Create scripts/run_model.sh (#5)
Browse files- Create scripts/run_model.sh (f6e3642f9daa9c9e094291f028fc8c1504df251e)
Co-authored-by: Ryan Keivanfar <[email protected]>
- scripts/run_model.sh +7 -0
scripts/run_model.sh
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#!/bin/bash
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# Ensure that you have hg38.fa and hg38.fa.fai in Tahoeformer/data
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# wget -O - http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz | gunzip -c > /PATH/TO/Tahoeformer/data/hg38.fa
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# samtools samtools faidx /PATH/TO/Tahoeformer/data/hg38.fa
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python /PATH/TO/Tahoeformer/scripts/train.py --config /PATH/TO/Tahoeformer/configs/config.yaml
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