locus_to_gene / config.json
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chore: update model base model for 2025-02 run
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{
"sklearn": {
"columns": [
"studyLocusId",
"geneId",
"goldStandardSet",
"traitFromSourceMappedId",
"eQtlColocClppMaximum",
"pQtlColocClppMaximum",
"sQtlColocClppMaximum",
"eQtlColocH4Maximum",
"pQtlColocH4Maximum",
"sQtlColocH4Maximum",
"eQtlColocClppMaximumNeighbourhood",
"pQtlColocClppMaximumNeighbourhood",
"sQtlColocClppMaximumNeighbourhood",
"eQtlColocH4MaximumNeighbourhood",
"pQtlColocH4MaximumNeighbourhood",
"sQtlColocH4MaximumNeighbourhood",
"distanceSentinelFootprint",
"distanceSentinelFootprintNeighbourhood",
"distanceFootprintMean",
"distanceFootprintMeanNeighbourhood",
"distanceTssMean",
"distanceTssMeanNeighbourhood",
"distanceSentinelTss",
"distanceSentinelTssNeighbourhood",
"vepMaximum",
"vepMaximumNeighbourhood",
"vepMean",
"vepMeanNeighbourhood",
"geneCount500kb",
"proteinGeneCount500kb",
"credibleSetConfidence"
],
"environment": [
"scikit-learn=1.6.1"
],
"example_input": {
"credibleSetConfidence": [
0.75,
0.75,
0.75
],
"distanceFootprintMean": [
0.9722118973731995,
0.9389963746070862,
0.96164870262146
],
"distanceFootprintMeanNeighbourhood": [
0.9722118973731995,
0.9389963746070862,
0.96164870262146
],
"distanceSentinelFootprint": [
0.9722118973731995,
0.9389963746070862,
0.96164870262146
],
"distanceSentinelFootprintNeighbourhood": [
0.9722118973731995,
0.9389963746070862,
0.96164870262146
],
"distanceSentinelTss": [
0.9722118973731995,
0.9389963746070862,
0.9519312381744385
],
"distanceSentinelTssNeighbourhood": [
0.9722750186920166,
0.9390574097633362,
0.9519931077957153
],
"distanceTssMean": [
0.9722118973731995,
0.9389963746070862,
0.9519312381744385
],
"distanceTssMeanNeighbourhood": [
0.9722750186920166,
0.9390574097633362,
0.9519931077957153
],
"eQtlColocClppMaximum": [
0.0,
0.0,
0.0
],
"eQtlColocClppMaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"eQtlColocH4Maximum": [
0.0,
0.0,
0.0
],
"eQtlColocH4MaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"geneCount500kb": [
15.0,
15.0,
15.0
],
"geneId": [
"ENSG00000116133",
"ENSG00000162396",
"ENSG00000162398"
],
"goldStandardSet": [
"negative",
"negative",
"negative"
],
"pQtlColocClppMaximum": [
0.0,
0.0,
0.0
],
"pQtlColocClppMaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"pQtlColocH4Maximum": [
0.0,
0.0,
0.0
],
"pQtlColocH4MaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"proteinGeneCount500kb": [
7.0,
7.0,
7.0
],
"sQtlColocClppMaximum": [
0.0,
0.0,
0.0
],
"sQtlColocClppMaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"sQtlColocH4Maximum": [
0.0,
0.0,
0.0
],
"sQtlColocH4MaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"studyLocusId": [
"02c442ea4fa5ab80586a6d1ff6afa843",
"02c442ea4fa5ab80586a6d1ff6afa843",
"02c442ea4fa5ab80586a6d1ff6afa843"
],
"traitFromSourceMappedId": [
"EFO_0004611",
"EFO_0004611",
"EFO_0004611"
],
"vepMaximum": [
0.0,
0.0,
0.0
],
"vepMaximumNeighbourhood": [
0.0,
0.0,
0.0
],
"vepMean": [
0.0,
0.0,
0.0
],
"vepMeanNeighbourhood": [
0.0,
0.0,
0.0
]
},
"model": {
"file": "classifier.skops"
},
"model_format": "skops",
"task": "tabular-classification"
}
}