Upload 2 files
Browse files- config/config_hparam.json +26 -0
- config/predict.json +26 -0
config/config_hparam.json
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{ "name": "biomarker_log",
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"d_model_name" : "DeepChem/ChemBERTa-10M-MTR",
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"p_model_name" : "DeepChem/ChemBERTa-77M-MLM",
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"gpu_ids" : "0",
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"model_mode" : "train",
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"load_checkpoint" : "./checkpoint/bindingDB/test.ckpt",
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"prot_maxlength" : 360,
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"layer_limit" : true,
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"max_epoch": 16,
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"batch_size": 40,
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"num_workers": 0,
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"task_name" : "OSC",
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"lr": 1e-4,
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"layer_features" : [512, 128, 64, 1],
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"dropout" : 0.1,
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"loss_fn" : "MSE",
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"traindata_rate" : 1.0,
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"pretrained": {"chem":true, "prot":true},
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"num_seed" : 111
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}
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config/predict.json
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{ "name": "biomarker_log",
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"d_model_name" : "DeepChem/ChemBERTa-10M-MLM",
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"p_model_name" : "DeepChem/ChemBERTa-10M-MTR",
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"gpu_ids" : "0",
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"model_mode" : "test",
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"load_checkpoint" : "./OSC/test.ckpt",
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"prot_maxlength" : 360,
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"layer_limit" : true,
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"max_epoch": 16,
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"batch_size": 40,
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"num_workers": 0,
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"task_name" : "OSC",
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"lr": 1e-4,
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"layer_features" : [128, 128, 128, 1],
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"dropout" : 0.1,
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"loss_fn" : "MSE",
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"traindata_rate" : 1.0,
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"pretrained": {"chem":true, "prot":true},
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"num_seed" : 111
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}
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