(chore): add MANIFEST file to track project files and their states

MANIFEST.git

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+100644 cfc04f24571aecd66e900d29bd94a311bb2e1111 0	.gitignore
+100644 261eeb9e9f8b2b4b0d119366dda99c6fd7d35c64 0	LICENSE
+100644 1bab8241aa1dd7325c43ed937510646c9de50759 0	README.md
+100644 2e5679a509eed8c11a522df1d5e7fc89f2a95da6 0	app/ui_app.py
+100644 c18dd8d83ceed1806b50b0aaa46beb7e335fff13 0	backend/.gitignore
+100644 a23d89493ce1a6557368b8424e00d2b0a564deeb 0	backend/inference_utils.py
+100644 b1eb4466d4ef220de29438d4b32de8fea1950687 0	backend/main.py
+100644 df16ea87b7dfe3601ed0aa15fa8a563549b71502 0	dashboard/app.py
+100644 08c771b09d2833a50c101294e7e56f24068f1fed 0	docs/BACKEND_MIGRATION_LOG.md
+100644 ededbc2c9d95767d04c0d6a63d6e9b2cd77432d9 0	docs/ENVIRONMENT_GUIDE.md
+100644 9838325b68b604409bb463a449fd850b57674342 0	docs/HPC_REMOTE_SETUP.md
+100644 02e4813140e43533cabe01bc2a816f3740260f76 0	docs/LICENSE
+100644 56b984636170bd2178c77c4933f753e2afb8a65f 0	docs/PROJECT_TIMELINE.md
+100644 f6376d986813734264e70c6cbf45fbf2c40f82c1 0	docs/REPRODUCIBILITY.md
+100644 e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 0	models/__init__.py
+100644 704266bdfe413b4b0a77879a1c66878ce6eab0dd 0	models/figure2_cnn.py
+100644 9104b59d82ccd5d36ad4ec47f57e3b5ca0fc80aa 0	models/resnet_cnn.py
+100644 ce43e850e5f7890d9e324e8c41e3b8f9fdc3a832 0	outputs/resnet_model.pth
+100644 e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 0	scripts/__init__.py
+100644 c1f269413e6c89dbef52221db02b5490e7e8d95d 0	scripts/discover_raman_files.py
+100644 6cc73d3ce4e95109ec51583c9831e4f72b4c8a82 0	scripts/list_spectra.py
+100644 136ca3d29e3406a9bed641e19c54da966068e95e 0	scripts/plot_spectrum.py
+100644 c59c21dfd5359e6a3a34199088ff15199c0649f5 0	scripts/preprocess_dataset.py
+100644 77267ae19fcd0fb0e11c664d451d7b7395cd3f30 0	scripts/run_inference.py
+100644 a33fc333522a302cfad5e4139202f3e9cf416921 0	scripts/train_model.py
+100644 5aa6bedb24c303e2fed8554e40a2bbf965616200 0	validate_pipeline.sh