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Geneformer

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17 contributors

History: 231 commits

Christina Theodoris

plot umap for all labels in same view

ff551ee 2 days ago

Geneformer-V1-10M
add V2 models 11 days ago
Geneformer-V2-104M
add V2 models 11 days ago
Geneformer-V2-104M_CLcancer
add V2 models 11 days ago
Geneformer-V2-316M
add V2 models 11 days ago
docs
edit docs to remove backend isp functions 13 days ago
examples
delete first version of dist multitask example 8 days ago
fine_tuned_models
add V2 models 11 days ago
geneformer
plot umap for all labels in same view 2 days ago
.gitattributes

1.27 kB

precommit formatting 11 months ago
.gitignore

3.08 kB

Add gitignore file about 2 years ago
.pre-commit-config.yaml

737 Bytes

Add pre-commit config over 1 year ago
.readthedocs.yaml

396 Bytes

update readthedocs.yaml over 1 year ago
MANIFEST.in

482 Bytes

add option for relabeling data from prior label class dict, update dict paths in manifest 6 days ago
README.md

9.06 kB

Update README.md 3 days ago
config.json

591 Bytes

update with V2 models 12 days ago
generation_config.json

90 Bytes

update with V2 models 12 days ago
model.safetensors

1.27 GB
LFS

update with V2 models 12 days ago
requirements.txt

382 Bytes

specify bitsandbites version 11 days ago
setup.py

1.09 kB

update with V2 models 12 days ago
training_args.bin
Detected Pickle imports (9)
- "transformers.training_args.TrainingArguments",
- "accelerate.utils.dataclasses.DistributedType",
- "transformers.trainer_utils.SchedulerType",
- "transformers.trainer_utils.HubStrategy",
- "torch.device",
- "accelerate.state.PartialState",
- "transformers.trainer_pt_utils.AcceleratorConfig",
- "transformers.trainer_utils.IntervalStrategy",
- "transformers.training_args.OptimizerNames"
How to fix it?
5.43 kB
LFS

update with V2 models 12 days ago