About coordinates
Hi Mahmood Lab team,
Thank you for your excellent work . we’ve been using your models regularly for our pathology image research.
I have a question regarding the UNI2 features you provided. You mentioned using 256x256 patches at 20X magnification, but upon checking the coordinates, they appear to be in 512x512 units. Are the 'coords' included in the h5 file based on 40X magnification?
Thank you in advance!
I have also noticed this issue. The provided features seem to be 512×512. For the same WSI, the number of patches is much smaller compared to 256×256.
And the pre-trained features seem to have issues. Some patches are missing, and the coordinates are also lost. For example, in TCGA-COAD, the part coordinates for TCGA-CA-5254-01Z-00-DX1.cd986205-1db0-457b-9a28-75bed56376cb are missing.