	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=A
INS	463	.	REL606	2003747	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
SNP	464	.	REL606	2004705	T
SNP	465	.	REL606	2006069	A	adjacent=IS2
SNP	466	.	REL606	2006466	C	adjacent=IS2
DEL	467	.	REL606	2007567	1	phylogeny_id=1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=C
SNP	468	.	REL606	2011246	A
INS	469	.	REL606	2017730	GG	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=7	repeat_seq=G
DEL	470	.	REL606	2032399	23293
SNP	471	.	REL606	2086457	G
SNP	472	.	REL606	2088407	C
SNP	473	.	REL606	2088513	G
SNP	474	.	REL606	2089484	A
SNP	475	.	REL606	2090058	T
SNP	476	.	REL606	2093096	A
INS	477	.	REL606	2098681	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
DEL	478	.	REL606	2100308	22146
SNP	479	.	REL606	2102139	A	before=478
INS	480	.	REL606	2111278	A	before=478	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
DEL	481	.	REL606	2114852	1	before=478	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	482	.	REL606	2117925	A	before=478
SNP	483	.	REL606	2120407	A	before=478
SNP	484	.	REL606	2129734	A
SNP	485	.	REL606	2129834	A
SNP	486	.	REL606	2132366	T
SNP	487	.	REL606	2139828	A
SNP	488	.	REL606	2140223	T
SNP	489	.	REL606	2142633	A
SNP	490	.	REL606	2150993	C
SNP	491	.	REL606	2151546	A
DEL	492	.	REL606	2151650	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	493	.	REL606	2154329	G
SNP	494	.	REL606	2155230	A
SNP	495	.	REL606	2159318	A
SNP	496	.	REL606	2167106	G
SNP	497	.	REL606	2169450	A
SNP	498	.	REL606	2171395	A
DEL	499	.	REL606	2174246	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	500	.	REL606	2175287	G
SNP	501	.	REL606	2179193	C
SNP	502	.	REL606	2184665	A
SNP	503	.	REL606	2186143	C
SNP	504	.	REL606	2191577	A
DEL	505	.	REL606	2195256	1	no_normalize=1
DEL	506	.	REL606	2195257	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=C
SNP	507	.	REL606	2197577	C
SNP	508	.	REL606	2200987	C
SNP	509	.	REL606	2201446	T
SNP	510	.	REL606	2214850	C
SNP	511	.	REL606	2224713	C
SNP	512	.	REL606	2230067	T
SNP	513	.	REL606	2232567	A
DEL	514	.	REL606	2233004	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=G
INS	515	.	REL606	2233004	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
SNP	516	.	REL606	2233848	A
SNP	517	.	REL606	2236023	G
SNP	518	.	REL606	2238418	A
DEL	519	.	REL606	2239749	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=C
INS	520	.	REL606	2239749	C	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=C
SNP	521	.	REL606	2243852	A
SNP	522	.	REL606	2248629	T
SNP	523	.	REL606	2249632	C
SNP	524	.	REL606	2254443	T
SNP	525	.	REL606	2260165	C
SNP	526	.	REL606	2261442	C
SNP	527	.	REL606	2266279	A
SNP	528	.	REL606	2270184	A
SNP	529	.	REL606	2270332	C
SNP	530	.	REL606	2273826	A
SNP	531	.	REL606	2276483	A
SNP	532	.	REL606	2293155	C
SNP	533	.	REL606	2295113	C
INS	534	.	REL606	2297951	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	535	.	REL606	2298055	A
SNP	536	.	REL606	2299881	A
SNP	537	.	REL606	2302295	T
SNP	538	.	REL606	2304525	T
SNP	539	.	REL606	2308223	C
SNP	540	.	REL606	2313046	A
SNP	541	.	REL606	2319730	C
INS	542	.	REL606	2325290	CC	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=6	repeat_seq=C
SNP	543	.	REL606	2328018	T
SNP	544	.	REL606	2330927	A
SNP	545	.	REL606	2342677	A
SNP	546	.	REL606	2343393	T
SNP	547	.	REL606	2346648	A
SNP	548	.	REL606	2362999	C
SNP	549	.	REL606	2365132	C
SNP	550	.	REL606	2371305	C
SNP	551	.	REL606	2372673	A
SNP	552	.	REL606	2377349	A
SNP	553	.	REL606	2379221	C
SNP	554	.	REL606	2384083	C
SNP	555	.	REL606	2384706	T
SNP	556	.	REL606	2391069	A
SNP	557	.	REL606	2399291	C
SNP	558	.	REL606	2399470	C
SNP	559	.	REL606	2403265	A
SNP	560	.	REL606	2404592	C
SNP	561	.	REL606	2411615	A
SNP	562	.	REL606	2411622	G
SNP	563	.	REL606	2415435	G
SNP	564	.	REL606	2417019	C
SNP	565	.	REL606	2421506	T
SNP	566	.	REL606	2424027	C
SNP	567	.	REL606	2426904	T
SNP	568	.	REL606	2429170	A
SNP	569	.	REL606	2431702	C
SNP	570	.	REL606	2434171	C
SNP	571	.	REL606	2440272	T
SNP	572	.	REL606	2443479	C
INS	573	.	REL606	2450892	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	574	.	REL606	2452526	G
SNP	575	.	REL606	2460637	T
SNP	576	.	REL606	2471198	A
SNP	577	.	REL606	2476487	G
SNP	578	.	REL606	2476654	C
SNP	579	.	REL606	2478249	G
SNP	580	.	REL606	2483500	A
DEL	581	.	REL606	2486561	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=C
SNP	582	.	REL606	2489784	G
SNP	583	.	REL606	2492729	C
SNP	584	.	REL606	2493821	A
SNP	585	.	REL606	2496382	A
SNP	586	.	REL606	2502888	C
SNP	587	.	REL606	2511619	C
SNP	588	.	REL606	2511751	C
SNP	589	.	REL606	2512604	G
SNP	590	.	REL606	2514409	A
SNP	591	.	REL606	2517371	C
SNP	592	.	REL606	2520662	C
SNP	593	.	REL606	2523285	A
SNP	594	.	REL606	2523825	A
SNP	595	.	REL606	2528450	C
SNP	596	.	REL606	2529312	G
SNP	597	.	REL606	2534901	G
SNP	598	.	REL606	2539026	A
SNP	599	.	REL606	2543111	A
SNP	600	.	REL606	2544773	T
SNP	601	.	REL606	2545137	C
SNP	602	.	REL606	2548413	A
SNP	603	.	REL606	2559557	C
SNP	604	.	REL606	2566180	A
SNP	605	.	REL606	2570053	A
SNP	606	.	REL606	2573541	A
SNP	607	.	REL606	2576549	A
SNP	608	.	REL606	2585838	G
INS	609	.	REL606	2587901	C	insert_position=1
INS	610	.	REL606	2587901	C	insert_position=2
INS	611	.	REL606	2587901	C	insert_position=3
INS	612	.	REL606	2587901	C	insert_position=4
SNP	613	.	REL606	2587950	A
SNP	614	.	REL606	2592245	A
SNP	615	.	REL606	2597877	A
SNP	616	.	REL606	2603920	T
SNP	617	.	REL606	2606127	C
SNP	618	.	REL606	2609380	C
SNP	619	.	REL606	2610544	C
SNP	620	.	REL606	2619859	A
INS	621	.	REL606	2621090	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	622	.	REL606	2623416	T
SNP	623	.	REL606	2631815	C
SNP	624	.	REL606	2633002	T
SNP	625	.	REL606	2633980	A
SNP	626	.	REL606	2639803	A
SNP	627	.	REL606	2646652	C
SNP	628	.	REL606	2653278	C
SNP	629	.	REL606	2654879	A
SNP	630	.	REL606	2678189	C
SNP	631	.	REL606	2679733	C
SNP	632	.	REL606	2695097	C
SNP	633	.	REL606	2700836	C
SNP	634	.	REL606	2702484	A
INS	635	.	REL606	2704633	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	636	.	REL606	2706102	A
SNP	637	.	REL606	2708050	C
SNP	638	.	REL606	2710719	C
SNP	639	.	REL606	2721453	C
SNP	640	.	REL606	2723325	C
SNP	641	.	REL606	2729625	C
SNP	642	.	REL606	2733546	A
SNP	643	.	REL606	2735090	A
SNP	644	.	REL606	2735375	C
SNP	645	.	REL606	2736613	T
SNP	646	.	REL606	2737301	A
SNP	647	.	REL606	2748659	C
SNP	648	.	REL606	2754701	T
SNP	649	.	REL606	2757785	A
SNP	650	.	REL606	2760075	G
SNP	651	.	REL606	2766219	C
SNP	652	.	REL606	2772648	T
INS	653	.	REL606	2774206	C	adjacent=IS186	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
SNP	654	.	REL606	2786182	T
SNP	655	.	REL606	2786400	G
DEL	656	.	REL606	2789067	1	phylogeny_id=1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	657	.	REL606	2791576	C
SNP	658	.	REL606	2800862	C
SNP	659	.	REL606	2802969	T
DEL	660	.	REL606	2815132	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=T
SNP	661	.	REL606	2817771	G
SNP	662	.	REL606	2819859	C
DEL	663	.	REL606	2823071	1
SNP	664	.	REL606	2823319	C
SNP	665	.	REL606	2828743	A
INS	666	.	REL606	2837254	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	667	.	REL606	2837600	G
SNP	668	.	REL606	2839038	A
SNP	669	.	REL606	2846937	C
SNP	670	.	REL606	2853753	A
SNP	671	.	REL606	2858813	A
SNP	672	.	REL606	2860588	A
SNP	673	.	REL606	2862418	C
SNP	674	.	REL606	2873788	T
SNP	675	.	REL606	2881138	A
SNP	676	.	REL606	2881603	C
INS	677	.	REL606	2887059	G	insert_position=1
INS	678	.	REL606	2887059	G	insert_position=2
SNP	679	.	REL606	2889528	C
SNP	680	.	REL606	2895655	G
SNP	681	.	REL606	2896884	A
SNP	682	.	REL606	2897028	C
SNP	683	.	REL606	2897136	T
SNP	684	.	REL606	2899658	A
SNP	685	.	REL606	2901198	A
SNP	686	.	REL606	2908476	A
SNP	687	.	REL606	2908650	A
SNP	688	.	REL606	2911892	C
SNP	689	.	REL606	2913010	A
SNP	690	.	REL606	2922565	A
SNP	691	.	REL606	2924293	T
SNP	692	.	REL606	2926704	C
SNP	693	.	REL606	2933445	C
SNP	694	.	REL606	2937292	C
SNP	695	.	REL606	2948970	C
SNP	696	.	REL606	2949570	C
SNP	697	.	REL606	2961110	C
SNP	698	.	REL606	2968082	C
SNP	699	.	REL606	2976544	C
SNP	700	.	REL606	2977749	A
SNP	701	.	REL606	2980668	A
SNP	702	.	REL606	2986424	C
SNP	703	.	REL606	2987521	A
INS	704	.	REL606	2987764	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	705	.	REL606	2988491	A
SNP	706	.	REL606	2991824	A
SNP	707	.	REL606	2993395	C
INS	708	.	REL606	2996204	C	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=C
SNP	709	.	REL606	2997395	C
DEL	710	.	REL606	2997463	1	phylogeny_id=1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	711	.	REL606	2997788	A
SNP	712	.	REL606	3003538	T
INS	713	.	REL606	3005031	C	insert_position=1
INS	714	.	REL606	3005031	C	insert_position=2
SNP	715	.	REL606	3007881	C
SNP	716	.	REL606	3008783	A
DEL	717	.	REL606	3021896	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
DEL	718	.	REL606	3022662	2	repeat_length=2	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=TA
SNP	719	.	REL606	3029630	C
SNP	720	.	REL606	3036344	A
SNP	721	.	REL606	3037784	A
SNP	722	.	REL606	3038949	C
SNP	723	.	REL606	3039440	A
SNP	724	.	REL606	3041423	T
SNP	725	.	REL606	3043172	C
SNP	726	.	REL606	3051100	A
SNP	727	.	REL606	3055224	G
SNP	728	.	REL606	3061358	C
SNP	729	.	REL606	3062206	T
SNP	730	.	REL606	3064150	C
SNP	731	.	REL606	3067226	A
SNP	732	.	REL606	3073678	C
SNP	733	.	REL606	3075503	A
SNP	734	.	REL606	3086151	G
SNP	735	.	REL606	3087909	A
DEL	736	.	REL606	3088379	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	737	.	REL606	3091657	C
SNP	738	.	REL606	3096260	G
SNP	739	.	REL606	3115206	C
SNP	740	.	REL606	3115844	T
SNP	741	.	REL606	3118170	C
SNP	742	.	REL606	3119725	G
SNP	743	.	REL606	3123048	G
SNP	744	.	REL606	3125902	C
INS	745	.	REL606	3127677	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	746	.	REL606	3127838	C
SNP	747	.	REL606	3136629	A
SNP	748	.	REL606	3140746	A
SNP	749	.	REL606	3141186	C
SNP	750	.	REL606	3142824	A
SNP	751	.	REL606	3145003	A
SNP	752	.	REL606	3146065	A
SNP	753	.	REL606	3147638	T
SNP	754	.	REL606	3147648	A
SNP	755	.	REL606	3148893	C
SNP	756	.	REL606	3153332	T
SNP	757	.	REL606	3153471	G
SNP	758	.	REL606	3161001	C
SNP	759	.	REL606	3164163	A
SNP	760	.	REL606	3171761	T
SNP	761	.	REL606	3178278	G
SNP	762	.	REL606	3178584	C
SNP	763	.	REL606	3182178	G
DEL	764	.	REL606	3185049	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	765	.	REL606	3185560	C
SNP	766	.	REL606	3189150	C
SNP	767	.	REL606	3190732	A
SNP	768	.	REL606	3193464	A
INS	769	.	REL606	3201395	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	770	.	REL606	3203410	C
SNP	771	.	REL606	3206773	A
SNP	772	.	REL606	3212083	T
SNP	773	.	REL606	3212290	A
SNP	774	.	REL606	3218529	A
SNP	775	.	REL606	3220182	G
SNP	776	.	REL606	3230701	T
SNP	777	.	REL606	3234077	C
SNP	778	.	REL606	3241106	C
SNP	779	.	REL606	3241704	C
INS	780	.	REL606	3244240	C	insert_position=1
SNP	781	.	REL606	3250447	A
SNP	782	.	REL606	3257722	C
DEL	783	.	REL606	3268816	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	784	.	REL606	3268877	C
SNP	785	.	REL606	3269138	A
SNP	786	.	REL606	3277312	C
SNP	787	.	REL606	3288525	A
SNP	788	.	REL606	3289960	G
DEL	789	.	REL606	3300639	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	790	.	REL606	3303022	C
SNP	791	.	REL606	3310894	A
SNP	792	.	REL606	3312353	A
SNP	793	.	REL606	3312572	C
DEL	794	.	REL606	3313750	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
SNP	795	.	REL606	3315389	A
SNP	796	.	REL606	3318051	C
SNP	797	.	REL606	3320255	A
SNP	798	.	REL606	3321865	C
SNP	799	.	REL606	3325030	C
SNP	800	.	REL606	3326743	C
SNP	801	.	REL606	3331000	G
INS	802	.	REL606	3349654	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
SNP	803	.	REL606	3358222	A
SNP	804	.	REL606	3364539	G
SNP	805	.	REL606	3366393	G
SNP	806	.	REL606	3371501	C
SNP	807	.	REL606	3373127	C
SNP	808	.	REL606	3385583	A
SNP	809	.	REL606	3391198	A
SNP	810	.	REL606	3400075	C
SNP	811	.	REL606	3403632	C
DEL	812	.	REL606	3404479	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	813	.	REL606	3408679	C
SNP	814	.	REL606	3412623	A
SNP	815	.	REL606	3415923	A
SNP	816	.	REL606	3418383	A
SNP	817	.	REL606	3431168	C
SNP	818	.	REL606	3440262	G
SNP	819	.	REL606	3444187	A
DEL	820	.	REL606	3450927	1	repeat_length=1	repeat_new_copies=5	repeat_ref_copies=6	repeat_seq=A
SNP	821	.	REL606	3453439	A
SNP	822	.	REL606	3462622	C
SNP	823	.	REL606	3464015	A
SNP	824	.	REL606	3465910	A
SNP	825	.	REL606	3471662	C
SNP	826	.	REL606	3475318	A
SNP	827	.	REL606	3476102	C
SNP	828	.	REL606	3478428	A
SNP	829	.	REL606	3484200	A
SNP	830	.	REL606	3485127	A
SNP	831	.	REL606	3489302	C
SNP	832	.	REL606	3492779	G
SNP	833	.	REL606	3495978	G
SNP	834	.	REL606	3505683	C
DEL	835	.	REL606	3512383	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	836	.	REL606	3520455	T
SNP	837	.	REL606	3521090	C
SNP	838	.	REL606	3531176	T
SNP	839	.	REL606	3531887	C
SNP	840	.	REL606	3532601	A
SNP	841	.	REL606	3558497	C
SNP	842	.	REL606	3571503	C
SNP	843	.	REL606	3573340	G
DEL	844	.	REL606	3581370	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=C
INS	845	.	REL606	3581370	C	insert_position=1
INS	846	.	REL606	3581370	C	insert_position=2
SNP	847	.	REL606	3592407	G
SNP	848	.	REL606	3599885	A
SNP	849	.	REL606	3601561	G
SNP	850	.	REL606	3605942	A
SNP	851	.	REL606	3606204	C
SNP	852	.	REL606	3607090	C
SNP	853	.	REL606	3610949	C
SNP	854	.	REL606	3613824	C
SNP	855	.	REL606	3620839	A
SNP	856	.	REL606	3625586	G
SNP	857	.	REL606	3638118	C
SNP	858	.	REL606	3642753	T
INS	859	.	REL606	3650783	T
SNP	860	.	REL606	3657961	G
SNP	861	.	REL606	3661562	C
SNP	862	.	REL606	3662390	G
SNP	863	.	REL606	3670123	C
SNP	864	.	REL606	3671936	G
SNP	865	.	REL606	3677301	G
SNP	866	.	REL606	3677560	A
SNP	867	.	REL606	3683768	A
SNP	868	.	REL606	3693891	A
SNP	869	.	REL606	3695376	C
INS	870	.	REL606	3704530	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
INS	871	.	REL606	3715593	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	872	.	REL606	3715971	G
SNP	873	.	REL606	3724949	C
SNP	874	.	REL606	3736507	G
SNP	875	.	REL606	3755726	C
SNP	876	.	REL606	3762120	A
INS	877	.	REL606	3767551	T	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=T
INS	878	.	REL606	3775621	C	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=C
DEL	879	.	REL606	3779760	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=T
INS	880	.	REL606	3785643	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
INS	881	.	REL606	3786737	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	882	.	REL606	3793276	A	adjacent=IS30
SNP	883	.	REL606	3798873	G
SNP	884	.	REL606	3801791	A
SNP	885	.	REL606	3810219	C
DEL	886	.	REL606	3810685	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	887	.	REL606	3816080	C
SNP	888	.	REL606	3818805	C
SNP	889	.	REL606	3830820	A
SNP	890	.	REL606	3849514	T
SNP	891	.	REL606	3850656	C
SNP	892	.	REL606	3860130	A
SNP	893	.	REL606	3862276	A
DEL	894	.	REL606	3866007	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=A
SNP	895	.	REL606	3873717	C
INS	896	.	REL606	3875814	GG	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=6	repeat_seq=G
INS	897	.	REL606	3875874	A	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=A
SNP	898	.	REL606	3877484	A
SNP	899	.	REL606	3878721	C
SNP	900	.	REL606	3885236	G
SNP	901	.	REL606	3889648	T
INS	902	.	REL606	3891922	G	insert_position=1
INS	903	.	REL606	3891922	G	insert_position=2
DEL	904	.	REL606	3894999	4902	mediated=IS150
SNP	905	.	REL606	3913833	A
SNP	906	.	REL606	3914328	G
SNP	907	.	REL606	3925239	G
SNP	908	.	REL606	3925881	T
SNP	909	.	REL606	3927155	T
SNP	910	.	REL606	3930387	C
SNP	911	.	REL606	3939573	T
SNP	912	.	REL606	3942328	T
SNP	913	.	REL606	3954253	T
SNP	914	.	REL606	3956185	G
SNP	915	.	REL606	3963049	A
SNP	916	.	REL606	3963080	A
SNP	917	.	REL606	3976426	C
INS	918	.	REL606	3977480	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	919	.	REL606	3982275	T
SNP	920	.	REL606	3989407	G
SNP	921	.	REL606	4001585	C
SNP	922	.	REL606	4012750	C
SNP	923	.	REL606	4021488	T
SNP	924	.	REL606	4029159	G
SNP	925	.	REL606	4038315	G
SNP	926	.	REL606	4040031	A
MOB	927	.	REL606	4040840	IS1	-1	9
SNP	928	.	REL606	4046331	A
SNP	929	.	REL606	4053461	C
SNP	930	.	REL606	4057486	T
SNP	931	.	REL606	4061692	G
SNP	932	.	REL606	4081617	T
SNP	933	.	REL606	4083874	C
SNP	934	.	REL606	4088276	G
SNP	935	.	REL606	4091699	G
DEL	936	.	REL606	4092351	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	937	.	REL606	4100173	G
SNP	938	.	REL606	4101025	T
SNP	939	.	REL606	4102614	G
SNP	940	.	REL606	4111956	G
SNP	941	.	REL606	4112326	T
SNP	942	.	REL606	4124099	A
SNP	943	.	REL606	4136247	T
SNP	944	.	REL606	4176939	C
DEL	945	.	REL606	4179797	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=A
SNP	946	.	REL606	4182344	G
SNP	947	.	REL606	4183160	C
SNP	948	.	REL606	4185135	T
SNP	949	.	REL606	4185955	G
SNP	950	.	REL606	4186678	G
SNP	951	.	REL606	4200495	T
SNP	952	.	REL606	4201935	G
SNP	953	.	REL606	4202021	T
SNP	954	.	REL606	4202516	G
SNP	955	.	REL606	4204709	T
SNP	956	.	REL606	4205525	T
SNP	957	.	REL606	4206415	G
SNP	958	.	REL606	4208343	T
INS	959	.	REL606	4210080	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
INS	960	.	REL606	4218177	G	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=G
INS	961	.	REL606	4218863	T
SNP	962	.	REL606	4223468	G
SNP	963	.	REL606	4225898	T
SNP	964	.	REL606	4233773	A
SNP	965	.	REL606	4234778	A
SNP	966	.	REL606	4239547	G
INS	967	.	REL606	4244922	G	insert_position=1
SUB	968	.	REL606	4244923	1	GGG
SNP	969	.	REL606	4250055	T
SNP	970	.	REL606	4251585	T
SNP	971	.	REL606	4268250	G
SNP	972	.	REL606	4270368	T
SNP	973	.	REL606	4270492	C
DEL	974	.	REL606	4272039	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
INS	975	.	REL606	4272039	G	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=7	repeat_seq=G
SNP	976	.	REL606	4272910	T
SNP	977	.	REL606	4282687	T
SNP	978	.	REL606	4283148	C
INS	979	.	REL606	4290552	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
INS	980	.	REL606	4292002	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	981	.	REL606	4295828	T
SNP	982	.	REL606	4301891	T
SNP	983	.	REL606	4303399	A
SNP	984	.	REL606	4306146	T
SNP	985	.	REL606	4306667	A
SNP	986	.	REL606	4307050	G
SNP	987	.	REL606	4320532	T
SNP	988	.	REL606	4322203	A
SNP	989	.	REL606	4322419	C
SNP	990	.	REL606	4327259	G
DEL	991	.	REL606	4331220	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	992	.	REL606	4335644	T
DEL	993	.	REL606	4340169	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	994	.	REL606	4342226	C
SNP	995	.	REL606	4350777	T
SNP	996	.	REL606	4354872	G
SNP	997	.	REL606	4356768	G
SNP	998	.	REL606	4356879	A
SNP	999	.	REL606	4356940	G
SNP	1000	.	REL606	4374192	G
INS	1001	.	REL606	4375786	TGGCGC	repeat_length=6	repeat_new_copies=4	repeat_ref_copies=3	repeat_seq=TGGCGC
SNP	1002	.	REL606	4380868	T
INS	1003	.	REL606	4387087	A	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=5	repeat_seq=A
DEL	1004	.	REL606	4388208	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1005	.	REL606	4389994	G
SNP	1006	.	REL606	4401108	T
SNP	1007	.	REL606	4409111	T
SNP	1008	.	REL606	4411902	T
SNP	1009	.	REL606	4419190	A
SNP	1010	.	REL606	4426935	G
SNP	1011	.	REL606	4431036	C
SNP	1012	.	REL606	4434305	G
SNP	1013	.	REL606	4436868	T
SNP	1014	.	REL606	4437158	G
SNP	1015	.	REL606	4440651	T
SNP	1016	.	REL606	4442313	T
SNP	1017	.	REL606	4451162	A
SNP	1018	.	REL606	4453876	G
SNP	1019	.	REL606	4458990	G
SNP	1020	.	REL606	4465411	G
SNP	1021	.	REL606	4471093	C
INS	1022	.	REL606	4475811	G	insert_position=1
INS	1023	.	REL606	4475811	GG	insert_position=2
SNP	1024	.	REL606	4481402	C
INS	1025	.	REL606	4492360	A	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=A
SNP	1026	.	REL606	4493772	G	adjacent=IS600
SNP	1027	.	REL606	4501248	G
SNP	1028	.	REL606	4504802	A
SNP	1029	.	REL606	4510936	C
SNP	1030	.	REL606	4511730	C
SNP	1031	.	REL606	4524691	T
SNP	1032	.	REL606	4524696	A
SNP	1033	.	REL606	4529017	G
DEL	1034	.	REL606	4530139	1	repeat_length=1	repeat_new_copies=6	repeat_ref_copies=7	repeat_seq=G
SNP	1035	.	REL606	4534462	G
SNP	1036	.	REL606	4536641	C
DEL	1037	.	REL606	4537683	1	repeat_length=1	repeat_new_copies=8	repeat_ref_copies=9	repeat_seq=T
SNP	1038	.	REL606	4537913	T
SNP	1039	.	REL606	4541439	A
SNP	1040	.	REL606	4542699	G
INS	1041	.	REL606	4544692	G	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=G
SNP	1042	.	REL606	4544693	G
DEL	1043	.	REL606	4547207	3472	mediated=IS1
SNP	1044	.	REL606	4549822	G	before=1043
SNP	1045	.	REL606	4560971	T
INS	1046	.	REL606	4562563	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	1047	.	REL606	4571025	T
SNP	1048	.	REL606	4572324	T
SNP	1049	.	REL606	4574561	A
SNP	1050	.	REL606	4575038	T
SNP	1051	.	REL606	4576569	T
SNP	1052	.	REL606	4577349	G
SNP	1053	.	REL606	4584759	G
SNP	1054	.	REL606	4594850	T
INS	1055	.	REL606	4595328	G	repeat_length=1	repeat_new_copies=9	repeat_ref_copies=8	repeat_seq=G
SNP	1056	.	REL606	4606613	A
SNP	1057	.	REL606	4615700	A
SNP	1058	.	REL606	4619213	T
