lixin12345
commited on
Update README.md
Browse files
README.md
CHANGED
@@ -1,3 +1,117 @@
|
|
1 |
-
|
2 |
-
|
3 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
|
2 |
+
### Usage
|
3 |
+
|
4 |
+
```python
|
5 |
+
|
6 |
+
from transformers import AutoTokenizer, AutoModelForTokenClassification
|
7 |
+
import torch
|
8 |
+
|
9 |
+
class NER:
|
10 |
+
"""
|
11 |
+
实体命名实体识别
|
12 |
+
"""
|
13 |
+
def __init__(self,model_path) -> None:
|
14 |
+
"""
|
15 |
+
Args:
|
16 |
+
model_path:模型地址
|
17 |
+
"""
|
18 |
+
|
19 |
+
self.model_path = model_path
|
20 |
+
self.tokenizer = AutoTokenizer.from_pretrained(model_path)
|
21 |
+
self.model = AutoModelForTokenClassification.from_pretrained(model_path)
|
22 |
+
|
23 |
+
def ner(self,sentence:str) -> list:
|
24 |
+
"""
|
25 |
+
命名实体识别
|
26 |
+
Args:
|
27 |
+
sentence:要识别的句子
|
28 |
+
Return:
|
29 |
+
实体列表:[{'type':'LOC','tokens':[...]},...]
|
30 |
+
"""
|
31 |
+
ans = []
|
32 |
+
for i in range(0,len(sentence),500):
|
33 |
+
ans = ans + self._ner(sentence[i:i+500])
|
34 |
+
return ans
|
35 |
+
|
36 |
+
def _ner(self,sentence:str) -> list:
|
37 |
+
if len(sentence) == 0: return []
|
38 |
+
inputs = self.tokenizer(
|
39 |
+
sentence, add_special_tokens=True, return_tensors="pt"
|
40 |
+
)
|
41 |
+
|
42 |
+
if torch.cuda.is_available():
|
43 |
+
self.model = self.model.to(torch.device('cuda:0'))
|
44 |
+
for key in inputs:
|
45 |
+
inputs[key] = inputs[key].to(torch.device('cuda:0'))
|
46 |
+
|
47 |
+
with torch.no_grad():
|
48 |
+
logits = self.model(**inputs).logits
|
49 |
+
predicted_token_class_ids = logits.argmax(-1)
|
50 |
+
predicted_tokens_classes = [self.model.config.id2label[t.item()] for t in predicted_token_class_ids[0]]
|
51 |
+
entities = []
|
52 |
+
entity = {}
|
53 |
+
for idx, token in enumerate(self.tokenizer.tokenize(sentence,add_special_tokens=True)):
|
54 |
+
if 'B-' in predicted_tokens_classes[idx] or 'S-' in predicted_tokens_classes[idx]:
|
55 |
+
if len(entity) != 0:
|
56 |
+
entities.append(entity)
|
57 |
+
entity = {}
|
58 |
+
entity['type'] = predicted_tokens_classes[idx].replace('B-','').replace('S-','')
|
59 |
+
entity['tokens'] = [token]
|
60 |
+
elif 'I-' in predicted_tokens_classes[idx] or 'E-' in predicted_tokens_classes[idx] or 'M-' in predicted_tokens_classes[idx]:
|
61 |
+
if len(entity) == 0:
|
62 |
+
entity['type'] = predicted_tokens_classes[idx].replace('I-','').replace('E-','').replace('M-','')
|
63 |
+
entity['tokens'] = []
|
64 |
+
entity['tokens'].append(token)
|
65 |
+
else:
|
66 |
+
if len(entity) != 0:
|
67 |
+
entities.append(entity)
|
68 |
+
entity = {}
|
69 |
+
if len(entity) > 0:
|
70 |
+
entities.append(entity)
|
71 |
+
return entities
|
72 |
+
|
73 |
+
ner_model = NER('lixin12345/chinese-medical-ner')
|
74 |
+
text = """
|
75 |
+
患者既往慢阻肺多年;冠心病史6年,平素规律服用心可舒、保心丸等控制可;双下肢静脉血栓3年,保守治疗效果可;左侧腹股沟斜疝无张力修补术后2年。否认"高血压、糖尿病"等慢性病病史,否认"肝炎、结核"等传染病病史及其密切接触史,否认其他手术、重大外伤、输血史,否认"食物、药物、其他"等过敏史,预防接种史随社会。
|
76 |
+
"""
|
77 |
+
ans = ner_model.ner(text)
|
78 |
+
# ans
|
79 |
+
|
80 |
+
# DiseaseNameOrComprehensiveCertificate
|
81 |
+
# 慢阻肺
|
82 |
+
|
83 |
+
# DiseaseNameOrComprehensiveCertificate
|
84 |
+
# 冠心病
|
85 |
+
|
86 |
+
# Drug
|
87 |
+
# 心可舒
|
88 |
+
|
89 |
+
# Drug
|
90 |
+
# 保心丸
|
91 |
+
|
92 |
+
# DiseaseNameOrComprehensiveCertificate
|
93 |
+
# 双下肢静脉血栓
|
94 |
+
|
95 |
+
# DiseaseNameOrComprehensiveCertificate
|
96 |
+
# 左侧腹股沟斜疝无张力修补术
|
97 |
+
|
98 |
+
# DiseaseNameOrComprehensiveCertificate
|
99 |
+
# 高血压
|
100 |
+
|
101 |
+
# DiseaseNameOrComprehensiveCertificate
|
102 |
+
# 糖尿病
|
103 |
+
|
104 |
+
# DiseaseNameOrComprehensiveCertificate
|
105 |
+
# 肝炎
|
106 |
+
|
107 |
+
# DiseaseNameOrComprehensiveCertificate
|
108 |
+
# 结核
|
109 |
+
```
|
110 |
+
|
111 |
+
### Source
|
112 |
+
|
113 |
+
From hit [wi](https://wi.hit.edu.cn/gk.htm)
|
114 |
+
|
115 |
+
---
|
116 |
+
license: apache-2.0
|
117 |
+
---
|