Dear transformers team, how could I use bert to NER task?

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Dear  transformers team,
I have train and test corpus with BIO tags, like below:
The	O
patient	O
was	O
noted	O
with	O
first	O
depressive	O
episode	O
at	O
aged	O
36	O
.	O

How could I use bert to train my data to produce models and to predict the BIO tags of test data?
The resource have many programs, but I have no ideas that which program is what I need.

I would like to use google colab to run the program that could save python environmental problems.

Could you offer the tutorial of Bert NER task? 

Thank you
   Best regards;
Hi,

Have a look at the following script from Huggingface:

https://github.com/huggingface/transformers/blob/master/examples/token-classification/run_ner.py

It shows how you can finetune a pretrained BERT-model for NER.
Remember to take a look at the utility code as well, since this is the code preparing and  creating your features (and tensors in general).

https://github.com/huggingface/transformers/blob/master/examples/token-classification/utils_ner.py

Regards<|||||>
> Hi,
> 
> Have a look at the following script from Huggingface:
> 
> https://github.com/huggingface/transformers/blob/master/examples/token-classification/run_ner.py
> 
> It shows how you can finetune a pretrained BERT-model for NER.
> Remember to take a look at the utility code as well, since this is the code preparing and creating your features (and tensors in general).
> 
> https://github.com/huggingface/transformers/blob/master/examples/token-classification/utils_ner.py
> 
> Regards

Thanks for your response very much.

Actually I am not good at python programming.

run_ner.py could create a new pretrained model or I could us it to fine tune a existed model to my target NER task?

What are the functions of these two programs? And what parameters should I set?
What are the formats of train and test data?

I also could not find these two programs in the download folder. 
![image](https://user-images.githubusercontent.com/16911126/93067378-ba15fe00-f6ad-11ea-99ab-e4fd87742e0b.png)

By the way, could you offer the tutorial of colab format of NER task just like below link?
https://www.depends-on-the-definition.com/named-entity-recognition-with-bert/

It is complicated and consuming to set virtual environment in PC.

Thank you
       Best regards; 


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