<p dir="auto"><em>Original ticket <a href="http://projects.scipy.org/numpy/ticket/1522" rel="nofollow">http://projects.scipy.org/numpy/ticket/1522</a> on 2010-06-27 by trac user glub, assigned to unknown.</em></p>
<p dir="auto">I am consistently getting segfaults when I call any() on a particular array of 42364 elements.  I will try to attach the array as a text file.  There doesn't appear to be anything interesting about the array except that it does not have any zeros and appears to have a lot of smallish, duplicate values.  I got the same segfault in 1.3.0, 1.4.1, and r8464 from svn:</p>
<p dir="auto">Program received signal SIGSEGV, Segmentation fault.<br>
0x00007ffff03eac2f in PyUFunc_Reduce (self=, args=, kwds=, operation=)<br>
at numpy/core/src/umath/ufunc_object.c:2785<br>
2785                        Py_XINCREF(<em>((PyObject *</em>)loop-&gt;castbuf));<br>
(gdb) bt<br>
#0  0x00007ffff03eac2f in PyUFunc_Reduce (self=, args=, kwds=, operation=)</p>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="at numpy/core/src/umath/ufunc_object.c:2785"><pre class="notranslate"><code class="notranslate">at numpy/core/src/umath/ufunc_object.c:2785
</code></pre></div>
<p dir="auto"><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="317838" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/1" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/1/hovercard" href="https://github.com/numpy/numpy/pull/1">#1</a>  PyUFunc_GenericReduction (self=, args=, kwds=, operation=)</p>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="at numpy/core/src/umath/ufunc_object.c:3352"><pre class="notranslate"><code class="notranslate">at numpy/core/src/umath/ufunc_object.c:3352
</code></pre></div>
<p dir="auto"><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="365753" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/2" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/2/hovercard" href="https://github.com/numpy/numpy/pull/2">#2</a>  0x00000035d1043db3 in PyObject_Call () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="366396" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/3" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/3/hovercard" href="https://github.com/numpy/numpy/pull/3">#3</a>  0x00007ffff065ecbe in PyArray_GenericReduceFunction (m1=, op=, axis=, rtype=, out=0x0)</p>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="at numpy/core/src/multiarray/number.c:173"><pre class="notranslate"><code class="notranslate">at numpy/core/src/multiarray/number.c:173
</code></pre></div>
<p dir="auto"><a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="368871" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/4" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/4/hovercard" href="https://github.com/numpy/numpy/pull/4">#4</a>  0x00007ffff0682aab in PyArray_Any (self=, axis=0, out=0x0) at numpy/core/src/multiarray/calculation.c:697<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="371012" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/5" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/5/hovercard" href="https://github.com/numpy/numpy/pull/5">#5</a>  0x00007ffff0682b5e in array_any (self=0xd6ae90, args=, kwds=) at numpy/core/src/multiarray/methods.c:1825<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="373712" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/6" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/6/hovercard" href="https://github.com/numpy/numpy/pull/6">#6</a>  0x00000035d10ddae6 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="374921" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/7" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/7/hovercard" href="https://github.com/numpy/numpy/pull/7">#7</a>  0x00000035d10de312 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="385452" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/8" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/8/hovercard" href="https://github.com/numpy/numpy/pull/8">#8</a>  0x00000035d10df4e9 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="395508" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/9" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/9/hovercard" href="https://github.com/numpy/numpy/pull/9">#9</a>  0x00000035d10dd897 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="401891" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/10" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/10/hovercard" href="https://github.com/numpy/numpy/pull/10">#10</a> 0x00000035d10de312 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="403627" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/11" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/11/hovercard" href="https://github.com/numpy/numpy/pull/11">#11</a> 0x00000035d10de312 in PyEval_EvalFrameEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="408914" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/12" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/12/hovercard" href="https://github.com/numpy/numpy/pull/12">#12</a> 0x00000035d10df4e9 in PyEval_EvalCodeEx () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="414487" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/13" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/13/hovercard" href="https://github.com/numpy/numpy/pull/13">#13</a> 0x00000035d10df5b2 in PyEval_EvalCode () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="415272" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/14" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/14/hovercard" href="https://github.com/numpy/numpy/pull/14">#14</a> 0x00000035d10fa52c in ?? () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="424462" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/15" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/15/hovercard" href="https://github.com/numpy/numpy/pull/15">#15</a> 0x00000035d10fa600 in PyRun_FileExFlags () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="425395" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/16" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/16/hovercard" href="https://github.com/numpy/numpy/pull/16">#16</a> 0x00000035d10fb9dc in PyRun_SimpleFileExFlags () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="429163" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/17" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/17/hovercard" href="https://github.com/numpy/numpy/pull/17">#17</a> 0x00000035d110807d in Py_Main () from /usr/lib64/libpython2.6.so.1.0<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="431565" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/18" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/18/hovercard" href="https://github.com/numpy/numpy/pull/18">#18</a> 0x00000034b341ec5d in __libc_start_main () from /lib64/libc.so.6<br>
<a class="issue-link js-issue-link" data-error-text="Failed to load title" data-id="431837" data-permission-text="Title is private" data-url="https://github.com/numpy/numpy/issues/19" data-hovercard-type="pull_request" data-hovercard-url="/numpy/numpy/pull/19/hovercard" href="https://github.com/numpy/numpy/pull/19">#19</a> 0x0000000000400649 in _start ()</p>
<p dir="auto"><em>Original ticket <a href="http://projects.scipy.org/numpy/ticket/1294" rel="nofollow">http://projects.scipy.org/numpy/ticket/1294</a> on 2009-11-09 by <a class="user-mention notranslate" data-hovercard-type="user" data-hovercard-url="/users/nilswagner01/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="https://github.com/nilswagner01">@nilswagner01</a>, assigned to unknown.</em></p>
<p dir="auto">The problem file is generated by f2py.</p>
<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clipboard-copy-content="In file included from scipy/integrate/_odepackmodule.c:6:
scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
scipy/integrate/__odepack.h:328: warning: call to function
‘lsoda_’ without a real prototype
scipy/integrate/__odepack.h:31: note: ‘lsoda_’ was
declared here
scipy/integrate/_odepackmodule.c: At top level:
scipy/integrate/multipack.h:114: warning:
‘my_make_numpy_array’ defined but not used
scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
scipy/integrate/__odepack.h:226: warning: ‘tcrit’ may be
used uninitialized in this function
scipy/integrate/__odepack.h:227: warning: ‘wa’ may be used
uninitialized in this function
/usr/bin/gfortran -Wall -Wall -shared
build/temp.linux-x86_64-2.6/scipy/integrate/_odepackmodule.o
-L/home/nwagner/src/ATLAS3.8.2/mybuild/lib -L/usr/lib64
-Lbuild/temp.linux-x86_64-2.6 -lodepack -llinpack_lite
-lmach -lptf77blas -lptcblas -latlas -lpython2.6
-lgfortran -o
build/lib.linux-x86_64-2.6/scipy/integrate/_odepack.so
building 'scipy.integrate.vode' extension
compiling C sources
C compiler: /usr/bin/gcc -fno-strict-aliasing -DNDEBUG
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector -funwind-tables
-fasynchronous-unwind-tables -g -fwrapv -fPIC

creating
build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate
compile options: '-DATLAS_INFO=&quot;\&quot;3.8.2\&quot;&quot;
-I/home/nwagner/src/ATLAS3.8.2/include
-Ibuild/src.linux-x86_64-2.6
-I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
-I/usr/include/python2.6 -c'
gcc:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: (Each undeclared identifier is reported only once
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: for each function it appears in.)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: (Each undeclared identifier is reported only once
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: for each function it appears in.)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
warning: unused variable ‘n_0’
error: Command &quot;/usr/bin/gcc -fno-strict-aliasing -DNDEBUG
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector -funwind-tables
-fasynchronous-unwind-tables -g -fwrapv -fPIC
-DATLAS_INFO=&quot;\&quot;3.8.2\&quot;&quot;
-I/home/nwagner/src/ATLAS3.8.2/include
-Ibuild/src.linux-x86_64-2.6
-I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
-I/usr/include/python2.6 -c
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c -o
build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.o&quot;
failed with exit status 1"><pre class="notranslate"><code class="notranslate">In file included from scipy/integrate/_odepackmodule.c:6:
scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
scipy/integrate/__odepack.h:328: warning: call to function
‘lsoda_’ without a real prototype
scipy/integrate/__odepack.h:31: note: ‘lsoda_’ was
declared here
scipy/integrate/_odepackmodule.c: At top level:
scipy/integrate/multipack.h:114: warning:
‘my_make_numpy_array’ defined but not used
scipy/integrate/__odepack.h: In function ‘odepack_odeint’:
scipy/integrate/__odepack.h:226: warning: ‘tcrit’ may be
used uninitialized in this function
scipy/integrate/__odepack.h:227: warning: ‘wa’ may be used
uninitialized in this function
/usr/bin/gfortran -Wall -Wall -shared
build/temp.linux-x86_64-2.6/scipy/integrate/_odepackmodule.o
-L/home/nwagner/src/ATLAS3.8.2/mybuild/lib -L/usr/lib64
-Lbuild/temp.linux-x86_64-2.6 -lodepack -llinpack_lite
-lmach -lptf77blas -lptcblas -latlas -lpython2.6
-lgfortran -o
build/lib.linux-x86_64-2.6/scipy/integrate/_odepack.so
building 'scipy.integrate.vode' extension
compiling C sources
C compiler: /usr/bin/gcc -fno-strict-aliasing -DNDEBUG
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector -funwind-tables
-fasynchronous-unwind-tables -g -fwrapv -fPIC

creating
build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate
compile options: '-DATLAS_INFO="\"3.8.2\""
-I/home/nwagner/src/ATLAS3.8.2/include
-Ibuild/src.linux-x86_64-2.6
-I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
-I/usr/include/python2.6 -c'
gcc:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: (Each undeclared identifier is reported only once
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: for each function it appears in.)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: (Each undeclared identifier is reported only once
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: for each function it appears in.)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:376:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:377:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:335:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:334:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:332:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_dvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:508:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:509:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:467:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:466:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:465:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:464:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:463:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:461:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_f_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:636:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:637:
error: ‘ydot_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:595:
warning: unused variable ‘ipar_5’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:594:
warning: unused variable ‘rpar_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:592:
warning: unused variable ‘n_0’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:
In function ‘cb_jac_in_zvode__user__routines’:
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘y_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:768:
error: ‘n’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘jac_Dims’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
error: ‘nrowpd’ undeclared (first use in this function)
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:769:
warning: left-hand operand of comma expression has no
effect
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:727:
warning: unused variable ‘ipar_8’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:726:
warning: unused variable ‘rpar_7’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:725:
warning: unused variable ‘nrowpd_6’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:724:
warning: unused variable ‘mu_4’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:723:
warning: unused variable ‘ml_3’
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c:721:
warning: unused variable ‘n_0’
error: Command "/usr/bin/gcc -fno-strict-aliasing -DNDEBUG
-fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2
-fstack-protector -funwind-tables
-fasynchronous-unwind-tables -g -fwrapv -fPIC
-DATLAS_INFO="\"3.8.2\""
-I/home/nwagner/src/ATLAS3.8.2/include
-Ibuild/src.linux-x86_64-2.6
-I/home/nwagner/local/lib64/python2.6/site-packages/numpy/core/include
-I/usr/include/python2.6 -c
build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.c -o
build/temp.linux-x86_64-2.6/build/src.linux-x86_64-2.6/scipy/integrate/vodemodule.o"
failed with exit status 1
</code></pre></div>