# Makefile.in generated by automake 1.11.1 from Makefile.am.
# src/hawkeye/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008, 2009  Free Software Foundation,
# Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.




pkgdatadir = $(datadir)/amos
pkgincludedir = $(includedir)/amos
pkglibdir = $(libdir)/amos
pkglibexecdir = $(libexecdir)/amos
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-unknown-linux-gnu
host_triplet = x86_64-unknown-linux-gnu
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in \
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bin_PROGRAMS = hawkeye$(EXEEXT)
subdir = src/hawkeye
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/config/amos.m4 \
	$(top_srcdir)/config/getopt.m4 \
	$(top_srcdir)/config/onceonly_2_57.m4 \
	$(top_srcdir)/config/perlmodules.m4 \
	$(top_srcdir)/config/strtod.m4 $(top_srcdir)/config/strtol.m4 \
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am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
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CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
PROGRAMS = $(bin_PROGRAMS)
am__objects_1 = AssemblyStats.$(OBJEXT) BufferedLineEdit.$(OBJEXT) \
	CGraphContig.$(OBJEXT) CGraphEdge.$(OBJEXT) \
	CGraphView.$(OBJEXT) CGraphWindow.$(OBJEXT) \
	ChromoField.$(OBJEXT) ChromoPicker.$(OBJEXT) \
	ConsensusField.$(OBJEXT) ContigCanvasItem.$(OBJEXT) \
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	CoverageRectCanvasItem.$(OBJEXT) DetailWidget.$(OBJEXT) \
	FeatureBrowser.$(OBJEXT) FeatureCanvasItem.$(OBJEXT) \
	HistogramWidget.$(OBJEXT) HistogramWindow.$(OBJEXT) \
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	InsertPosition.$(OBJEXT) InsertWidget.$(OBJEXT) \
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	LaunchPadBase.$(OBJEXT) LibraryPicker.$(OBJEXT) \
	MainWindow.$(OBJEXT) NChartWindow.$(OBJEXT) \
	NChartWindowBase.$(OBJEXT) NChartWidget.$(OBJEXT) \
	NetworkCom.$(OBJEXT) OverviewField.$(OBJEXT) \
	QueryWidget.$(OBJEXT) RangeScrollBar.$(OBJEXT) \
	ReadInfo.$(OBJEXT) ReadPicker.$(OBJEXT) RenderSeq.$(OBJEXT) \
	ScaffoldPicker.$(OBJEXT) SelectionWidget.$(OBJEXT) \
	SplashScreen.$(OBJEXT) TilingField.$(OBJEXT) \
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am_hawkeye_OBJECTS = main.$(OBJEXT) ChromoStore.$(OBJEXT) \
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am__objects_2 = AssemblyStats.moc.$(OBJEXT) \
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	CGraphWindow.moc.$(OBJEXT) ChromoField.moc.$(OBJEXT) \
	ChromoPicker.moc.$(OBJEXT) ConsensusField.moc.$(OBJEXT) \
	ContigCanvasItem.moc.$(OBJEXT) ContigPicker.moc.$(OBJEXT) \
	CoverageCanvasItem.moc.$(OBJEXT) \
	CoverageRectCanvasItem.moc.$(OBJEXT) \
	DetailWidget.moc.$(OBJEXT) FeatureBrowser.moc.$(OBJEXT) \
	FeatureCanvasItem.moc.$(OBJEXT) HistogramWidget.moc.$(OBJEXT) \
	HistogramWindow.moc.$(OBJEXT) InsertCanvasItem.moc.$(OBJEXT) \
	InsertField.moc.$(OBJEXT) InsertPosition.moc.$(OBJEXT) \
	InsertWidget.moc.$(OBJEXT) InsertWindow.moc.$(OBJEXT) \
	LaunchPad.moc.$(OBJEXT) LaunchPadBase.moc.$(OBJEXT) \
	LibraryPicker.moc.$(OBJEXT) MainWindow.moc.$(OBJEXT) \
	NChartWindow.moc.$(OBJEXT) NChartWindowBase.moc.$(OBJEXT) \
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	ScaffoldPicker.moc.$(OBJEXT) SelectionWidget.moc.$(OBJEXT) \
	SplashScreen.moc.$(OBJEXT) TilingField.moc.$(OBJEXT) \
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nodist_hawkeye_OBJECTS = $(am__objects_2)
hawkeye_OBJECTS = $(am_hawkeye_OBJECTS) $(nodist_hawkeye_OBJECTS)
am__DEPENDENCIES_1 =
hawkeye_DEPENDENCIES = $(am__DEPENDENCIES_1) \
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	$(top_builddir)/src/Common/libCommon.a \
	$(top_builddir)/src/AMOS/libAMOS.a \
	$(top_builddir)/src/Slice/libSlice.a \
	$(top_builddir)/src/Staden/read/libread.a
DEFAULT_INCLUDES = -I. -I$(top_builddir)
depcomp = $(SHELL) $(top_srcdir)/config/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
	$(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
CXXLD = $(CXX)
CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
	-o $@
COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
CCLD = $(CC)
LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
SOURCES = $(hawkeye_SOURCES) $(nodist_hawkeye_SOURCES)
DIST_SOURCES = $(hawkeye_SOURCES)
ETAGS = etags
CTAGS = ctags
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run aclocal-1.11
AMTAR = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run tar
AUTOCONF = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run autoconf
AUTOHEADER = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run autoheader
AUTOMAKE = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run automake-1.11
AWK = gawk
BLAT = :
BOOST_CXXFLAGS = -I/usr/include -DAMOS_HAVE_BOOST
BOOST_DIR = /usr/include
CA_CXXFLAGS = 
CA_DIR = 
CA_LDADD = 
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
CPP = gcc -E
CPPFLAGS = 
CXX = g++
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -g -O2
CYGPATH_W = echo
DEFS = -DHAVE_CONFIG_H
DELTAFILTER = :
DEPDIR = .deps
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = /usr/bin/grep -E
EXEEXT = 
GETOPT_H = 
GREP = /usr/bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
LDFLAGS = 
LIBOBJS = 
LIBS = -lz -lc -lm 
LN_S = ln -s
LTLIBOBJS = 
MAKEINFO = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/missing --run makeinfo
MKDIR_P = /usr/bin/mkdir -p
NUCMER = :
OBJEXT = o
PACKAGE = amos
PACKAGE_BUGREPORT = amos-help@lists.sourceforge.net
PACKAGE_NAME = AMOS Assembler
PACKAGE_STRING = AMOS Assembler 3.1.0
PACKAGE_TARNAME = amos
PACKAGE_URL = 
PACKAGE_VERSION = 3.1.0
PATH_SEPARATOR = :
PERL = /usr/bin/perl
POW_LIB = 
PYTHON = /usr/bin/python
QT_CXXFLAGS = 
QT_LIBS = 
QT_MOC = 
QT_QMAKE = 
RANLIB = ranlib
SET_MAKE = 
SHELL = /bin/sh
SHOWCOORDS = :
STRIP = 
VERSION = 3.1.0
XMKMF = 
X_CFLAGS = 
X_EXTRA_LIBS = 
X_LIBS = 
X_PRE_LIBS =  -lSM -lICE
abs_builddir = /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/src/hawkeye
abs_srcdir = /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/src/hawkeye
abs_top_builddir = /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0
abs_top_srcdir = /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0
ac_ct_CC = gcc
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
am__quote = 
am__tar = ${AMTAR} chof - "$$tardir"
am__untar = ${AMTAR} xf -
amosincludedir = ${prefix}/include/AMOS
amoslibdir = ${exec_prefix}/lib/AMOS
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/amos-3.1.0
dvidir = ${docdir}
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0/config/install-sh
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
mandir = ${datarootdir}/man
mkdir_p = /usr/bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
prefix = /home/dxh594/Fall2020/cs594/hw4/amos-3.1.0
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
sysconfdir = ${prefix}/etc
target_alias = 
tigrincludedir = ${prefix}/include/TIGR
tigrlibdir = ${exec_prefix}/lib/TIGR
top_build_prefix = ../../
top_builddir = ../..
top_srcdir = ../..
AM_CPPFLAGS = \
    $(QT_CXXFLAGS)  \
	-I$(top_srcdir)/src/Common \
	-I$(top_srcdir)/src/Slice  \
	-I$(top_srcdir)/src/AMOS   \
	-I$(top_srcdir)/src/Staden/read \
    -I$(top_srcdir)/src/Contig

hawkeye_MOCSOURCES = \
        AssemblyStats.cc       \
        BufferedLineEdit.cc    \
        CGraphContig.cc        \
        CGraphEdge.cc          \
        CGraphView.cc          \
        CGraphWindow.cc        \
        ChromoField.cc         \
        ChromoPicker.cc        \
        ConsensusField.cc      \
        ContigCanvasItem.cc    \
        ContigPicker.cc        \
        CoverageCanvasItem.cc  \
        CoverageRectCanvasItem.cc \
        DetailWidget.cc        \
        FeatureBrowser.cc      \
        FeatureCanvasItem.cc   \
        HistogramWidget.cc     \
        HistogramWindow.cc     \
        InsertCanvasItem.cc    \
        InsertField.cc         \
        InsertPosition.cc      \
        InsertWidget.cc        \
        InsertWindow.cc        \
        LaunchPad.cc           \
        LaunchPadBase.cc       \
        LibraryPicker.cc       \
        MainWindow.cc          \
        NChartWindow.cc        \
        NChartWindowBase.cc    \
        NChartWidget.cc        \
        NetworkCom.cc          \
        OverviewField.cc       \
        QueryWidget.cc         \
        RangeScrollBar.cc      \
        ReadInfo.cc            \
        ReadPicker.cc          \
        RenderSeq.cc           \
        ScaffoldPicker.cc      \
        SelectionWidget.cc     \
        SplashScreen.cc        \
        TilingField.cc         \
        TilingFrame.cc

nodist_hawkeye_SOURCES = $(hawkeye_MOCSOURCES:.cc=.moc.cc)
hawkeyeHeaders = $(hawkeye_MOCSOURCES:.cc=.hh) \
                    AlignmentInfo.hh 

BUILT_SOURCES = $(hawkeye_MOCSOURCES:.cc=.moc.cc)
CLEANFILES = $(hawkeye_MOCSOURCES:.cc=.moc.cc)
hawkeye_SOURCES = \
        main.cc                \
        ChromoStore.cc \
        ChromoStore.hh \
	UIElements.cc          \
	UIElements.hh          \
        NChartStats.cc         \
        NChartStats.hh         \
        $(hawkeye_MOCSOURCES)

EXTRA_DIST = \
        hawkeye.pro \
        $(hawkeyeHeaders) \
        icons/AAI.xpm \
        icons/fontdecrease.xpm \
        icons/fontincrease.xpm \
        icons/rangearrow_down.png \
        icons/rangearrow_left.png \
        icons/rangearrow_right.png \
        icons/rangearrow_up.png \
        icons/rangebar_horiz.png \
        icons/rangebar_vert.png \
        icons/rangegrip_down.png \
        icons/rangegrip_left.png \
        icons/rangegrip_right.png \
        icons/rangegrip_up.png \
        icons/rangegroove_horiz.png \
        icons/rangegroove_vert.png \
        icons/rangearrow_down.xpm \
        icons/rangearrow_left.xpm \
        icons/rangearrow_right.xpm \
        icons/rangearrow_up.xpm \
        icons/rangebar_horiz.xpm \
        icons/rangebar_vert.xpm \
        icons/rangegrip_down.xpm \
        icons/rangegrip_left.xpm \
        icons/rangegrip_right.xpm \
        icons/rangegrip_up.xpm \
        icons/rangegroove_horiz.xpm \
        icons/rangegroove_vert.xpm \
        icons/pointer_tool.xpm \
        icons/zoom_in.xpm \
        icons/zoom_out.xpm \
        icons/Hawkeye.xpm \
        icons/Hawkeye.jpg

hawkeye_LDADD = $(QT_LIBS) $(EXTRA_LDADD) \
                $(top_builddir)/src/Contig/libDataStore.a \
                $(top_builddir)/src/Common/libCommon.a   \
                $(top_builddir)/src/AMOS/libAMOS.a       \
                $(top_builddir)/src/Slice/libSlice.a     \
                $(top_builddir)/src/Staden/read/libread.a

all: $(BUILT_SOURCES)
	$(MAKE) $(AM_MAKEFLAGS) all-am

.SUFFIXES:
.SUFFIXES: .cc .o .obj
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am $(top_srcdir)/config/amos.mk $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign src/hawkeye/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --foreign src/hawkeye/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
	esac;

$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	for p in $$list; do echo "$$p $$p"; done | \
	sed 's/$(EXEEXT)$$//' | \
	while read p p1; do if test -f $$p; \
	  then echo "$$p"; echo "$$p"; else :; fi; \
	done | \
	sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
	    -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
	sed 'N;N;N;s,\n, ,g' | \
	$(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
	  { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
	    if ($$2 == $$4) files[d] = files[d] " " $$1; \
	    else { print "f", $$3 "/" $$4, $$1; } } \
	  END { for (d in files) print "f", d, files[d] }' | \
	while read type dir files; do \
	    if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
	    test -z "$$files" || { \
	      echo " $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
	      $(INSTALL_PROGRAM_ENV) $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
	    } \
	; done

uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	files=`for p in $$list; do echo "$$p"; done | \
	  sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
	      -e 's/$$/$(EXEEXT)/' `; \
	test -n "$$list" || exit 0; \
	echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
	cd "$(DESTDIR)$(bindir)" && rm -f $$files

clean-binPROGRAMS:
	-test -z "$(bin_PROGRAMS)" || rm -f $(bin_PROGRAMS)
hawkeye$(EXEEXT): $(hawkeye_OBJECTS) $(hawkeye_DEPENDENCIES) 
	@rm -f hawkeye$(EXEEXT)
	$(CXXLINK) $(hawkeye_OBJECTS) $(hawkeye_LDADD) $(LIBS)

mostlyclean-compile:
	-rm -f *.$(OBJEXT)

distclean-compile:
	-rm -f *.tab.c

include ./$(DEPDIR)/AssemblyStats.Po
include ./$(DEPDIR)/AssemblyStats.moc.Po
include ./$(DEPDIR)/BufferedLineEdit.Po
include ./$(DEPDIR)/BufferedLineEdit.moc.Po
include ./$(DEPDIR)/CGraphContig.Po
include ./$(DEPDIR)/CGraphContig.moc.Po
include ./$(DEPDIR)/CGraphEdge.Po
include ./$(DEPDIR)/CGraphEdge.moc.Po
include ./$(DEPDIR)/CGraphView.Po
include ./$(DEPDIR)/CGraphView.moc.Po
include ./$(DEPDIR)/CGraphWindow.Po
include ./$(DEPDIR)/CGraphWindow.moc.Po
include ./$(DEPDIR)/ChromoField.Po
include ./$(DEPDIR)/ChromoField.moc.Po
include ./$(DEPDIR)/ChromoPicker.Po
include ./$(DEPDIR)/ChromoPicker.moc.Po
include ./$(DEPDIR)/ChromoStore.Po
include ./$(DEPDIR)/ConsensusField.Po
include ./$(DEPDIR)/ConsensusField.moc.Po
include ./$(DEPDIR)/ContigCanvasItem.Po
include ./$(DEPDIR)/ContigCanvasItem.moc.Po
include ./$(DEPDIR)/ContigPicker.Po
include ./$(DEPDIR)/ContigPicker.moc.Po
include ./$(DEPDIR)/CoverageCanvasItem.Po
include ./$(DEPDIR)/CoverageCanvasItem.moc.Po
include ./$(DEPDIR)/CoverageRectCanvasItem.Po
include ./$(DEPDIR)/CoverageRectCanvasItem.moc.Po
include ./$(DEPDIR)/DetailWidget.Po
include ./$(DEPDIR)/DetailWidget.moc.Po
include ./$(DEPDIR)/FeatureBrowser.Po
include ./$(DEPDIR)/FeatureBrowser.moc.Po
include ./$(DEPDIR)/FeatureCanvasItem.Po
include ./$(DEPDIR)/FeatureCanvasItem.moc.Po
include ./$(DEPDIR)/HistogramWidget.Po
include ./$(DEPDIR)/HistogramWidget.moc.Po
include ./$(DEPDIR)/HistogramWindow.Po
include ./$(DEPDIR)/HistogramWindow.moc.Po
include ./$(DEPDIR)/InsertCanvasItem.Po
include ./$(DEPDIR)/InsertCanvasItem.moc.Po
include ./$(DEPDIR)/InsertField.Po
include ./$(DEPDIR)/InsertField.moc.Po
include ./$(DEPDIR)/InsertPosition.Po
include ./$(DEPDIR)/InsertPosition.moc.Po
include ./$(DEPDIR)/InsertWidget.Po
include ./$(DEPDIR)/InsertWidget.moc.Po
include ./$(DEPDIR)/InsertWindow.Po
include ./$(DEPDIR)/InsertWindow.moc.Po
include ./$(DEPDIR)/LaunchPad.Po
include ./$(DEPDIR)/LaunchPad.moc.Po
include ./$(DEPDIR)/LaunchPadBase.Po
include ./$(DEPDIR)/LaunchPadBase.moc.Po
include ./$(DEPDIR)/LibraryPicker.Po
include ./$(DEPDIR)/LibraryPicker.moc.Po
include ./$(DEPDIR)/MainWindow.Po
include ./$(DEPDIR)/MainWindow.moc.Po
include ./$(DEPDIR)/NChartStats.Po
include ./$(DEPDIR)/NChartWidget.Po
include ./$(DEPDIR)/NChartWidget.moc.Po
include ./$(DEPDIR)/NChartWindow.Po
include ./$(DEPDIR)/NChartWindow.moc.Po
include ./$(DEPDIR)/NChartWindowBase.Po
include ./$(DEPDIR)/NChartWindowBase.moc.Po
include ./$(DEPDIR)/NetworkCom.Po
include ./$(DEPDIR)/NetworkCom.moc.Po
include ./$(DEPDIR)/OverviewField.Po
include ./$(DEPDIR)/OverviewField.moc.Po
include ./$(DEPDIR)/QueryWidget.Po
include ./$(DEPDIR)/QueryWidget.moc.Po
include ./$(DEPDIR)/RangeScrollBar.Po
include ./$(DEPDIR)/RangeScrollBar.moc.Po
include ./$(DEPDIR)/ReadInfo.Po
include ./$(DEPDIR)/ReadInfo.moc.Po
include ./$(DEPDIR)/ReadPicker.Po
include ./$(DEPDIR)/ReadPicker.moc.Po
include ./$(DEPDIR)/RenderSeq.Po
include ./$(DEPDIR)/RenderSeq.moc.Po
include ./$(DEPDIR)/ScaffoldPicker.Po
include ./$(DEPDIR)/ScaffoldPicker.moc.Po
include ./$(DEPDIR)/SelectionWidget.Po
include ./$(DEPDIR)/SelectionWidget.moc.Po
include ./$(DEPDIR)/SplashScreen.Po
include ./$(DEPDIR)/SplashScreen.moc.Po
include ./$(DEPDIR)/TilingField.Po
include ./$(DEPDIR)/TilingField.moc.Po
include ./$(DEPDIR)/TilingFrame.Po
include ./$(DEPDIR)/TilingFrame.moc.Po
include ./$(DEPDIR)/UIElements.Po
include ./$(DEPDIR)/main.Po

.cc.o:
	$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
#	$(CXXCOMPILE) -c -o $@ $<

.cc.obj:
	$(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
	$(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
#	source='$<' object='$@' libtool=no \
#	DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) \
#	$(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`

ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	mkid -fID $$unique
tags: TAGS

TAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	set x; \
	here=`pwd`; \
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	shift; \
	if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
	  test -n "$$unique" || unique=$$empty_fix; \
	  if test $$# -gt 0; then \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      "$$@" $$unique; \
	  else \
	    $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	      $$unique; \
	  fi; \
	fi
ctags: CTAGS
CTAGS:  $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	test -z "$(CTAGS_ARGS)$$unique" \
	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
	     $$unique

GTAGS:
	here=`$(am__cd) $(top_builddir) && pwd` \
	  && $(am__cd) $(top_srcdir) \
	  && gtags -i $(GTAGS_ARGS) "$$here"

distclean-tags:
	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags

distdir: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: $(BUILT_SOURCES)
	$(MAKE) $(AM_MAKEFLAGS) check-am
all-am: Makefile $(PROGRAMS)
installdirs:
	for dir in "$(DESTDIR)$(bindir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: $(BUILT_SOURCES)
	$(MAKE) $(AM_MAKEFLAGS) install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:

clean-generic:
	-test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
	-test -z "$(BUILT_SOURCES)" || rm -f $(BUILT_SOURCES)
clean: clean-am

clean-am: clean-binPROGRAMS clean-generic mostlyclean-am

distclean: distclean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-tags

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am:

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am: install-binPROGRAMS
	@$(NORMAL_INSTALL)
	$(MAKE) $(AM_MAKEFLAGS) install-exec-hook
install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-compile mostlyclean-generic

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-binPROGRAMS
	@$(NORMAL_INSTALL)
	$(MAKE) $(AM_MAKEFLAGS) uninstall-hook
.MAKE: all check install install-am install-exec-am install-strip \
	uninstall-am

.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
	clean-generic ctags distclean distclean-compile \
	distclean-generic distclean-tags distdir dvi dvi-am html \
	html-am info info-am install install-am install-binPROGRAMS \
	install-data install-data-am install-dvi install-dvi-am \
	install-exec install-exec-am install-exec-hook install-html \
	install-html-am install-info install-info-am install-man \
	install-pdf install-pdf-am install-ps install-ps-am \
	install-strip installcheck installcheck-am installdirs \
	maintainer-clean maintainer-clean-generic mostlyclean \
	mostlyclean-compile mostlyclean-generic pdf pdf-am ps ps-am \
	tags uninstall uninstall-am uninstall-binPROGRAMS \
	uninstall-hook


install-exec-hook: install-bin-scripts-hook

uninstall-hook: uninstall-bin-scripts-hook

install-bin-scripts-hook: $(dist_bin_SCRIPTS) $(bin_SCRIPTS)
	@$(NORMAL_INSTALL)
	@list='$(dist_bin_SCRIPTS) $(bin_SCRIPTS)'; for p in $$list; do \
          f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
          b=`echo "$$p" | sed 's|^.*/||;s|.[^.]*$$||;$(transform)'`; \
          if test -f "$(DESTDIR)$(bindir)/$$f"  &&  test "$$f" != "$$b"; then \
            $(INSTALL_SCRIPT) "$(DESTDIR)$(bindir)/$$f" "$(DESTDIR)$(bindir)/$$b" \
            || exit 1; \
            case "$$p" in \
              *.pl) \
                echo " configuring perl '$$b'"; \
                echo '#!$(PERL)' > "$(DESTDIR)$(bindir)/$$b"; \
                echo 'use lib "$(libdir)";' >> "$(DESTDIR)$(bindir)/$$b"; \
                sed -e '1 {s|^#!.*$$||;}' \
                    "$(DESTDIR)$(bindir)/$$f" >> "$(DESTDIR)$(bindir)/$$b" \
                || exit 1; \
                ;; \
              *.py) \
                echo " configuring python '$$b'"; \
                echo '#!$(PYTHON)' > "$(DESTDIR)$(bindir)/$$b"; \
                sed -e '1 {s|^#!.*$$||;}' \
                    -e 's|^AMOSDIR[     ]*=.*$$|AMOSDIR=\"$(bindir)/\"|' \
                    "$(DESTDIR)$(bindir)/$$f" >> "$(DESTDIR)$(bindir)/$$b" \
                || exit 1; \
                ;; \
              *.acf) \
                echo " configuring acf '$$b'"; \
                echo '#!$(bindir)/runAmos -C' > "$(DESTDIR)$(bindir)/$$b"; \
                sed -e 's|^BINDIR[ 	]*=.*$$|BINDIR=$(bindir)|' \
                    -e 's|^NUCMER[ 	]*=.*$$|NUCMER=$(NUCMER)|' \
                    -e 's|^DELTAFILTER[        ]*=.*$$|DELTAFILTER=$(DELTAFILTER)|' \
                    "$(DESTDIR)$(bindir)/$$f" >> "$(DESTDIR)$(bindir)/$$b" \
                || exit 1; \
                ;; \
              *) \
                echo " configuring '$$b'"; \
                cp "$(DESTDIR)$(bindir)/$$f" "$(DESTDIR)$(bindir)/$$b" \
                ;; \
            esac; \
            rm -f "$(DESTDIR)$(bindir)/$$f"; \
          else :; fi; \
        done

uninstall-bin-scripts-hook:
	@$(NORMAL_UNINSTALL)
	@list='$(dist_bin_SCRIPTS) $(bin_SCRIPTS)'; for p in $$list; do \
          b=`echo "$$p" | sed 's|^.*/||;s|.[^.]*$$||;$(transform)'`; \
          echo " rm -f '$(DESTDIR)$(bindir)/$$b'"; \
          rm -f "$(DESTDIR)$(bindir)/$$b"; \
        done

%.moc.cc: %.hh
	$(QT_MOC) -o $@ $<

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
