SaProtHub/Model-Saprot-TM-35M

Base model: westlake-repl/SaProt_35M_AF2

Task type: Protein-protein Regression

Model Details

Model Description

This model is used to predict TM score give two SA protein pairs.

Model input type

SA sequence pair

Performance

test_loss: 0.0031981547363102436

test_spearman: 0.8464066386222839

test_R2: 0.8718534111976624

test_pearson: 0.9338204860687256

LoRA config

lora_dropout: 0.0

lora_alpha: 16

target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]

modules_to_save: ["classifier"]

Training config

class: AdamW

betas: (0.9, 0.98)

weight_decay: 0.01

learning rate: 1e-4

epoch: 10

batch size: 4

precision: 16-mixed

• PEFT 0.10.0