pyproject.toml

[project]
name = "opensymbiose"
version = "0.0.4"
description = "OpenSymbiose is an open-source biotechnology / biology research AI agent designed to support researcher."
readme = "README.md"
requires-python = ">=3.10"
authors = [
    { name = "Corentin Meyer", email = "[email protected]" },
]
maintainers = [
    { name = "Corentin Meyer", email = "[email protected]" }
]
dependencies = [
    "biopython>=1.85",
    "bioservices>=1.12.1",
    "gradio>=5.31.0",
    "mistralai>=1.8.0",
    "python-dotenv>=1.1.0",
]

[project.urls]
Homepage = "https://github.com/lambda-science/OpenSymbiose"
Documentation = "https://lambda-science.github.io/OpenSymbiose/"
Repository = "https://github.com/lambda-science/OpenSymbiose"
Issues = "https://github.com/lambda-science/OpenSymbiose/issues"

[dependency-groups]
dev = [
    "ruff",
    "pytest",
    "pytest-cov",
    "ty",
    "pre-commit",
]

[tool.hatch.metadata]
allow-direct-references = true

[tool.hatch.build.targets.wheel]
packages = ["src/opensymbiose"]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project.scripts]
opensymbiose = "opensymbiose.gradio.app:demo.launch"

[tool.ruff]
target-version = "py313"

[tool.coverage.run]
omit = ["tests/*"]