Add Python Primer source configuration to markdown processing script
Browse files
    	
        data/scraping_scripts/process_md_files.py
    CHANGED
    
    | @@ -2,7 +2,7 @@ | |
| 2 | 
             
            Markdown Document Processor for Documentation Sources
         | 
| 3 |  | 
| 4 | 
             
            This script processes Markdown (.md) and MDX (.mdx) files from various documentation sources
         | 
| 5 | 
            -
            (such as Hugging Face Transformers, PEFT, TRL, LlamaIndex, and OpenAI Cookbook) and converts | 
| 6 | 
             
            them into a standardized JSONL format for further processing or indexing.
         | 
| 7 |  | 
| 8 | 
             
            Key features:
         | 
| @@ -18,7 +18,7 @@ Key features: | |
| 18 | 
             
            Usage:
         | 
| 19 | 
             
                python process_md_files.py <source1> <source2> ...
         | 
| 20 |  | 
| 21 | 
            -
            Where <source1>, <source2>, etc. are one or more of the predefined sources in SOURCE_CONFIGS | 
| 22 | 
             
            (e.g., 'transformers', 'llama_index', 'openai_cookbooks').
         | 
| 23 |  | 
| 24 | 
             
            The script processes all Markdown files in the specified input directories (and their subdirectories),
         | 
| @@ -28,276 +28,6 @@ files represents a single document with metadata and content. | |
| 28 | 
             
            To add or modify sources, update the SOURCE_CONFIGS dictionary at the top of the script.
         | 
| 29 | 
             
            """
         | 
| 30 |  | 
| 31 | 
            -
            # import argparse
         | 
| 32 | 
            -
            # import json
         | 
| 33 | 
            -
            # import logging
         | 
| 34 | 
            -
            # import os
         | 
| 35 | 
            -
            # import re
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| 36 | 
            -
            # import uuid
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| 37 | 
            -
            # from typing import Dict, List
         | 
| 38 | 
            -
             | 
| 39 | 
            -
            # import tiktoken
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| 40 | 
            -
             | 
| 41 | 
            -
            # logging.basicConfig(level=logging.INFO)
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| 42 | 
            -
            # logger = logging.getLogger(__name__)
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| 43 | 
            -
             | 
| 44 | 
            -
            # # Configuration for different sources
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| 45 | 
            -
            # SOURCE_CONFIGS = {
         | 
| 46 | 
            -
            #     "transformers": {
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| 47 | 
            -
            #         "base_url": "https://huggingface.co/docs/transformers/",
         | 
| 48 | 
            -
            #         "input_directory": "data/transformers_md_files",
         | 
| 49 | 
            -
            #         "output_file": "data/transformers_data.jsonl",
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| 50 | 
            -
            #         "source_name": "transformers",
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| 51 | 
            -
            #         "use_include_list": False,
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| 52 | 
            -
            #         "included_dirs": [],
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| 53 | 
            -
            #         "excluded_dirs": ["internal", "main_classes"],
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| 54 | 
            -
            #         "excluded_root_files": [],
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            -
            #         "included_root_files": [],
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| 56 | 
            -
            #         "url_extension": "",
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| 57 | 
            -
            #     },
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| 58 | 
            -
            #     "peft": {
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| 59 | 
            -
            #         "base_url": "https://huggingface.co/docs/peft/",
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| 60 | 
            -
            #         "input_directory": "data/peft_md_files",
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            -
            #         "output_file": "data/peft_data.jsonl",
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            -
            #         "source_name": "peft",
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            -
            #         "use_include_list": False,
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| 64 | 
            -
            #         "included_dirs": [],
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| 65 | 
            -
            #         "excluded_dirs": [],
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| 66 | 
            -
            #         "excluded_root_files": [],
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            -
            #         "included_root_files": [],
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            -
            #         "url_extension": "",
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            -
            #     },
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| 70 | 
            -
            #     "trl": {
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            -
            #         "base_url": "https://huggingface.co/docs/trl/",
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            -
            #         "input_directory": "data/trl_md_files",
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            -
            #         "output_file": "data/trl_data.jsonl",
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            -
            #         "source_name": "trl",
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            -
            #         "use_include_list": False,
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            -
            #         "included_dirs": [],
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            -
            #         "excluded_dirs": [],
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| 78 | 
            -
            #         "excluded_root_files": [],
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            -
            #         "included_root_files": [],
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            -
            #         "url_extension": "",
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            -
            #     },
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| 82 | 
            -
            #     "llama_index": {
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| 83 | 
            -
            #         "base_url": "https://docs.llamaindex.ai/en/stable/",
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            -
            #         "input_directory": "data/llama_index_md_files",
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| 85 | 
            -
            #         "output_file": "data/llama_index_data.jsonl",
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            -
            #         "source_name": "llama_index",
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            -
            #         "use_include_list": True,
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            -
            #         "included_dirs": [
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            -
            #             "getting_started",
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            -
            #             "understanding",
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            -
            #             "use_cases",
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            -
            #             "examples",
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            -
            #             "module_guides",
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            -
            #             "optimizing",
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            -
            #         ],
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            -
            #         "excluded_dirs": [],
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| 97 | 
            -
            #         "excluded_root_files": [],
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            -
            #         "included_root_files": ["index.md"],
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            -
            #         "url_extension": "",
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            -
            #     },
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| 101 | 
            -
            #     "openai_cookbooks": {
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            -
            #         "base_url": "https://github.com/openai/openai-cookbook/blob/main/examples/",
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            -
            #         "input_directory": "data/openai-cookbook_md_files",
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| 104 | 
            -
            #         "output_file": "data/openai_cookbooks_data.jsonl",
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            -
            #         "source_name": "openai_cookbooks",
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            -
            #         "use_include_list": False,
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            -
            #         "included_dirs": [],
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            -
            #         "excluded_dirs": [],
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            -
            #         "excluded_root_files": [],
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            -
            #         "included_root_files": [],
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            -
            #         "url_extension": ".ipynb",
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            -
            #     },
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| 113 | 
            -
            #     "langchain": {
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            -
            #         "base_url": "https://python.langchain.com/v0.2/docs/",
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            -
            #         "input_directory": "data/langchain_md_files",
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            -
            #         "output_file": "data/langchain_data.jsonl",
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            -
            #         "source_name": "langchain",
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            #         "use_include_list": True,
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            -
            #         "included_dirs": ["how_to", "versions", "turorials", "integrations"],
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            -
            #         "excluded_dirs": [],
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| 121 | 
            -
            #         "excluded_root_files": [],
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| 122 | 
            -
            #         "included_root_files": ["security.md", "concepts.mdx", "introduction.mdx"],
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| 123 | 
            -
            #         "url_extension": "",
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| 124 | 
            -
            #     },
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| 125 | 
            -
            #     "tai_blog": {
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            -
            #         "base_url": "",
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            -
            #         "input_directory": "",
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| 128 | 
            -
            #         "output_file": "data/tai_blog_data.jsonl",
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            #         "source_name": "tai_blog",
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            #         "use_include_list": False,
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            -
            #         "included_dirs": [],
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            -
            #         "excluded_dirs": [],
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| 133 | 
            -
            #         "excluded_root_files": [],
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            #         "included_root_files": [],
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            -
            #         "url_extension": "",
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            -
            #     },
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| 137 | 
            -
            # }
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| 138 | 
            -
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            -
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            # def extract_title(content: str):
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            -
            #     title_match = re.search(r"^#\s+(.+)$", content, re.MULTILINE)
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            -
            #     if title_match:
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            -
            #         return title_match.group(1).strip()
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            -
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            #     lines = content.split("\n")
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            #     for line in lines:
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            #         if line.strip():
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            #             return line.strip()
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            #     return None
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            # def generate_url(file_path: str, config: Dict) -> str:
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            #     path_without_extension = os.path.splitext(file_path)[0]
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            #     path_with_forward_slashes = path_without_extension.replace("\\", "/")
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            #     return config["base_url"] + path_with_forward_slashes + config["url_extension"]
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            # def should_include_file(file_path: str, config: Dict) -> bool:
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            #     if os.path.dirname(file_path) == "":
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            -
            #         if config["use_include_list"]:
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            #             return os.path.basename(file_path) in config["included_root_files"]
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            #         else:
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            #             return os.path.basename(file_path) not in config["excluded_root_files"]
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            -
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            #     if config["use_include_list"]:
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            #         return any(file_path.startswith(dir) for dir in config["included_dirs"])
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            #     else:
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            #         return not any(file_path.startswith(dir) for dir in config["excluded_dirs"])
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            -
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            -
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            -
            # def num_tokens_from_string(string: str, encoding_name: str) -> int:
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            #     encoding = tiktoken.get_encoding(encoding_name)
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            #     num_tokens = len(
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            #         encoding.encode(
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            #             string, disallowed_special=(encoding.special_tokens_set - {"<|endoftext|>"})
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            #         )
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            #     )
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            #     return num_tokens
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            # def remove_copyright_header(content: str) -> str:
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            #     header_pattern = re.compile(r"<!--Copyright.*?-->\s*", re.DOTALL)
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            #     cleaned_content = header_pattern.sub("", content, count=1)
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            #     return cleaned_content.strip()
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            -
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            # def process_md_files(directory: str, config: Dict) -> List[Dict]:
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            #     jsonl_data = []
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            -
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            #     for root, _, files in os.walk(directory):
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            #         for file in files:
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            #             if file.endswith(".md") or file.endswith(".mdx"):
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            #                 file_path = os.path.join(root, file)
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            #                 relative_path = os.path.relpath(file_path, directory)
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            -
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            #                 if should_include_file(relative_path, config):
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            #                     with open(file_path, "r", encoding="utf-8") as f:
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            #                         content = f.read()
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            -
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            #                     title = extract_title(content)
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            #                     token_count = num_tokens_from_string(content, "cl100k_base")
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            -
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            #                     if token_count < 100 or token_count > 200_000:
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            #                         logger.info(
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            #                             f"Skipping {relative_path} due to token count {token_count}"
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            #                         )
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            #                         continue
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            -
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            #                     cleaned_content = remove_copyright_header(content)
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            #                     json_object = {
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            #                         "tokens": token_count,
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            #                         "doc_id": str(uuid.uuid4()),
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            #                         "name": (title if title else file),
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            #                         "url": generate_url(relative_path, config),
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            #                         "retrieve_doc": (token_count <= 8000),
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            #                         "source": config["source_name"],
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            #                         "content": cleaned_content,
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            #                     }
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            -
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            #                     jsonl_data.append(json_object)
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            -
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            #     return jsonl_data
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            -
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            -
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            # def save_jsonl(data: List[Dict], output_file: str) -> None:
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            #     with open(output_file, "w", encoding="utf-8") as f:
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            #         for item in data:
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            #             json.dump(item, f, ensure_ascii=False)
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            #             f.write("\n")
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| 232 | 
            -
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| 233 | 
            -
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            # def combine_all_sources(sources: List[str]) -> None:
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            #     all_data = []
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            #     output_file = "data/all_sources_data.jsonl"
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            -
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            #     for source in sources:
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            -
            #         if source not in SOURCE_CONFIGS:
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            #             logger.error(f"Unknown source '{source}'. Skipping.")
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            #             continue
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            -
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            #         input_file = SOURCE_CONFIGS[source]["output_file"]
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            #         logger.info(f"Processing source: {source}")
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            -
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            #         with open(input_file, "r", encoding="utf-8") as f:
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            #             for line in f:
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            #                 all_data.append(json.loads(line))
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            -
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            #     logger.info(f"Total documents combined: {len(all_data)}")
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            #     save_jsonl(all_data, output_file)
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            -
            #     logger.info(f"Combined data saved to {output_file}")
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| 253 | 
            -
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| 254 | 
            -
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            # def process_source(source: str) -> None:
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            #     if source not in SOURCE_CONFIGS:
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            #         logger.error(f"Unknown source '{source}'. Skipping.")
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| 258 | 
            -
            #         return
         | 
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            -
             | 
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            -
            #     config = SOURCE_CONFIGS[source]
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            -
            #     logger.info(f"\n\nProcessing source: {source}")
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| 262 | 
            -
            #     jsonl_data = process_md_files(config["input_directory"], config)
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            -
            #     save_jsonl(jsonl_data, config["output_file"])
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| 264 | 
            -
            #     logger.info(
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            -
            #         f"Processed {len(jsonl_data)} files and saved to {config['output_file']}"
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| 266 | 
            -
            #     )
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| 267 | 
            -
             | 
| 268 | 
            -
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            -
            # def main(sources: List[str]) -> None:
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            -
            #     for source in sources:
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            -
            #         process_source(source)
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            -
             | 
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            #     if len(sources) > 1:
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            -
            #         # sources = [
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            #         #     "transformers",
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            #         #     "peft",
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            #         #     "trl",
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            #         #     "llama_index",
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            #         #     "langchain",
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            #         #     "openai_cookbooks",
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| 281 | 
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            #         #     "tai_blog",
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| 282 | 
            -
            #         # ]
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            -
            #         combine_all_sources(sources)
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            -
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            -
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            -
            # if __name__ == "__main__":
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            -
            #     parser = argparse.ArgumentParser(
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            -
            #         description="Process Markdown files from specified sources."
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            -
            #     )
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            -
            #     parser.add_argument(
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            -
            #         "sources",
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            #         nargs="+",
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            -
            #         choices=SOURCE_CONFIGS.keys(),
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            -
            #         help="Specify one or more sources to process",
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            #     )
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            -
            #     args = parser.parse_args()
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| 297 | 
            -
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            -
            #     main(args.sources)
         | 
| 299 | 
            -
             | 
| 300 | 
            -
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            import argparse
         | 
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            import json
         | 
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            import logging
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| @@ -428,6 +158,18 @@ SOURCE_CONFIGS = { | |
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                    "included_root_files": [],
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                    "url_extension": "",
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                },
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            }
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| 433 |  | 
|  | |
| 2 | 
             
            Markdown Document Processor for Documentation Sources
         | 
| 3 |  | 
| 4 | 
             
            This script processes Markdown (.md) and MDX (.mdx) files from various documentation sources
         | 
| 5 | 
            +
            (such as Hugging Face Transformers, PEFT, TRL, LlamaIndex, and OpenAI Cookbook) and converts
         | 
| 6 | 
             
            them into a standardized JSONL format for further processing or indexing.
         | 
| 7 |  | 
| 8 | 
             
            Key features:
         | 
|  | |
| 18 | 
             
            Usage:
         | 
| 19 | 
             
                python process_md_files.py <source1> <source2> ...
         | 
| 20 |  | 
| 21 | 
            +
            Where <source1>, <source2>, etc. are one or more of the predefined sources in SOURCE_CONFIGS
         | 
| 22 | 
             
            (e.g., 'transformers', 'llama_index', 'openai_cookbooks').
         | 
| 23 |  | 
| 24 | 
             
            The script processes all Markdown files in the specified input directories (and their subdirectories),
         | 
|  | |
| 28 | 
             
            To add or modify sources, update the SOURCE_CONFIGS dictionary at the top of the script.
         | 
| 29 | 
             
            """
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| 31 | 
             
            import argparse
         | 
| 32 | 
             
            import json
         | 
| 33 | 
             
            import logging
         | 
|  | |
| 158 | 
             
                    "included_root_files": [],
         | 
| 159 | 
             
                    "url_extension": "",
         | 
| 160 | 
             
                },
         | 
| 161 | 
            +
                "python_primer": {
         | 
| 162 | 
            +
                    "base_url": "",
         | 
| 163 | 
            +
                    "input_directory": "data/python_primer",
         | 
| 164 | 
            +
                    "output_file": "data/python_primer_data.jsonl",  # From Beginner to Advanced LLM Developer
         | 
| 165 | 
            +
                    "source_name": "python_primer",
         | 
| 166 | 
            +
                    "use_include_list": False,
         | 
| 167 | 
            +
                    "included_dirs": [],
         | 
| 168 | 
            +
                    "excluded_dirs": [],
         | 
| 169 | 
            +
                    "excluded_root_files": [],
         | 
| 170 | 
            +
                    "included_root_files": [],
         | 
| 171 | 
            +
                    "url_extension": "",
         | 
| 172 | 
            +
                },
         | 
| 173 | 
             
            }
         | 
| 174 |  | 
| 175 |  | 
