input_ids_seq_length is always 1
### System Info

- `transformers` version: 4.26.1
- Platform: Linux-5.4.0-113-generic-x86_64-with-glibc2.29
- Python version: 3.8.10
- Huggingface_hub version: 0.12.1
- PyTorch version (GPU?): 1.13.1+cu117 (True)
- Tensorflow version (GPU?): 2.8.0 (True)
- Flax version (CPU?/GPU?/TPU?): 0.5.0 (gpu)
- Jax version: 0.3.13
- JaxLib version: 0.3.10
- Using GPU in script?: yes

I am trying to generate output that is equal in length to the input (partially to avoid hallucinations and repetitions). In src/transformers/generation/utils.py I read how input length is determined: If self.config.is_encoder_decoder (which is the case for me), input_ids_seq_length calculates the length of the input ids coming from _prepare_decoder_input_ids_for_generation, which makes a tensor with dimension (batch_size, 1) filled with start_tokens. This means the input_ids_seq_length is always 1, making it useless for determining the input length (and determining the output length based on that). 

### Who can help?

@sgugger 
@muellerzr

### Information

- [ ] The official example scripts
- [X] My own modified scripts

### Tasks

- [ ] An officially supported task in the `examples` folder (such as GLUE/SQuAD, ...)
- [X] My own task or dataset (give details below)

### Reproduction

The problem arises in a script of my own, but this example also highlights it: (the task I am working on is not summarization but grammar correction, thats why I want the input length to be equal to the output length)

```
from transformers import AutoTokenizer, T5ForConditionalGeneration, GenerationConfig

tokenizer = AutoTokenizer.from_pretrained("t5-small")
model = T5ForConditionalGeneration.from_pretrained("t5-small")
config = GenerationConfig(max_new_tokens=0)

input_ids = tokenizer("summarize: My friends are cool but they eat too many carbs.", return_tensors="pt").input_ids
outputs = model.generate(input_ids, generation_config=config)
print(tokenizer.decode(outputs[0], skip_special_tokens=True))
```

### Expected behavior

I would expect the output length to be determined by the input length + max_new_tokens:
generation_config.max_length = generation_config.max_new_tokens + input_ids_seq_length

This is the case, but input_ids_seq_length is (wrongfully) always 1, making the output length independent of the input and equal to max_new_tokens+1. 
cc @gante <|||||>Hey @ChrisSpraaklab 👋 In both types of models, `input_ids_seq_length` is relative to the output of the model, which is different for encoder-decoder (does not contain the prompt) and decoder-only models (contains the prompt). I agree that we might benefit from a rework there, for clarity :)

In any case, let's sort out your immediate issue! As the argument indicates, `max_new_tokens` will make the model generate up to `max_new_tokens` new tokens. As such, if you want to generate an output equal to the input, you'll have to set `max_new_tokens=input_ids.shape[1]`.

Also, bear in mind that encoder-decoder models ALWAYS start the output with a BOS token. As such, the length of the output will be the length of the input + 1.<|||||>@gante Thanks for your quick response. However, what I mean is that when input_ids_seq_length is set to input_ids.shape[-1], this value is always equal to 1 (as it comes from _prepare_decoder_input_ids_for_generation). 
```
# 5. Prepare `input_ids` which will be used for auto-regressive generation
        if self.config.is_encoder_decoder:
            input_ids = self._prepare_decoder_input_ids_for_generation(
                batch_size,
                decoder_start_token_id=generation_config.decoder_start_token_id,
                bos_token_id=generation_config.bos_token_id,
                model_kwargs=model_kwargs,
                device=inputs_tensor.device,
            )
        else:
            input_ids = inputs_tensor if model_input_name == "input_ids" else model_kwargs.pop("input_ids")

        # 6. Prepare `max_length` depending on other stopping criteria.
        input_ids_seq_length = input_ids.shape[-1]
        has_default_max_length = kwargs.get("max_length") is None and generation_config.max_length is not None
        if has_default_max_length and generation_config.max_new_tokens is None:
            warnings.warn(
                f"Using `max_length`'s default ({generation_config.max_length}) to control the generation length. "
                "This behaviour is deprecated and will be removed from the config in v5 of Transformers -- we"
                " recommend using `max_new_tokens` to control the maximum length of the generation.",
                UserWarning,
            )
        elif generation_config.max_new_tokens is not None:
            generation_config.max_length = generation_config.max_new_tokens + input_ids_seq_length
            if not has_default_max_length:
                logger.warn(
                    f"Both `max_new_tokens` (={generation_config.max_new_tokens}) and `max_length`(="
                    f"{generation_config.max_length}) seem to have been set. `max_new_tokens` will take precedence. "
                    "Please refer to the documentation for more information. "
                    "(https://huggingface.co/docs/transformers/main/en/main_classes/text_generation)",
                    UserWarning,
                )
```
In my understanding, doing as you suggested would make this line equivalent to 1+1, as `max_new_tokens=input_ids.shape[1]` (equal to 1) and `input_ids_seq_length = input_ids.shape[-1]` (equal to 1)

```
generation_config.max_length = generation_config.max_new_tokens + input_ids_seq_length
```<|||||>@ChrisSpraaklab inside generate, in encoder-decoder models like T5, `input_ids` is related to the decoder input ids. They are not the same as the `input_ids` you feed to `.generate()`, which will be used inside the encoder. Sadly, because `.generate()` is used with many types of models, we have this naming clash :) 

Have you tried running
```py
from transformers import AutoTokenizer, T5ForConditionalGeneration, GenerationConfig

tokenizer = AutoTokenizer.from_pretrained("t5-small")
model = T5ForConditionalGeneration.from_pretrained("t5-small")

input_ids = tokenizer("summarize: My friends are cool but they eat too many carbs.", return_tensors="pt").input_ids
outputs = model.generate(input_ids, max_new_tokens=input_ids.shape[1])
print(tokenizer.decode(outputs[0], skip_special_tokens=True))
```
?<|||||>Thanks! Your solution does indeed produce the result I was looking for. I was just quite confused about the naming convention and documentation around max_new_tokens. I was under the impression that its value would be added to the length of in the input of the encoder, not the decoder. However, I now understand why it doesn't behave as I expected it to. <|||||>So... despite that we input a token sequence `input_ids` in the `generate()` function, the length of this is irrelevant in the encoder-decoder model, and the `max_new_tokens` in `generate()` only refers to the length of the decoder input, which, because of BOS, is [always 1](https://github.com/huggingface/transformers/blob/main/src/transformers/generation/utils.py#L1274) in our case.  Yes, this is somewhat confusing indeed. 

Are there ways to motivate `generate()` to be more concise, but still run until EOS is generated, e.g., by setting a prior on the EOS? <|||||>Hey @davidavdav -- yeah, you can try using Beam Search (i.e. `num_beams>1`) and pass a NEGATIVE [`length_penalty`](https://huggingface.co/docs/transformers/main/en/main_classes/text_generation#transformers.GenerationConfig.length_penalty). This will nudge the output towards shorter outputs!<|||||>BTW, if you come across better variable names, by all means, please suggest them :) We have so many features on our to-do list (including better docs) that every little help is precious!<|||||>Ah thanks, @gante---I do appreciate the difficulty of choosing sensible parameter/variable names, the number of times I am refactoring names back and forth in my own code is quite scary!<|||||>This issue has been automatically marked as stale because it has not had recent activity. If you think this still needs to be addressed please comment on this thread.

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