| name: tahoeformer_env | |
| channels: | |
| - pytorch | |
| - nvidia | |
| - bioconda | |
| - conda-forge | |
| dependencies: | |
| - _openmp_mutex=4.5=3_kmp_llvm | |
| - alsa-lib=1.2.8=h166bdaf_0 | |
| - argcomplete=3.6.2=pyhd8ed1ab_0 | |
| - argh=0.31.3=pyhd8ed1ab_1 | |
| - asttokens=3.0.0=pyhd8ed1ab_1 | |
| - attr=2.5.1=h166bdaf_1 | |
| - bcftools=1.17=h3cc50cf_1 | |
| - biopython=1.85=py310ha75aee5_1 | |
| - blas=1.0=mkl | |
| - brotli=1.1.0=hb9d3cd8_2 | |
| - brotli-bin=1.1.0=hb9d3cd8_2 | |
| - bzip2=1.0.8=h4bc722e_7 | |
| - c-ares=1.34.5=hb9d3cd8_0 | |
| - ca-certificates=2025.4.26=hbd8a1cb_0 | |
| - cached-property=1.5.2=hd8ed1ab_1 | |
| - cached_property=1.5.2=pyha770c72_1 | |
| - cairo=1.16.0=ha61ee94_1014 | |
| - certifi=2025.4.26=pyhd8ed1ab_0 | |
| - comm=0.2.2=pyhd8ed1ab_1 | |
| - contourpy=1.3.2=py310h3788b33_0 | |
| - cpython=3.10.17=py310hd8ed1ab_0 | |
| - cramjam=2.10.0=py310hed47299_0 | |
| - cuda-cudart=12.1.105=0 | |
| - cuda-cupti=12.1.105=0 | |
| - cuda-libraries=12.1.0=0 | |
| - cuda-nvrtc=12.1.105=0 | |
| - cuda-nvtx=12.1.105=0 | |
| - cuda-opencl=12.9.19=0 | |
| - cuda-runtime=12.1.0=0 | |
| - cuda-version=12.9=3 | |
| - cudnn=9.9.0.52=h3828807_0 | |
| - cycler=0.12.1=pyhd8ed1ab_1 | |
| - dbus=1.13.6=h5008d03_3 | |
| - debugpy=1.8.14=py310hf71b8c6_0 | |
| - decorator=5.2.1=pyhd8ed1ab_0 | |
| - exceptiongroup=1.2.2=pyhd8ed1ab_1 | |
| - executing=2.2.0=pyhd8ed1ab_0 | |
| - expat=2.7.0=h5888daf_0 | |
| - fastparquet=2024.11.0=py310hf462985_0 | |
| - fftw=3.3.10=nompi_hf1063bd_110 | |
| - filelock=3.18.0=pyhd8ed1ab_0 | |
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | |
| - font-ttf-inconsolata=3.000=h77eed37_0 | |
| - font-ttf-source-code-pro=2.038=h77eed37_0 | |
| - font-ttf-ubuntu=0.83=h77eed37_3 | |
| - fontconfig=2.14.2=h14ed4e7_0 | |
| - fonts-conda-ecosystem=1=0 | |
| - fonts-conda-forge=1=0 | |
| - fonttools=4.57.0=py310h89163eb_0 | |
| - freetype=2.12.1=h267a509_2 | |
| - fsspec=2025.3.2=pyhd8ed1ab_0 | |
| - gettext=0.24.1=h5888daf_0 | |
| - gettext-tools=0.24.1=h5888daf_0 | |
| - gffutils=0.13=pyh7cba7a3_0 | |
| - glib=2.80.2=hf974151_0 | |
| - glib-tools=2.80.2=hb6ce0ca_0 | |
| - gmp=6.3.0=hac33072_2 | |
| - gmpy2=2.2.1=py310he8512ff_0 | |
| - graphite2=1.3.13=h59595ed_1003 | |
| - gsl=2.7=he838d99_0 | |
| - gst-plugins-base=1.21.3=h4243ec0_1 | |
| - gstreamer=1.21.3=h25f0c4b_1 | |
| - gstreamer-orc=0.4.41=h17648ed_0 | |
| - h5py=3.9.0=nompi_py310h367e799_100 | |
| - harfbuzz=6.0.0=h8e241bc_0 | |
| - hdf5=1.14.0=nompi_h5231ba7_103 | |
| - htslib=1.17=h6bc39ce_1 | |
| - icu=70.1=h27087fc_0 | |
| - importlib-metadata=8.6.1=pyha770c72_0 | |
| - ipykernel=6.29.5=pyh3099207_0 | |
| - ipython=8.36.0=pyh907856f_0 | |
| - jack=1.9.22=h11f4161_0 | |
| - jedi=0.19.2=pyhd8ed1ab_1 | |
| - jinja2=3.1.6=pyhd8ed1ab_0 | |
| - joblib=1.5.0=pyhd8ed1ab_0 | |
| - jpeg=9e=h0b41bf4_3 | |
| - jupyter_client=8.6.3=pyhd8ed1ab_1 | |
| - jupyter_core=5.7.2=pyh31011fe_1 | |
| - keyutils=1.6.1=h166bdaf_0 | |
| - kiwisolver=1.4.7=py310h3788b33_0 | |
| - krb5=1.20.1=hf9c8cef_0 | |
| - lame=3.100=h166bdaf_1003 | |
| - lcms2=2.15=hfd0df8a_0 | |
| - ld_impl_linux-64=2.43=h712a8e2_4 | |
| - lerc=4.0.0=h0aef613_1 | |
| - libaec=1.1.3=h59595ed_0 | |
| - libasprintf=0.24.1=h8e693c7_0 | |
| - libasprintf-devel=0.24.1=h8e693c7_0 | |
| - libblas=3.9.0=16_linux64_mkl | |
| - libbrotlicommon=1.1.0=hb9d3cd8_2 | |
| - libbrotlidec=1.1.0=hb9d3cd8_2 | |
| - libbrotlienc=1.1.0=hb9d3cd8_2 | |
| - libcap=2.66=ha37c62d_0 | |
| - libcblas=3.9.0=16_linux64_mkl | |
| - libclang=15.0.7=default_h127d8a8_5 | |
| - libclang13=15.0.7=default_h5d6823c_5 | |
| - libcublas=12.1.0.26=0 | |
| - libcufft=11.0.2.4=0 | |
| - libcufile=1.14.0.30=4 | |
| - libcups=2.3.3=h36d4200_3 | |
| - libcurand=10.3.10.19=0 | |
| - libcurl=7.87.0=h6312ad2_0 | |
| - libcusolver=11.4.4.55=0 | |
| - libcusparse=12.0.2.55=0 | |
| - libdb=6.2.32=h9c3ff4c_0 | |
| - libdeflate=1.17=h0b41bf4_0 | |
| - libedit=3.1.20250104=pl5321h7949ede_0 | |
| - libev=4.33=hd590300_2 | |
| - libevent=2.1.10=h9b69904_4 | |
| - libexpat=2.7.0=h5888daf_0 | |
| - libffi=3.4.6=h2dba641_1 | |
| - libflac=1.4.3=h59595ed_0 | |
| - libgcc=14.2.0=h767d61c_2 | |
| - libgcc-ng=14.2.0=h69a702a_2 | |
| - libgcrypt=1.11.0=ha770c72_2 | |
| - libgcrypt-devel=1.11.0=hb9d3cd8_2 | |
| - libgcrypt-lib=1.11.0=hb9d3cd8_2 | |
| - libgcrypt-tools=1.11.0=hb9d3cd8_2 | |
| - libgettextpo=0.24.1=h5888daf_0 | |
| - libgettextpo-devel=0.24.1=h5888daf_0 | |
| - libgfortran=14.2.0=h69a702a_2 | |
| - libgfortran-ng=14.2.0=h69a702a_2 | |
| - libgfortran5=14.2.0=hf1ad2bd_2 | |
| - libglib=2.80.2=hf974151_0 | |
| - libgpg-error=1.55=h3f2d84a_0 | |
| - libhwloc=2.9.1=hd6dc26d_0 | |
| - libiconv=1.18=h4ce23a2_1 | |
| - liblapack=3.9.0=16_linux64_mkl | |
| - libllvm15=15.0.7=hadd5161_1 | |
| - libltdl=2.4.3a=h5888daf_0 | |
| - libnghttp2=1.51.0=hdcd2b5c_0 | |
| - libnpp=12.0.2.50=0 | |
| - libnsl=2.0.1=hd590300_0 | |
| - libnvjitlink=12.1.105=0 | |
| - libnvjpeg=12.1.1.14=0 | |
| - libogg=1.3.5=hd0c01bc_1 | |
| - libopus=1.5.2=hd0c01bc_0 | |
| - libpng=1.6.43=h2797004_0 | |
| - libpq=15.1=h2baec63_3 | |
| - libsndfile=1.2.2=hc60ed4a_1 | |
| - libsodium=1.0.18=h36c2ea0_1 | |
| - libsqlite=3.46.0=hde9e2c9_0 | |
| - libssh2=1.10.0=haa6b8db_3 | |
| - libstdcxx=14.2.0=h8f9b012_2 | |
| - libstdcxx-ng=14.2.0=h4852527_2 | |
| - libsystemd0=252=h2a991cd_0 | |
| - libtiff=4.5.0=h6adf6a1_2 | |
| - libtool=2.5.4=h5888daf_0 | |
| - libudev1=253=h0b41bf4_0 | |
| - libuuid=2.38.1=h0b41bf4_0 | |
| - libvorbis=1.3.7=h9c3ff4c_0 | |
| - libwebp-base=1.5.0=h851e524_0 | |
| - libxcb=1.13=h7f98852_1004 | |
| - libxcrypt=4.4.36=hd590300_1 | |
| - libxkbcommon=1.5.0=h79f4944_1 | |
| - libxml2=2.10.3=hca2bb57_4 | |
| - libzlib=1.2.13=h4ab18f5_6 | |
| - llvm-openmp=15.0.7=h0cdce71_0 | |
| - lz4-c=1.9.4=hcb278e6_0 | |
| - markupsafe=3.0.2=py310h89163eb_1 | |
| - matplotlib=3.9.1=py310hff52083_1 | |
| - matplotlib-base=3.9.1=py310hf02ac8c_2 | |
| - matplotlib-inline=0.1.7=pyhd8ed1ab_1 | |
| - mkl=2022.2.1=h84fe81f_16997 | |
| - mpc=1.3.1=h24ddda3_1 | |
| - mpfr=4.2.1=h90cbb55_3 | |
| - mpg123=1.32.9=hc50e24c_0 | |
| - mpmath=1.3.0=pyhd8ed1ab_1 | |
| - munkres=1.1.4=pyh9f0ad1d_0 | |
| - mysql-common=8.0.32=h14678bc_0 | |
| - mysql-libs=8.0.32=h54cf53e_0 | |
| - ncurses=6.5=h2d0b736_3 | |
| - nest-asyncio=1.6.0=pyhd8ed1ab_1 | |
| - networkx=3.4.2=pyh267e887_2 | |
| - nspr=4.36=h5888daf_0 | |
| - nss=3.100=hca3bf56_0 | |
| - numpy=1.26.4=py310hb13e2d6_0 | |
| - ocl-icd=2.3.3=hb9d3cd8_0 | |
| - opencl-headers=2024.10.24=h5888daf_0 | |
| - openjpeg=2.5.0=hfec8fc6_2 | |
| - openssl=1.1.1w=hd590300_0 | |
| - pandas=2.2.3=py310h5eaa309_3 | |
| - parso=0.8.4=pyhd8ed1ab_1 | |
| - patsy=1.0.1=pyhd8ed1ab_1 | |
| - pcre2=10.43=hcad00b1_0 | |
| - perl=5.32.1=7_hd590300_perl5 | |
| - pexpect=4.9.0=pyhd8ed1ab_1 | |
| - pickleshare=0.7.5=pyhd8ed1ab_1004 | |
| - pillow=9.4.0=py310h023d228_1 | |
| - pip=25.1.1=pyh8b19718_0 | |
| - pixman=0.46.0=h29eaf8c_0 | |
| - platformdirs=4.3.7=pyh29332c3_0 | |
| - ply=3.11=pyhd8ed1ab_3 | |
| - prompt-toolkit=3.0.51=pyha770c72_0 | |
| - psutil=7.0.0=py310ha75aee5_0 | |
| - pthread-stubs=0.4=hb9d3cd8_1002 | |
| - ptyprocess=0.7.0=pyhd8ed1ab_1 | |
| - pulseaudio=16.1=h4ab2085_1 | |
| - pure_eval=0.2.3=pyhd8ed1ab_1 | |
| - pygments=2.19.1=pyhd8ed1ab_0 | |
| - pyparsing=3.2.3=pyhd8ed1ab_1 | |
| - pyqt=5.15.7=py310hab646b1_3 | |
| - pyqt5-sip=12.11.0=py310heca2aa9_3 | |
| - pysam=0.21.0=py310hff46b53_0 | |
| - python=3.10.8=h257c98d_0_cpython | |
| - python-dateutil=2.9.0.post0=pyhff2d567_1 | |
| - python-tzdata=2025.2=pyhd8ed1ab_0 | |
| - python_abi=3.10=7_cp310 | |
| - pytorch=2.5.1=py3.10_cuda12.1_cudnn9.1.0_0 | |
| - pytorch-cuda=12.1=ha16c6d3_6 | |
| - pytorch-mutex=1.0=cuda | |
| - pytz=2025.2=pyhd8ed1ab_0 | |
| - pyvcf3=1.0.3=pyhdfd78af_0 | |
| - pyyaml=6.0.2=py310h89163eb_2 | |
| - pyzmq=26.2.0=py310h71f11fc_1 | |
| - qhull=2020.2=h434a139_5 | |
| - qt-main=5.15.6=h18908ee_6 | |
| - readline=8.2=h8c095d6_2 | |
| - samtools=1.18=hd87286a_0 | |
| - scikit-learn=1.6.1=py310h27f47ee_0 | |
| - scipy=1.15.2=py310h1d65ade_0 | |
| - seaborn=0.13.2=hd8ed1ab_3 | |
| - seaborn-base=0.13.2=pyhd8ed1ab_3 | |
| - setuptools=80.1.0=pyhff2d567_0 | |
| - simplejson=3.20.1=py310ha75aee5_0 | |
| - sip=6.7.12=py310hc6cd4ac_0 | |
| - six=1.17.0=pyhd8ed1ab_0 | |
| - stack_data=0.6.3=pyhd8ed1ab_1 | |
| - statsmodels=0.14.4=py310hf462985_0 | |
| - tbb=2021.9.0=hf52228f_0 | |
| - threadpoolctl=3.6.0=pyhecae5ae_0 | |
| - tk=8.6.13=noxft_h4845f30_101 | |
| - toml=0.10.2=pyhd8ed1ab_1 | |
| - tomli=2.2.1=pyhd8ed1ab_1 | |
| - torchtriton=3.1.0=py310 | |
| - tornado=6.4.2=py310ha75aee5_0 | |
| - traitlets=5.14.3=pyhd8ed1ab_1 | |
| - typing_extensions=4.13.2=pyh29332c3_0 | |
| - tzdata=2025b=h78e105d_0 | |
| - unicodedata2=16.0.0=py310ha75aee5_0 | |
| - wcwidth=0.2.13=pyhd8ed1ab_1 | |
| - wheel=0.45.1=pyhd8ed1ab_1 | |
| - xcb-util=0.4.0=h516909a_0 | |
| - xcb-util-image=0.4.0=h166bdaf_0 | |
| - xcb-util-keysyms=0.4.0=h516909a_0 | |
| - xcb-util-renderutil=0.3.9=h166bdaf_0 | |
| - xcb-util-wm=0.4.1=h516909a_0 | |
| - xkeyboard-config=2.38=h0b41bf4_0 | |
| - xorg-kbproto=1.0.7=hb9d3cd8_1003 | |
| - xorg-libice=1.1.2=hb9d3cd8_0 | |
| - xorg-libsm=1.2.6=he73a12e_0 | |
| - xorg-libx11=1.8.4=h0b41bf4_0 | |
| - xorg-libxau=1.0.12=hb9d3cd8_0 | |
| - xorg-libxdmcp=1.1.5=hb9d3cd8_0 | |
| - xorg-libxext=1.3.4=h0b41bf4_2 | |
| - xorg-libxrender=0.9.10=h7f98852_1003 | |
| - xorg-renderproto=0.11.1=hb9d3cd8_1003 | |
| - xorg-xextproto=7.3.0=hb9d3cd8_1004 | |
| - xorg-xproto=7.0.31=hb9d3cd8_1008 | |
| - xz=5.2.6=h166bdaf_0 | |
| - yaml=0.2.5=h7f98852_2 | |
| - zeromq=4.3.5=h59595ed_1 | |
| - zipp=3.21.0=pyhd8ed1ab_1 | |
| - zlib=1.2.13=h4ab18f5_6 | |
| - zstd=1.5.6=ha6fb4c9_0 | |
| - pip: | |
| - accelerate==1.6.0 | |
| - aiohappyeyeballs==2.6.1 | |
| - aiohttp==3.11.18 | |
| - aiosignal==1.3.2 | |
| - annotated-types==0.7.0 | |
| - arrow==1.3.0 | |
| - async-timeout==5.0.1 | |
| - attrs==21.4.0 | |
| - binaryornot==0.4.4 | |
| - chardet==5.2.0 | |
| - charset-normalizer==3.4.2 | |
| - click==8.1.8 | |
| - colorlog==6.9.0 | |
| - cookiecutter==2.6.0 | |
| - deprecation==2.1.0 | |
| - discrete-key-value-bottleneck-pytorch==0.1.1 | |
| - docker-pycreds==0.4.0 | |
| - einops==0.8.1 | |
| - einx==0.3.0 | |
| - enformer-pytorch==0.8.10 | |
| - frozendict==2.4.6 | |
| - frozenlist==1.6.0 | |
| - future==1.0.0 | |
| - gitdb==4.0.12 | |
| - gitpython==3.1.44 | |
| - huggingface-hub==0.30.2 | |
| - idna==3.10 | |
| - kipoi==0.8.6 | |
| - kipoi-conda==0.3.1 | |
| - kipoi-utils==0.7.7 | |
| - kipoiseq==0.7.1 | |
| - lightning==2.5.1.post0 | |
| - lightning-utilities==0.14.3 | |
| - markdown-it-py==3.0.0 | |
| - mdurl==0.1.2 | |
| - multidict==6.4.3 | |
| - natsort==8.4.0 | |
| - ncls==0.0.68 | |
| - packaging==24.2 | |
| - polars==1.29.0 | |
| - propcache==0.3.1 | |
| - protobuf==6.30.2 | |
| - pydantic==2.11.4 | |
| - pydantic-core==2.33.2 | |
| - pyfaidx==0.8.1.4 | |
| - pyranges==0.1.4 | |
| - python-slugify==8.0.4 | |
| - pytorch-lightning==2.5.1.post0 | |
| - rdkit-pypi==2022.9.5 | |
| - regex==2024.11.6 | |
| - related==0.7.3 | |
| - requests==2.32.3 | |
| - rich==14.0.0 | |
| - safetensors==0.5.3 | |
| - sentry-sdk==2.27.0 | |
| - setproctitle==1.3.6 | |
| - smmap==5.0.2 | |
| - sorted-nearest==0.0.39 | |
| - sympy==1.13.1 | |
| - tabulate==0.9.0 | |
| - text-unidecode==1.3 | |
| - tinydb==4.8.2 | |
| - tokenizers==0.21.1 | |
| - torchmetrics==1.7.1 | |
| - tqdm==4.67.1 | |
| - transformers==4.51.3 | |
| - types-python-dateutil==2.9.0.20241206 | |
| - typing-inspection==0.4.0 | |
| - urllib3==2.4.0 | |
| - vector-quantize-pytorch==1.22.16 | |
| - wandb==0.19.10 | |
| - yarl==1.20.0 | |