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adata.h5ad

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lightning_logs/version_0/hparams.yaml

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lightning_logs/version_1/hparams.yaml

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metrics.json

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 {
-    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.31  | 1.34           |\n| Pearson Correlation | 0.83  | 0.83  |\n| Spearman Correlation | 0.82 | 0.81  |\n| R\u00b2 (R-Squared) | 0.61  | 0.60      |",
-    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 18.19   |\n| Pearson Correlation | 0.66  |\n| Spearman Correlation | 0.69 |\n| R\u00b2 (R-Squared) | -1.22  |",
-    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 0.96 | 0.38 | 0.86 | 0.98 | 0.35 | 0.92 | 8459.00 |\n| endothelial cell | 0.87 | 0.61 | 0.78 | 0.97 | 0.43 | 0.92 | 3748.00 |\n| macrophage | 0.84 | 0.65 | 0.76 | 0.97 | 0.41 | 0.92 | 2807.00 |\n| T cell | 0.94 | 1.54 | 0.65 | 0.90 | 0.26 | 0.86 | 1715.00 |\n| mesenchymal stem cell | 0.91 | 1.01 | 0.72 | 0.94 | 0.42 | 0.89 | 1311.00 |\n| myofibroblast cell | 0.91 | 1.48 | 0.70 | 0.91 | 0.27 | 0.82 | 982.00 |\n| mature NK T cell | 0.88 | 2.44 | 0.64 | 0.85 | 0.29 | 0.81 | 572.00 |\n| neutrophil | 0.90 | 3.11 | 0.68 | 0.76 | 0.20 | 0.92 | 440.00 |\n| leukocyte | 0.53 | 5.20 | 0.50 | 0.69 | 0.17 | 0.73 | 160.00 |\n| plasma cell | 0.72 | 4.83 | 0.55 | 0.60 | 0.24 | 0.75 | 26.00 |\n| B cell | 0.23 | 10.37 | 0.35 | 0.37 | 0.19 | 0.72 | 23.00 |\n| smooth muscle cell | 0.71 | 5.48 | 0.57 | 0.55 | 0.33 | 0.66 | 16.00 |"
+    "cell_wise_cv": "| Metric                  | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.32  | 1.34           |\n| Pearson Correlation | 0.83  | 0.83  |\n| Spearman Correlation | 0.81 | 0.81  |\n| R\u00b2 (R-Squared) | 0.61  | 0.60      |",
+    "gene_wise_cv": "| Metric                  | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 18.03   |\n| Pearson Correlation | 0.67  |\n| Spearman Correlation | 0.69 |\n| R\u00b2 (R-Squared) | -1.17  |",
+    "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| fibroblast | 0.96 | 0.41 | 0.82 | 0.98 | 0.36 | 0.92 | 8459.00 |\n| endothelial cell | 0.87 | 0.58 | 0.80 | 0.97 | 0.43 | 0.92 | 3748.00 |\n| macrophage | 0.83 | 0.60 | 0.80 | 0.96 | 0.41 | 0.92 | 2807.00 |\n| T cell | 0.95 | 1.56 | 0.63 | 0.90 | 0.25 | 0.86 | 1715.00 |\n| mesenchymal stem cell | 0.90 | 1.04 | 0.71 | 0.94 | 0.41 | 0.89 | 1311.00 |\n| myofibroblast cell | 0.92 | 1.51 | 0.68 | 0.90 | 0.28 | 0.82 | 982.00 |\n| mature NK T cell | 0.88 | 2.38 | 0.64 | 0.85 | 0.28 | 0.81 | 572.00 |\n| neutrophil | 0.90 | 2.98 | 0.70 | 0.78 | 0.18 | 0.91 | 440.00 |\n| leukocyte | 0.50 | 5.25 | 0.49 | 0.69 | 0.17 | 0.73 | 160.00 |\n| plasma cell | 0.75 | 5.00 | 0.54 | 0.59 | 0.24 | 0.75 | 26.00 |\n| B cell | 0.26 | 10.28 | 0.36 | 0.38 | 0.20 | 0.72 | 23.00 |\n| smooth muscle cell | 0.72 | 5.85 | 0.54 | 0.52 | 0.33 | 0.66 | 16.00 |"
 }

model.pt

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