README.md

metadata

pipeline_tag: image-segmentation
tags:
  - medical
  - biology
  - clinical

vesselFM

TL;DR: VesselFM is a foundation model for universal 3D blood vessel segmentation in arbitrary imaging domains. For details, please refer to our preprint (https://arxiv.org/pdf/2411.17386) and our GitHub repo (https://github.com/bwittmann/vesselFM).

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Checkpoints

We provide the following checkpoints:

• vesselFM_base.pt: VesselFM pre-trained on our three proposed data sources (D_real, D_drand, and D_flow). This checkpoint will be automatically downloaded in vesselfm/seg/inference.py.

Citing vesselFM

If you find our work useful, please cite:

@article{wittmann2024vesselfm,
  title={vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation},
  author={Wittmann, Bastian and Wattenberg, Yannick and Amiranashvili, Tamaz and Shit, Suprosanna and Menze, Bjoern},
  journal={arXiv preprint arXiv:2411.17386},
  year={2024}
}