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·
c10a0ce
1
Parent(s):
e4eb08d
Update app.py
Browse files
app.py
CHANGED
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@@ -1268,8 +1268,8 @@ with proteinMPNN:
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minimum=1, maximum=15, value=1, step=1, label="Number of sequences"
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)
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sampling_temp = gr.Radio(
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choices=[0.1, 0.15, 0.2, 0.25, 0.3],
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value=0.1,
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label="Sampling temperature",
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)
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gr.Markdown(
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@@ -1290,7 +1290,7 @@ with proteinMPNN:
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value="vanilla—v_48_020",
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)
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backbone_noise = gr.Dropdown(
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choices=[0, 0.02, 0.10, 0.20, 0.30], label="Backbone noise", value=0
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)
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with gr.Row():
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homomer = gr.Checkbox(value=False, label="Homomer?")
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@@ -1337,17 +1337,17 @@ with proteinMPNN:
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atomsel,
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],
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samples=[
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["Homomer design", "1O91", "A,B,C", "", True, 2, 0.1, ""],
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["Monomer design", "6MRR", "A", "", False, 2, 0.1, ""],
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["Redesign of Homomer to Heteromer", "3HTN", "A,B", "C", False, 2, 0.1, ""],
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[
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"Redesign of MID1 scaffold keeping binding site fixed",
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"3V1C",
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"A,B",
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"",
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False,
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2,
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0.1,
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"within 5 of resname ZN",
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],
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[
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@@ -1356,8 +1356,8 @@ with proteinMPNN:
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"A,B",
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"",
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False,
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2,
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0.1,
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"within 8 of nucleic",
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],
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[
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@@ -1366,8 +1366,8 @@ with proteinMPNN:
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"A,B",
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"",
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False,
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2,
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0.1,
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"chain B or (chain A and sasa < 20)",
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],
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],
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@@ -1407,7 +1407,7 @@ with proteinMPNN:
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visible=False,
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)
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num_recycles = gr.Dropdown(
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choices=[0, 1, 3, 5], value=3, label="num Recycles"
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)
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btnAF = gr.Button("Run AlphaFold on all sequences")
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with gr.Row():
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minimum=1, maximum=15, value=1, step=1, label="Number of sequences"
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)
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sampling_temp = gr.Radio(
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choices=["0.1", "0.15", "0.2", "0.25", "0.3"],
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value="0.1",
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label="Sampling temperature",
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)
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gr.Markdown(
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value="vanilla—v_48_020",
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)
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backbone_noise = gr.Dropdown(
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choices=["0", "0.02", "0.10", "0.20", "0.30"], label="Backbone noise", value="0"
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)
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with gr.Row():
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homomer = gr.Checkbox(value=False, label="Homomer?")
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atomsel,
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],
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samples=[
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["Homomer design", "1O91", "A,B,C", "", True, "2", "0.1", ""],
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["Monomer design", "6MRR", "A", "", False, "2", "0.1", ""],
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["Redesign of Homomer to Heteromer", "3HTN", "A,B", "C", False, "2", "0.1", ""],
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[
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"Redesign of MID1 scaffold keeping binding site fixed",
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"3V1C",
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"A,B",
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"",
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False,
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"2",
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"0.1",
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"within 5 of resname ZN",
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],
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[
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"A,B",
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"",
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False,
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"2",
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"0.1",
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"within 8 of nucleic",
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],
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[
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"A,B",
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"",
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False,
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"2",
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"0.1",
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"chain B or (chain A and sasa < 20)",
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],
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],
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visible=False,
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)
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num_recycles = gr.Dropdown(
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choices=["0", "1", "3", "5"], value="3", label="num Recycles"
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)
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btnAF = gr.Button("Run AlphaFold on all sequences")
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with gr.Row():
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