"""Significance testing utilities (Wilcoxon, Holm-Bonferroni, delta‐metric)."""

from __future__ import annotations
from typing import Sequence, Mapping, List, Tuple

import numpy as np
from scipy import stats


def wilcoxon_signed_rank(
    x: Sequence[float],
    y: Sequence[float],
    *,
    alternative: str = "two-sided",
) -> tuple[float, float]:
    """Paired Wilcoxon signed-rank test (wrapper)."""
    res = stats.wilcoxon(x, y, alternative=alternative)
    return float(res.statistic), float(res.pvalue)


def holm_bonferroni(pvalues: Mapping[str, float]) -> Mapping[str, float]:
    """Holm-Bonferroni correction for multiple hypotheses.

    Parameters
    ----------
    pvalues : dict
        Mapping from *name* → raw p-value.

    Returns
    -------
    dict
        Mapping from *name* → adjusted p-value.
    """
    m = len(pvalues)
    sorted_items: List[Tuple[str, float]] = sorted(pvalues.items(), key=lambda kv: kv[1])
    adjusted: dict[str, float] = {}
    for i, (name, p) in enumerate(sorted_items, start=1):
        adjusted[name] = min((m - i + 1) * p, 1.0)
    return adjusted