readme: ---
  tags:
  - generated_from_trainer
  widget:
  - text: "Tachycardia is an increased heart rate for any reason. It can be a usual rise in heart rate caused by exercise or a stress response. Sinus tachycardia is considered a symptom, not a disease."
    example_title: "Tachycardia"
  - text: "Tuberculosis is a potentially serious infectious disease that mainly affects the lungs. Signs and symptoms of active TB include: Fatigue, Fever, Night sweats, Chills, Loss of appetite. Blood tests can confirm or rule out latent or active tuberculosis. The most common medications used to treat tuberculosis include: Isoniazid, Rifampin (Rifadin, Rimactane), Ethambutol (Myambutol), Pyrazinamide."
    example_title: "Tuberculosis"
  - text: "Cholera is a bacterial disease usually spread through contaminated water. A bacterium called Vibrio cholerae causes cholera infection. Symptoms of cholera infection can include: Diarrhea, Nausea, vomiting, Dehydration. Risk factors for cholera include: Poor sanitary conditions, Household exposure, Type O blood, Raw or undercooked shellfish."
    example_title: "Cholera"
  metrics:
  - precision
  - recall
  - f1
  - accuracy
  model-index:
  - name: bioBERT-PyTorch
    results: []
  ---
  
  <!-- This model card has been generated automatically according to the information the Trainer had access to. You
  should probably proofread and complete it, then remove this comment. -->
  
  # bioBERT-PyTorch
  
  This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on the None dataset.
  It achieves the following results on the evaluation set:
  - Loss: 0.5944
  - Precision: 0.4854
  - Recall: 0.5740
  - F1: 0.5260
  - Accuracy: 0.8119
  
  ## Model description
  
  More information needed
  
  ## Intended uses & limitations
  
  More information needed
  
  ## Training and evaluation data
  
  More information needed
  
  ## Training procedure
  
  ### Training hyperparameters
  
  The following hyperparameters were used during training:
  - learning_rate: 2e-05
  - train_batch_size: 16
  - eval_batch_size: 16
  - seed: 42
  - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
  - lr_scheduler_type: linear
  - num_epochs: 4
  
  ### Training results
  
  | Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
  |:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
  | No log        | 1.0   | 89   | 0.8478          | 0.4286    | 0.4789 | 0.4524 | 0.7522   |
  | No log        | 2.0   | 178  | 0.6370          | 0.4788    | 0.5559 | 0.5145 | 0.8022   |
  | No log        | 3.0   | 267  | 0.5919          | 0.4904    | 0.5709 | 0.5276 | 0.8145   |
  | No log        | 4.0   | 356  | 0.5944          | 0.4854    | 0.5740 | 0.5260 | 0.8119   |
  
  
  ### Framework versions
  
  - Transformers 4.20.1
  - Pytorch 1.11.0
  - Datasets 2.1.0
  - Tokenizers 0.12.1
  