anaghanagesh commited on
Commit
6687bc1
·
verified ·
1 Parent(s): 9d9399a

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +12 -5
app.py CHANGED
@@ -17,15 +17,22 @@ def drug_discovery(disease, symptoms):
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  literature = bio_gpt(prompt, max_length=200)[0]['generated_text']
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  # Generate SMILES using BioGPT
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- molecule_prompt = f"Generate a valid drug-like SMILES string for treating {disease} with symptoms {symptoms}. Output only the SMILES."
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  smiles_result = bio_gpt(molecule_prompt, max_length=50)[0]['generated_text']
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- smiles_match = re.findall(r"[A-Za-z0-9@+\-\[\]\(\)=#$]{5,}", smiles_result)
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- smiles = smiles_match[0] if smiles_match else "CC(C)CC" # fallback
 
 
 
 
 
 
 
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  # Generate RDKit molecule
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  mol = Chem.MolFromSmiles(smiles)
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  if not mol:
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- return "Invalid SMILES generated", "", "", ""
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  AllChem.Compute2DCoords(mol)
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@@ -54,7 +61,6 @@ def drug_discovery(disease, symptoms):
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  viewer.setStyle({"stick": {"colorscheme": "cyanCarbon"}})
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  viewer.setBackgroundColor("black")
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  viewer.zoomTo()
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- viewer.rotate(1)
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  viewer.spin(True)
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  viewer_html_raw = viewer._make_html()
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@@ -118,3 +124,4 @@ iface = gr.Interface(
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  )
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  iface.launch(share=True)
 
 
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  literature = bio_gpt(prompt, max_length=200)[0]['generated_text']
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  # Generate SMILES using BioGPT
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+ molecule_prompt = f"Generate a valid drug-like SMILES string for treating {disease} with symptoms {symptoms}. Only return the SMILES."
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  smiles_result = bio_gpt(molecule_prompt, max_length=50)[0]['generated_text']
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+ smiles_match = re.findall(r"(?<![A-Za-z0-9])[A-Za-z0-9@+\-\[\]\(\)=#$]{5,}(?![A-Za-z0-9])", smiles_result)
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+ smiles = None
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+ for match in smiles_match:
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+ mol_test = Chem.MolFromSmiles(match)
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+ if mol_test:
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+ smiles = match
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+ break
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+ if not smiles:
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+ smiles = "CC(C)CC" # fallback to isopentane
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  # Generate RDKit molecule
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  mol = Chem.MolFromSmiles(smiles)
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  if not mol:
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+ return "Invalid SMILES generated", smiles, "", ""
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  AllChem.Compute2DCoords(mol)
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  viewer.setStyle({"stick": {"colorscheme": "cyanCarbon"}})
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  viewer.setBackgroundColor("black")
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  viewer.zoomTo()
 
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  viewer.spin(True)
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  viewer_html_raw = viewer._make_html()
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  )
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  iface.launch(share=True)
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+