transformers pytorch tensorboard bert token-classification generated_from_trainer dataset:ncbi_disease model-index autotrain_compatible endpoints_compatible region:us
---
datasets:
- ncbi_disease
metrics:
- precision
- recall
- f1
- accuracy
tags:
- generated_from_trainer
model-index:
- name: biobert-base-cased-v1.2_ncbi_disease-sm-first-ner
  results:
  - task:
      type: token-classification
      name: Token Classification
    dataset:
      name: ncbi_disease
      type: ncbi_disease
      args: ncbi_disease
    metrics:
    - type: precision
      value: 0.8522139160437032
      name: Precision
    - type: recall
      value: 0.8826682549136391
      name: Recall
    - type: f1
      value: 0.8671737858396723
      name: F1
    - type: accuracy
      value: 0.9826972482743678
      name: Accuracy
---

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# biobert-base-cased-v1.2_ncbi_disease-sm-first-ner

This model is a fine-tuned version of [dmis-lab/biobert-base-cased-v1.2](https://huggingface.co/dmis-lab/biobert-base-cased-v1.2) on the ncbi_disease dataset.
It achieves the following results on the evaluation set:
- Loss: 0.0865
- Precision: 0.8522
- Recall: 0.8827
- F1: 0.8672
- Accuracy: 0.9827

## Model description

More information needed

## Intended uses & limitations

More information needed

## Training and evaluation data

More information needed

## Training procedure

### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 4
- eval_batch_size: 4
- seed: 42
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: linear
- lr_scheduler_warmup_ratio: 0.1
- num_epochs: 3

### Training results

| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
| 0.0858        | 1.0   | 1359 | 0.0985          | 0.7929    | 0.8005 | 0.7967 | 0.9730   |
| 0.042         | 2.0   | 2718 | 0.0748          | 0.8449    | 0.8856 | 0.8648 | 0.9820   |
| 0.0124        | 3.0   | 4077 | 0.0865          | 0.8522    | 0.8827 | 0.8672 | 0.9827   |


### Framework versions

- Transformers 4.18.0
- Pytorch 1.10.2+cu102
- Datasets 2.3.2
- Tokenizers 0.12.1
