<p dir="auto">Hi! While installing <code class="notranslate">jaxlib</code> from sources on macos 11.2.2. by following docs the installation fails with <code class="notranslate">ld: 2 duplicate symbols</code> error that points to output in <code class="notranslate">bazel-out/</code>. The log below is taken from rerunning <code class="notranslate">python3 build/build.py</code> (fails with same error). Thank you for any tips what I can be missing!</p>
<p dir="auto">Following the <code class="notranslate">install from sources instructions</code>:</p>
<ol dir="auto">
<li><code class="notranslate">git clone https://github.com/google/jax; cd jax</code></li>
<li>running installation (without cuda): <code class="notranslate">python3 build/build.py</code></li>
</ol>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="$ python3 build/build.py

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Bazel binary path: ./bazel-3.7.2-darwin-x86_64
Python binary path: /usr/local/opt/python@3.8/bin/python3.8
Python version: 3.8
MKL-DNN enabled: yes
Target CPU features: release
CUDA enabled: no
ROCm enabled: no

Building XLA and installing it in the jaxlib source tree...
./bazel-3.7.2-darwin-x86_64 run --verbose_failures=true --config=short_logs --config=avx_posix --config=mkl_open_source_only :build_wheel -- --output_path=/Users/mateusz/PycharmProjects/jax/dist
INFO: Options provided by the client:
  Inherited 'common' options: --isatty=0 --terminal_columns=80
INFO: Reading rc options for 'run' from /Users/mateusz/PycharmProjects/jax/.bazelrc:
  Inherited 'common' options: --experimental_repo_remote_exec
INFO: Reading rc options for 'run' from /Users/mateusz/PycharmProjects/jax/.bazelrc:
  Inherited 'build' options: --repo_env PYTHON_BIN_PATH=/usr/local/opt/python@3.8/bin/python3.8 --action_env=PYENV_ROOT --python_path=/usr/local/opt/python@3.8/bin/python3.8 --repo_env TF_NEED_CUDA=0 --action_env TF_CUDA_COMPUTE_CAPABILITIES=3.5,5.2,6.0,6.1,7.0 --repo_env TF_NEED_ROCM=0 --action_env TF_ROCM_AMDGPU_TARGETS=gfx803,gfx900,gfx906,gfx1010 --distinct_host_configuration=false -c opt --apple_platform_type=macos --macos_minimum_os=10.9 --announce_rc --define open_source_build=true --define=no_kafka_support=true --define=no_ignite_support=true --define=grpc_no_ares=true --spawn_strategy=standalone --strategy=Genrule=standalone --enable_platform_specific_config --define=with_tpu_support=true
INFO: Found applicable config definition build:short_logs in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --output_filter=DONT_MATCH_ANYTHING
INFO: Found applicable config definition build:avx_posix in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --copt=-mavx --host_copt=-mavx
INFO: Found applicable config definition build:mkl_open_source_only in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --define=tensorflow_mkldnn_contraction_kernel=1
INFO: Found applicable config definition build:macos in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --config=posix
INFO: Found applicable config definition build:posix in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --copt=-Wno-sign-compare --define=no_aws_support=true --define=no_gcp_support=true --define=no_hdfs_support=true --cxxopt=-std=c++14 --host_cxxopt=-std=c++14
Loading:
Loading: 0 packages loaded
Analyzing: target //build:build_wheel (0 packages loaded, 0 targets configured)
INFO: Analyzed target //build:build_wheel (0 packages loaded, 0 targets configured).
INFO: Found 1 target...
[0 / 2] [Prepa] BazelWorkspaceStatusAction stable-status.txt
[1 / 2] Linking external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension.so; 1s local
ERROR: /private/var/tmp/_bazel_mateusz/b6eb44f2f011bbc7a8c2a6afe83ceb88/external/org_tensorflow/tensorflow/compiler/xla/python/BUILD:496:17: Linking of rule '@org_tensorflow//tensorflow/compiler/xla/python:xla_extension.so' failed (Exit 1): cc_wrapper.sh failed: error executing command
  (cd /private/var/tmp/_bazel_mateusz/b6eb44f2f011bbc7a8c2a6afe83ceb88/execroot/__main__ &amp;&amp; \
  exec env - \
    PATH=/usr/local/opt/python@3.8/bin:/Users/mateusz/.jenv/shims:/Users/mateusz/.jenv/bin:/usr/local/sbin:/usr/local/texlive/2016basic/bin/x86_64-darwin:/Users/mateusz/.cargo/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin \
    PWD=/proc/self/cwd \
    TF_CUDA_COMPUTE_CAPABILITIES=3.5,5.2,6.0,6.1,7.0 \
    TF_ROCM_AMDGPU_TARGETS=gfx803,gfx900,gfx906,gfx1010 \
  external/local_config_cc/cc_wrapper.sh -shared -o bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension.so bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/_objs/xla_extension.so/xla.pic.o bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libdlpack.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpmap_lib.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libjax_jit.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libops.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/liblu_decomposition.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libqr.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libself_adjoint_eig.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libsorting.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libsvd.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libprofiler.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/cpu/libhost_tracer.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/cpu/libhost_tracer_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libparse_annotation.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/tpu/libtpu_tracer.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/rpc/libprofiler_server_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/rpc/libprofiler_service_impl.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_session_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_factory_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_lock.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/convert/libpost_process_single_host_xplane.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libderived_timeline.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libgroup_events.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_schema.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libtf_op_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_builder.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_visitor.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprofiler_service_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprofiler_service_monitor_result_proto_cc_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpytree.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpy_traceback.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/liboutfeed_receiver_py.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/liboutfeed_receiver.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libxla_compiler.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpy_client.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libtraceback.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpython_ref_manager.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprotos_all_cc_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libtypes.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/pjrt/libcpu_device.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_compiler.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libbuffer_info_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libconv_canonicalization.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_executable.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libxla_debug_info_manager.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_instruction_fusion.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libinstruction_fusion.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_layout_assignment.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_function.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libparallel_loop_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libalias_analysis.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libbuffer_assignment_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libparallel_task_assignment.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libdot_op_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libmlir_emitter.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/xla/libhlo_utils.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libinfer_fusibility_op_interface.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libconvert_op_folder.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/liblhlo.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo_ops_base_enums.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo_ops_base_structs.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libTargetLLVMIR.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMAVX512ToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMArmNeonToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMArmSVEToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libOpenMPToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libROCDLToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libTranslation.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libtiled_dot_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_emission_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libshape_partition.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libdynamic_update_slice_util.pic.a 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bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libloop_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libllvm_loop.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libir_array.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libsimple_orc_jit.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcompiler_functor.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libllvm_ir_runtime.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libvector_support_library.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libmath_ops.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/liborc_jit_memory_mapper.pic.a 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bazel-out/darwin-opt/bin/external/llvm-project/llvm/libRuntimeDyld.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libtarget_machine_features.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libAffineTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libAsyncTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libComplexToLLVM.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libSCFToOpenMP.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libTosaToLinalg.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUToGPURuntimeTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libAsyncToLLVM.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libNVVMToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libNVPTXCodeGen.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libIPO.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libIRReader.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libLinker.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libNVPTXDesc.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libNVPTXInfo.pic.a bazel-out/darwin-opt/bin/external/llvm-project/llvm/libVectorize.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUToNVVMTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUToROCDLTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUCommonTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUToSPIRV.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libSCFToSPIRV.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libGPUToVulkanTransforms.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libSPIRVSerialization.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libSPIRVBinaryUtils.pic.a 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bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libstr_format_internal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libstrings.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libinternal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libbase.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libdynamic_annotations.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libspinlock_wait.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libthrow_delegate.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libraw_logging_internal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/liblog_severity.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/numeric/libint128.pic.a -Wl,-rpath,@loader_path/,-rpath,@loader_path/..,-rpath,@loader_path/../..,-rpath,@loader_path/../../.. -Wl,-rename_section,__TEXT,text_env,__TEXT,__text -Wl,-w -Wl,-exported_symbols_list,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension-exported-symbols.lds -lm -lpthread -framework IOKit -ldl -ldl -lm -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -framework CoreFoundation -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -ldl -lpthread -lm -pthread -pthread -lm -lpthread -lm -lpthread -lm -pthread -undefined dynamic_lookup -headerpad_max_install_names -lstdc++ -lm)
Execution platform: @local_execution_config_platform//:platform
duplicate symbol 'tensorflow::tpu::InitializeTpuLibrary(void*)' in:
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo(tpu_api_dlsym_initializer.pic.o)
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_executor_dlsym_initializer.pic.lo(tpu_executor_dlsym_initializer.pic.o)
duplicate symbol 'tensorflow::tpu::FindAndLoadTpuLibrary()' in:
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo(tpu_api_dlsym_initializer.pic.o)
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_executor_dlsym_initializer.pic.lo(tpu_executor_dlsym_initializer.pic.o)
ld: 2 duplicate symbols for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Target //build:build_wheel failed to build
INFO: Elapsed time: 3.424s, Critical Path: 2.82s
INFO: 2 processes: 2 internal.
FAILED: Build did NOT complete successfully
ERROR: Build failed. Not running target
FAILED: Build did NOT complete successfully
Traceback (most recent call last):
  File &quot;build/build.py&quot;, line 516, in &lt;module&gt;
    main()
  File &quot;build/build.py&quot;, line 511, in main
    shell(command)
  File &quot;build/build.py&quot;, line 51, in shell
    output = subprocess.check_output(cmd)
  File &quot;/usr/local/Cellar/python@3.8/3.8.8/Frameworks/Python.framework/Versions/3.8/lib/python3.8/subprocess.py&quot;, line 415, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
  File &quot;/usr/local/Cellar/python@3.8/3.8.8/Frameworks/Python.framework/Versions/3.8/lib/python3.8/subprocess.py&quot;, line 516, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./bazel-3.7.2-darwin-x86_64', 'run', '--verbose_failures=true', '--config=short_logs', '--config=avx_posix', '--config=mkl_open_source_only', ':build_wheel', '--', '--output_path=/Users/mateusz/PycharmProjects/jax/dist']' returned non-zero exit status 1."><pre class="notranslate"><code class="notranslate">$ python3 build/build.py

     _   _  __  __
    | | / \ \ \/ /
 _  | |/ _ \ \  /
| |_| / ___ \/  \
 \___/_/   \/_/\_\


Bazel binary path: ./bazel-3.7.2-darwin-x86_64
Python binary path: /usr/local/opt/python@3.8/bin/python3.8
Python version: 3.8
MKL-DNN enabled: yes
Target CPU features: release
CUDA enabled: no
ROCm enabled: no

Building XLA and installing it in the jaxlib source tree...
./bazel-3.7.2-darwin-x86_64 run --verbose_failures=true --config=short_logs --config=avx_posix --config=mkl_open_source_only :build_wheel -- --output_path=/Users/mateusz/PycharmProjects/jax/dist
INFO: Options provided by the client:
  Inherited 'common' options: --isatty=0 --terminal_columns=80
INFO: Reading rc options for 'run' from /Users/mateusz/PycharmProjects/jax/.bazelrc:
  Inherited 'common' options: --experimental_repo_remote_exec
INFO: Reading rc options for 'run' from /Users/mateusz/PycharmProjects/jax/.bazelrc:
  Inherited 'build' options: --repo_env PYTHON_BIN_PATH=/usr/local/opt/python@3.8/bin/python3.8 --action_env=PYENV_ROOT --python_path=/usr/local/opt/python@3.8/bin/python3.8 --repo_env TF_NEED_CUDA=0 --action_env TF_CUDA_COMPUTE_CAPABILITIES=3.5,5.2,6.0,6.1,7.0 --repo_env TF_NEED_ROCM=0 --action_env TF_ROCM_AMDGPU_TARGETS=gfx803,gfx900,gfx906,gfx1010 --distinct_host_configuration=false -c opt --apple_platform_type=macos --macos_minimum_os=10.9 --announce_rc --define open_source_build=true --define=no_kafka_support=true --define=no_ignite_support=true --define=grpc_no_ares=true --spawn_strategy=standalone --strategy=Genrule=standalone --enable_platform_specific_config --define=with_tpu_support=true
INFO: Found applicable config definition build:short_logs in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --output_filter=DONT_MATCH_ANYTHING
INFO: Found applicable config definition build:avx_posix in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --copt=-mavx --host_copt=-mavx
INFO: Found applicable config definition build:mkl_open_source_only in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --define=tensorflow_mkldnn_contraction_kernel=1
INFO: Found applicable config definition build:macos in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --config=posix
INFO: Found applicable config definition build:posix in file /Users/mateusz/PycharmProjects/jax/.bazelrc: --copt=-Wno-sign-compare --define=no_aws_support=true --define=no_gcp_support=true --define=no_hdfs_support=true --cxxopt=-std=c++14 --host_cxxopt=-std=c++14
Loading:
Loading: 0 packages loaded
Analyzing: target //build:build_wheel (0 packages loaded, 0 targets configured)
INFO: Analyzed target //build:build_wheel (0 packages loaded, 0 targets configured).
INFO: Found 1 target...
[0 / 2] [Prepa] BazelWorkspaceStatusAction stable-status.txt
[1 / 2] Linking external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension.so; 1s local
ERROR: /private/var/tmp/_bazel_mateusz/b6eb44f2f011bbc7a8c2a6afe83ceb88/external/org_tensorflow/tensorflow/compiler/xla/python/BUILD:496:17: Linking of rule '@org_tensorflow//tensorflow/compiler/xla/python:xla_extension.so' failed (Exit 1): cc_wrapper.sh failed: error executing command
  (cd /private/var/tmp/_bazel_mateusz/b6eb44f2f011bbc7a8c2a6afe83ceb88/execroot/__main__ &amp;&amp; \
  exec env - \
    PATH=/usr/local/opt/python@3.8/bin:/Users/mateusz/.jenv/shims:/Users/mateusz/.jenv/bin:/usr/local/sbin:/usr/local/texlive/2016basic/bin/x86_64-darwin:/Users/mateusz/.cargo/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin \
    PWD=/proc/self/cwd \
    TF_CUDA_COMPUTE_CAPABILITIES=3.5,5.2,6.0,6.1,7.0 \
    TF_ROCM_AMDGPU_TARGETS=gfx803,gfx900,gfx906,gfx1010 \
  external/local_config_cc/cc_wrapper.sh -shared -o bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension.so bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/_objs/xla_extension.so/xla.pic.o bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libdlpack.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpmap_lib.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libjax_jit.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libops.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/liblu_decomposition.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libqr.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libself_adjoint_eig.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libsorting.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/client/lib/libsvd.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libprofiler.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/cpu/libhost_tracer.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/cpu/libhost_tracer_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libparse_annotation.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/internal/tpu/libtpu_tracer.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/rpc/libprofiler_server_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/rpc/libprofiler_service_impl.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_session_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_factory_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/lib/libprofiler_lock.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/convert/libpost_process_single_host_xplane.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libderived_timeline.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libgroup_events.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_schema.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libtf_op_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_builder.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/utils/libxplane_visitor.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprofiler_service_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprofiler_service_monitor_result_proto_cc_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpytree.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpy_traceback.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/liboutfeed_receiver_py.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/liboutfeed_receiver.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libxla_compiler.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpy_client.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libtraceback.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libpython_ref_manager.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprotos_all_cc_impl.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/libtypes.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/pjrt/libcpu_device.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_compiler.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libbuffer_info_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libconv_canonicalization.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_executable.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libxla_debug_info_manager.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_instruction_fusion.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libinstruction_fusion.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libcpu_layout_assignment.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_function.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libparallel_loop_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libalias_analysis.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libbuffer_assignment_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libparallel_task_assignment.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libdot_op_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libmlir_emitter.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/xla/libhlo_utils.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libinfer_fusibility_op_interface.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libconvert_op_folder.pic.a -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/liblhlo.pic.lo bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo_ops_base_enums.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/mlir/hlo/libhlo_ops_base_structs.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libTargetLLVMIR.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMAVX512ToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMArmNeonToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMArmSVEToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libLLVMToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libOpenMPToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libROCDLToLLVMIRTranslation.pic.a bazel-out/darwin-opt/bin/external/llvm-project/mlir/libTranslation.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libtiled_dot_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libir_emission_utils.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/cpu/libshape_partition.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libdynamic_update_slice_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libfused_ir_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libtuple_ops.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libfusion_node_indexing_evaluation.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/libelemental_ir_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/gpu/libparallel_loop_emitter.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/gpu/liblaunch_dimensions.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/gpu/libtarget_util.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/service/llvm_ir/libkernel_support_library.pic.a 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-Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/protobuf/liberror_codes_proto_impl_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libapi_def_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libcost_graph_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libdevice_attributes_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libgraph_transfer_info_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libkernel_def_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/liblog_memory_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libmodel_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libdataset_options_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libreader_base_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libremote_fused_graph_execute_info_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libgraph_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libfunction_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libnode_def_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libop_def_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libattr_value_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libstep_stats_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libsummary_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libtensor_description_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/liballocation_description_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libtensor_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libresource_handle_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libtensor_shape_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libtensor_slice_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libtypes_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libvariable_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/framework/libversions_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/protobuf/libxplane_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/profiler/libprofiler_options_proto_cc_impl.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/com_google_protobuf/libprotobuf.pic.lo -Wl,-force_load,bazel-out/darwin-opt/bin/external/com_google_protobuf/libprotobuf_lite.pic.lo bazel-out/darwin-opt/bin/external/zlib/libzlib.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/python/lib/core/libbfloat16_lib.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/python/lib/core/libnumpy_lib.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/platform/default/liblogging.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/platform/default/libenv_time.pic.a bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/platform/default/libmutex.pic.a bazel-out/darwin-opt/bin/external/nsync/libnsync_cpp.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libcord.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libstr_format_internal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libstrings.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/strings/libinternal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libbase.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libdynamic_annotations.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libspinlock_wait.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libthrow_delegate.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/libraw_logging_internal.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/base/liblog_severity.pic.a bazel-out/darwin-opt/bin/external/com_google_absl/absl/numeric/libint128.pic.a -Wl,-rpath,@loader_path/,-rpath,@loader_path/..,-rpath,@loader_path/../..,-rpath,@loader_path/../../.. -Wl,-rename_section,__TEXT,text_env,__TEXT,__text -Wl,-w -Wl,-exported_symbols_list,bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/compiler/xla/python/xla_extension-exported-symbols.lds -lm -lpthread -framework IOKit -ldl -ldl -lm -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -framework CoreFoundation -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -pthread -ldl -lpthread -lm -pthread -pthread -lm -lpthread -lm -lpthread -lm -pthread -undefined dynamic_lookup -headerpad_max_install_names -lstdc++ -lm)
Execution platform: @local_execution_config_platform//:platform
duplicate symbol 'tensorflow::tpu::InitializeTpuLibrary(void*)' in:
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo(tpu_api_dlsym_initializer.pic.o)
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_executor_dlsym_initializer.pic.lo(tpu_executor_dlsym_initializer.pic.o)
duplicate symbol 'tensorflow::tpu::FindAndLoadTpuLibrary()' in:
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_api_dlsym_initializer.pic.lo(tpu_api_dlsym_initializer.pic.o)
    bazel-out/darwin-opt/bin/external/org_tensorflow/tensorflow/core/tpu/libtpu_executor_dlsym_initializer.pic.lo(tpu_executor_dlsym_initializer.pic.o)
ld: 2 duplicate symbols for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
Target //build:build_wheel failed to build
INFO: Elapsed time: 3.424s, Critical Path: 2.82s
INFO: 2 processes: 2 internal.
FAILED: Build did NOT complete successfully
ERROR: Build failed. Not running target
FAILED: Build did NOT complete successfully
Traceback (most recent call last):
  File "build/build.py", line 516, in &lt;module&gt;
    main()
  File "build/build.py", line 511, in main
    shell(command)
  File "build/build.py", line 51, in shell
    output = subprocess.check_output(cmd)
  File "/usr/local/Cellar/python@3.8/3.8.8/Frameworks/Python.framework/Versions/3.8/lib/python3.8/subprocess.py", line 415, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
  File "/usr/local/Cellar/python@3.8/3.8.8/Frameworks/Python.framework/Versions/3.8/lib/python3.8/subprocess.py", line 516, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['./bazel-3.7.2-darwin-x86_64', 'run', '--verbose_failures=true', '--config=short_logs', '--config=avx_posix', '--config=mkl_open_source_only', ':build_wheel', '--', '--output_path=/Users/mateusz/PycharmProjects/jax/dist']' returned non-zero exit status 1.
</code></pre></div>
<h3 dir="auto">Description</h3>
<p dir="auto">The difference operation between two <code class="notranslate">BCOO</code> sparse matrices implicitly removes zeros. The behaviour is different from the one observed for the addition. Consider the example below.</p>
<div class="highlight highlight-source-python notranslate position-relative overflow-auto" dir="auto" data-snippet-clipboard-copy-content="import jax.experimental.sparse as jsp
import jax.numpy as jnp

a = jsp.BCOO((jnp.array([1.0]), jnp.array([[0, 0]])), shape=(3, 3))
b_values = jnp.array([0.0, 1.0, 0.0])
b_indices = jnp.array([[0, 0], [1, 1], [2, 2]])
b = jsp.BCOO((b_values, b_indices), shape=(3, 3))

print(&quot;Difference\n&quot;, (a - b).indices)
print(&quot;Addition\n&quot;, (a + b).indices)"><pre class="notranslate"><span class="pl-k">import</span> <span class="pl-s1">jax</span>.<span class="pl-s1">experimental</span>.<span class="pl-s1">sparse</span> <span class="pl-k">as</span> <span class="pl-s1">jsp</span>
<span class="pl-k">import</span> <span class="pl-s1">jax</span>.<span class="pl-s1">numpy</span> <span class="pl-k">as</span> <span class="pl-s1">jnp</span>

<span class="pl-s1">a</span> <span class="pl-c1">=</span> <span class="pl-s1">jsp</span>.<span class="pl-v">BCOO</span>((<span class="pl-s1">jnp</span>.<span class="pl-en">array</span>([<span class="pl-c1">1.0</span>]), <span class="pl-s1">jnp</span>.<span class="pl-en">array</span>([[<span class="pl-c1">0</span>, <span class="pl-c1">0</span>]])), <span class="pl-s1">shape</span><span class="pl-c1">=</span>(<span class="pl-c1">3</span>, <span class="pl-c1">3</span>))
<span class="pl-s1">b_values</span> <span class="pl-c1">=</span> <span class="pl-s1">jnp</span>.<span class="pl-en">array</span>([<span class="pl-c1">0.0</span>, <span class="pl-c1">1.0</span>, <span class="pl-c1">0.0</span>])
<span class="pl-s1">b_indices</span> <span class="pl-c1">=</span> <span class="pl-s1">jnp</span>.<span class="pl-en">array</span>([[<span class="pl-c1">0</span>, <span class="pl-c1">0</span>], [<span class="pl-c1">1</span>, <span class="pl-c1">1</span>], [<span class="pl-c1">2</span>, <span class="pl-c1">2</span>]])
<span class="pl-s1">b</span> <span class="pl-c1">=</span> <span class="pl-s1">jsp</span>.<span class="pl-v">BCOO</span>((<span class="pl-s1">b_values</span>, <span class="pl-s1">b_indices</span>), <span class="pl-s1">shape</span><span class="pl-c1">=</span>(<span class="pl-c1">3</span>, <span class="pl-c1">3</span>))

<span class="pl-en">print</span>(<span class="pl-s">"Difference<span class="pl-cce">\n</span>"</span>, (<span class="pl-s1">a</span> <span class="pl-c1">-</span> <span class="pl-s1">b</span>).<span class="pl-s1">indices</span>)
<span class="pl-en">print</span>(<span class="pl-s">"Addition<span class="pl-cce">\n</span>"</span>, (<span class="pl-s1">a</span> <span class="pl-c1">+</span> <span class="pl-s1">b</span>).<span class="pl-s1">indices</span>)</pre></div>
<p dir="auto">The output is</p>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="Difference
 [[0 0]
 [1 1]
 [3 3]
 [3 3]]
Addition
 [[0 0]
 [0 0]
 [1 1]
 [2 2]]"><pre class="notranslate"><code class="notranslate">Difference
 [[0 0]
 [1 1]
 [3 3]
 [3 3]]
Addition
 [[0 0]
 [0 0]
 [1 1]
 [2 2]]
</code></pre></div>
<p dir="auto">As you can see, in the difference operation the indices associated to null values in <code class="notranslate">a</code> or <code class="notranslate">b</code> have disappeared and they have been replaced with the out-of-bounds index <code class="notranslate">[3,3]</code>.</p>
<p dir="auto">The expected behaviour can be obtained using <code class="notranslate">a + (-1)*b</code>.</p>
<h3 dir="auto">What jax/jaxlib version are you using?</h3>
<p dir="auto">jax v0.3.25, jaxlib v.0.3.25</p>
<h3 dir="auto">Which accelerator(s) are you using?</h3>
<p dir="auto">CPU/GPU</p>
<h3 dir="auto">Additional system info</h3>
<p dir="auto">Python 3.10.8, ArchLinux</p>
<h3 dir="auto">NVIDIA GPU info</h3>
<p dir="auto">NVIDIA-SMI 520.56.06    Driver Version: 520.56.06    CUDA Version: 11.8</p>