Upload folder using huggingface_hub

.gitignore

@@ -0,0 +1,3 @@
+Gradio_Images
+flagged
+

.idea/.gitignore

@@ -0,0 +1,3 @@
+# Default ignored files
+/shelf/
+/workspace.xml

.idea/Oxygen Level Intensity Mapper.iml

@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
+    <content url="file://$MODULE_DIR$" />
+    <orderEntry type="jdk" jdkName="teleplant" jdkType="Python SDK" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+  <component name="PyDocumentationSettings">
+    <option name="format" value="PLAIN" />
+    <option name="myDocStringFormat" value="Plain" />
+  </component>
+</module>

.idea/inspectionProfiles/Project_Default.xml

@@ -0,0 +1,27 @@
+<component name="InspectionProjectProfileManager">
+  <profile version="1.0">
+    <option name="myName" value="Project Default" />
+    <inspection_tool class="PyPackageRequirementsInspection" enabled="true" level="WARNING" enabled_by_default="true">
+      <option name="ignoredPackages">
+        <value>
+          <list size="14">
+            <item index="0" class="java.lang.String" itemvalue="scipy" />
+            <item index="1" class="java.lang.String" itemvalue="protobuf" />
+            <item index="2" class="java.lang.String" itemvalue="thop" />
+            <item index="3" class="java.lang.String" itemvalue="opencv-python" />
+            <item index="4" class="java.lang.String" itemvalue="PyYAML" />
+            <item index="5" class="java.lang.String" itemvalue="ipython" />
+            <item index="6" class="java.lang.String" itemvalue="numpy" />
+            <item index="7" class="java.lang.String" itemvalue="requests" />
+            <item index="8" class="java.lang.String" itemvalue="psutil" />
+            <item index="9" class="java.lang.String" itemvalue="tqdm" />
+            <item index="10" class="java.lang.String" itemvalue="pandas" />
+            <item index="11" class="java.lang.String" itemvalue="tensorboard" />
+            <item index="12" class="java.lang.String" itemvalue="seaborn" />
+            <item index="13" class="java.lang.String" itemvalue="matplotlib" />
+          </list>
+        </value>
+      </option>
+    </inspection_tool>
+  </profile>
+</component>

.idea/inspectionProfiles/profiles_settings.xml

@@ -0,0 +1,6 @@
+<component name="InspectionProjectProfileManager">
+  <settings>
+    <option name="USE_PROJECT_PROFILE" value="false" />
+    <version value="1.0" />
+  </settings>
+</component>

.idea/misc.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="Black">
+    <option name="sdkName" value="teleplant" />
+  </component>
+  <component name="ProjectRootManager" version="2" project-jdk-name="teleplant" project-jdk-type="Python SDK" />
+</project>

.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/Oxygen Level Intensity Mapper.iml" filepath="$PROJECT_DIR$/.idea/Oxygen Level Intensity Mapper.iml" />
+    </modules>
+  </component>
+</project>

.idea/vcs.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>

.idea/workspace.xml

@@ -0,0 +1,110 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="AutoImportSettings">
+    <option name="autoReloadType" value="SELECTIVE" />
+  </component>
+  <component name="ChangeListManager">
+    <list default="true" id="2d98c80b-c1bc-4875-942c-d13799747515" name="Changes" comment="" />
+    <option name="SHOW_DIALOG" value="false" />
+    <option name="HIGHLIGHT_CONFLICTS" value="true" />
+    <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
+    <option name="LAST_RESOLUTION" value="IGNORE" />
+  </component>
+  <component name="FileTemplateManagerImpl">
+    <option name="RECENT_TEMPLATES">
+      <list>
+        <option value="Python Script" />
+      </list>
+    </option>
+  </component>
+  <component name="Git.Settings">
+    <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
+  </component>
+  <component name="ProjectColorInfo"><![CDATA[{
+  "associatedIndex": 8
+}]]></component>
+  <component name="ProjectId" id="2iAkUe6fUvTFkpeqnkXGlbeGHqK" />
+  <component name="ProjectViewState">
+    <option name="hideEmptyMiddlePackages" value="true" />
+    <option name="showLibraryContents" value="true" />
+  </component>
+  <component name="PropertiesComponent"><![CDATA[{
+  "keyToString": {
+    "Python.app.executor": "Run",
+    "Python.main.executor": "Run",
+    "RunOnceActivity.ShowReadmeOnStart": "true",
+    "git-widget-placeholder": "master",
+    "last_opened_file_path": "/home/ubuntu/Documents/Fold1/Oxygen Level Intensity Mapper"
+  }
+}]]></component>
+  <component name="RunManager" selected="Python.app">
+    <configuration name="app" type="PythonConfigurationType" factoryName="Python" temporary="true" nameIsGenerated="true">
+      <module name="Oxygen Level Intensity Mapper" />
+      <option name="ENV_FILES" value="" />
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs>
+        <env name="PYTHONUNBUFFERED" value="1" />
+      </envs>
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <option name="IS_MODULE_SDK" value="true" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <option name="SCRIPT_NAME" value="$PROJECT_DIR$/app.py" />
+      <option name="PARAMETERS" value="" />
+      <option name="SHOW_COMMAND_LINE" value="false" />
+      <option name="EMULATE_TERMINAL" value="false" />
+      <option name="MODULE_MODE" value="false" />
+      <option name="REDIRECT_INPUT" value="false" />
+      <option name="INPUT_FILE" value="" />
+      <method v="2" />
+    </configuration>
+    <configuration name="main" type="PythonConfigurationType" factoryName="Python" temporary="true" nameIsGenerated="true">
+      <module name="Oxygen Level Intensity Mapper" />
+      <option name="ENV_FILES" value="" />
+      <option name="INTERPRETER_OPTIONS" value="" />
+      <option name="PARENT_ENVS" value="true" />
+      <envs>
+        <env name="PYTHONUNBUFFERED" value="1" />
+      </envs>
+      <option name="SDK_HOME" value="" />
+      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
+      <option name="IS_MODULE_SDK" value="true" />
+      <option name="ADD_CONTENT_ROOTS" value="true" />
+      <option name="ADD_SOURCE_ROOTS" value="true" />
+      <option name="SCRIPT_NAME" value="$PROJECT_DIR$/main.py" />
+      <option name="PARAMETERS" value="" />
+      <option name="SHOW_COMMAND_LINE" value="false" />
+      <option name="EMULATE_TERMINAL" value="false" />
+      <option name="MODULE_MODE" value="false" />
+      <option name="REDIRECT_INPUT" value="false" />
+      <option name="INPUT_FILE" value="" />
+      <method v="2" />
+    </configuration>
+    <recent_temporary>
+      <list>
+        <item itemvalue="Python.app" />
+        <item itemvalue="Python.main" />
+      </list>
+    </recent_temporary>
+  </component>
+  <component name="SharedIndexes">
+    <attachedChunks>
+      <set>
+        <option value="bundled-python-sdk-5b207ade9991-746f403e7f0c-com.jetbrains.pycharm.community.sharedIndexes.bundled-PC-241.17890.14" />
+      </set>
+    </attachedChunks>
+  </component>
+  <component name="SpellCheckerSettings" RuntimeDictionaries="0" Folders="0" CustomDictionaries="0" DefaultDictionary="application-level" UseSingleDictionary="true" transferred="true" />
+  <component name="TaskManager">
+    <task active="true" id="Default" summary="Default task">
+      <changelist id="2d98c80b-c1bc-4875-942c-d13799747515" name="Changes" comment="" />
+      <created>1718940786006</created>
+      <option name="number" value="Default" />
+      <option name="presentableId" value="Default" />
+      <updated>1718940786006</updated>
+    </task>
+    <servers />
+  </component>
+</project>

README.md

@@ -1,12 +1,55 @@
 ---
-title: Oxygen Level Intensity Mapper
-emoji: 🏆
-colorFrom: blue
-colorTo: green
+title: oxygen_level_intensity_mapper
+app_file: app.py
 sdk: gradio
 sdk_version: 4.36.1
-app_file: app.py
-pinned: false
 ---
+# Oxygen Level Heatmap Generator
+
+This Python script processes an image to generate a heatmap representing oxygen levels based on the intensity of the image. The image is divided into a 32x32 grid, and the intensity of each grid cell is calculated, normalized, and mapped to oxygen levels using a provided mapping table.
+
+## Features
+
+- Divide an image into a 32x32 grid.
+- Calculate the intensity of each grid cell.
+- Normalize the intensity values.
+- Map the normalized intensities to oxygen levels based on a provided table.
+- Generate and save a heatmap showing the oxygen levels.
+
+## Requirements
+
+- Python 3.x
+- NumPy
+- Pillow
+- Matplotlib
+- SciPy
+
+## Installation
+
+You can install the required Python libraries using `pip`:
+
+```bash
+pip install -r requirements.txt 
+```
+
+## Usage
+
+1. **Prepare the image:**
+   Place your image file in the `Raw_Images` directory or any directory of your choice.
+
+2. **Run the script:**
+   Update the `image_path` variable in the script to point to your image file and run the script.
+
+3. **Output:**
+   The generated heatmap will be saved in the `Heatmap_Images` directory with the filename `{image_name}_heatmap.jpg`.
+
+
+## Run Script
+
+To run the script you can just run following command in terminal;
+
+```python
+python main.py
+```
 
-Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
+Make sure the current working directory shall be the Folder named 'Oxygen-Level-Intensity-Mapper/' 

app.py

@@ -0,0 +1,15 @@
+import gradio as gr
+
+from main import process_and_generate_heatmap
+
+if __name__ == "__main__":
+    iface = gr.Interface(
+        fn=process_and_generate_heatmap,
+        inputs=gr.Image(type="pil"),
+        outputs=gr.File(label="Heatmap Image"),
+        title="Heatmap Generator",
+        description="Upload an image to generate a high-resolution heatmap."
+    )
+
+    # Launch the app
+    iface.launch(share=True)

main.py

@@ -0,0 +1,117 @@
+import numpy as np
+from PIL import Image
+import matplotlib.pyplot as plt
+import matplotlib.colors as mcolors
+from scipy.interpolate import interp1d
+import os
+import uuid
+
+
+def calculate_intensity(image):
+    """
+    Calculate the intensity of the image by converting it to grayscale
+    and taking the mean value.
+    """
+    gray_image = image.convert('L')  # Convert to grayscale
+    intensity = np.mean(np.array(gray_image))
+    return intensity
+
+
+def process_image(image_path):
+    """
+    Process the image by dividing it into 32x32 grids and calculating normalized intensity.
+    """
+    # Open the image
+    image = Image.open(image_path)
+    width, height = image.size
+
+    # Determine the ideal grid size
+    grid_width = width // 32
+    grid_height = height // 32
+
+    intensities = []
+
+    # Divide the image into grids and calculate intensity for each grid
+    for y in range(32):
+        row_intensities = []
+        for x in range(32):
+            left = x * grid_width
+            upper = y * grid_height
+            right = left + grid_width
+            lower = upper + grid_height
+
+            # Crop the image to the grid
+            grid = image.crop((left, upper, right, lower))
+            intensity = calculate_intensity(grid)
+            row_intensities.append(intensity)
+        intensities.append(row_intensities)
+
+    intensities = np.array(intensities)
+
+    # Normalize the intensities to the range 0-1
+    min_intensity = intensities.min()
+    max_intensity = intensities.max()
+    normalized_intensities = (intensities - min_intensity) / (max_intensity - min_intensity)
+
+    return normalized_intensities
+
+
+def intensity_to_oxygen_level(normalized_intensities):
+    """
+    Map normalized intensity values to oxygen levels using interpolation.
+    """
+    # Provided mapping table
+    ksv_values = [0, 0.009303080328, 0.19176, 0.5196879311, 0.6252571452, 0.7115134738,
+                  0.8476158622, 0.9531850764, 1.039441405, 1.145010619, 1.175543793,
+                  1.231266948, 1.281113007, 1.47293855, 1.609040939]
+    oxygen_levels = [0, 0.68, 1, 2, 2.5, 3, 4, 5, 6, 7.5, 8, 9, 10, 15, 20]
+
+    # Normalize intensities to match the range of Ksv values
+    min_ksv = min(ksv_values)
+    max_ksv = max(ksv_values)
+    normalized_intensities = (normalized_intensities * (max_ksv - min_ksv)) + min_ksv
+
+    # Interpolation function
+    interp_func = interp1d(ksv_values, oxygen_levels, kind='linear', fill_value='extrapolate')
+    oxygen_levels_mapped = interp_func(normalized_intensities)
+
+    return oxygen_levels_mapped
+
+
+def generate_heatmap(data, output_path):
+    """
+    Generate a high-resolution heatmap from data and save it as an image.
+    """
+    plt.figure(figsize=(10, 8))
+    plt.imshow(data, cmap='RdBu_r', interpolation='nearest', norm=mcolors.Normalize(vmin=0, vmax=20))
+    plt.colorbar(label='Oxygen Level (%)')
+
+    # Save the figure with high resolution
+    plt.savefig(output_path, dpi=300)
+    plt.close()
+
+
+def process_and_generate_heatmap(image):
+    """
+    Process the image and generate a heatmap, saving the result to a file.
+    """
+    # Generate a unique name for the input image
+    unique_id = str(uuid.uuid4())
+    input_dir = 'Gradio_Images'
+    input_image_path = os.path.join(input_dir, f'uploaded_image_{unique_id}.jpg')
+    image.save(input_image_path)
+
+    # Process the image to get normalized intensities
+    normalized_intensities = process_image(input_image_path)
+    oxygen_levels = intensity_to_oxygen_level(normalized_intensities)
+
+    # Generate the output path for the heatmap based on the unique name
+    output_dir = 'Heatmap_Images'
+
+    output_image_path = os.path.join(output_dir, f'heatmap_{unique_id}.jpg')
+
+    generate_heatmap(oxygen_levels, output_image_path)
+
+    return output_image_path
+
+

requirements.txt

@@ -0,0 +1,4 @@
+matplotlib==3.8.4
+numpy==1.26.4
+Pillow==10.0.1
+scipy==1.13.1