readme: ---
  language:
  - en
  pipeline_tag: token-classification
  ---
  
  Named Entity Recognition (NER) model to recognize cell type entities.
  
  [PubMedBERT](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) fine-tuned on the following dataset:
  - [CRAFT](https://github.com/UCDenver-ccp/CRAFT/tree/master/concept-annotation): entity type "CL"
  - [BioNLP13CG](): entity type "Cell"
  - [JNLPBA](http://www.geniaproject.org/shared-tasks/bionlp-jnlpba-shared-task-2004): entity type "cell_type"
  - [CellFinder](http://cellfinder.org/about/annotation/): entity type "CellType"