Multi-Worm Behaviour Tracker
This project is maintained by ver228
conda create -n tierpsy conda activate tierpsy #[Windows] source activate tierpsy #[OSX or Linux]
conda install tierpsy -c conda-forge
tierpsy_gui
Do not forget to activate the enviroment every time you start a new terminal session.
On OSX the first time
tierpsy_gui is intialized it will create a file in the Desktop called tierpsy_gui.command. By double-cliking on this file tierpsy can be started without having to open a terminal.
conda, you may get an error while the package
conda-forge::cloudpickle...is installed, stating that
python3.6couldn’t be found. In this case, make sure to first install python 3.6, and then tierpsy, by executing:
conda install -c conda-forge python=3.6 conda install -c conda-forge tierpsy
opencvversions available through
conda. If you have problems reading video files or encounter error related with
import cv2, then you can try to install opencv using pip as:
pip install opencv-python-headless
or specify the
opencv version via:
conda install opencv=3.4.2 #[tested on MacOS]
ffmpegversion. Activate the tierpsy enviroment and use the conda-forge channel instead as:
conda install -c conda-forge ffmpeg
Install a C compiler compatible with cython. In Windows, you can use Visual C++ 2015 Build Tools. In OSX, if you install homebrew it will setup the C compiler without the need to download XCode from the appstore.
git clone cd tierpsy-tracker conda create -n tierpsy #[optional] source activate tierpsy #[optional] conda install --file requirements.txt pip install -e .
The script
TierpsyTrackerConsole.py was deprecated in favor of using the command
tierpsy_process. Type
tierpsy_process -h for help.
After installing you can run the testing scripts using the command
tierpsy_tests on the terminal. Type
tierpsy_tests -h for help. Although the script supports running multiple tests consecutively, I would recommed to run one test at the time since there is not currently a way to summarize the results of several tests.