pfam_4class_seq

README.md

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+---
+tags:
+- generated_from_trainer
+metrics:
+- accuracy
+model-index:
+- name: esm2_t33_650M_UR50D-uniprot-7class-uniprot-7class
+  results: []
+---
+
+<!-- This model card has been generated automatically according to the information the Trainer had access to. You
+should probably proofread and complete it, then remove this comment. -->
+
+# esm2_t33_650M_UR50D-uniprot-7class-uniprot-7class
+
+This model was trained from scratch on the None dataset.
+It achieves the following results on the evaluation set:
+- Loss: 0.1818
+- Accuracy: 0.9593
+
+## Model description
+
+More information needed
+
+## Intended uses & limitations
+
+More information needed
+
+## Training and evaluation data
+
+More information needed
+
+## Training procedure
+
+### Training hyperparameters
+
+The following hyperparameters were used during training:
+- learning_rate: 2e-05
+- train_batch_size: 8
+- eval_batch_size: 8
+- seed: 42
+- gradient_accumulation_steps: 16
+- total_train_batch_size: 128
+- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
+- lr_scheduler_type: linear
+- num_epochs: 10
+
+### Training results
+
+| Training Loss | Epoch  | Step | Validation Loss | Accuracy |
+|:-------------:|:------:|:----:|:---------------:|:--------:|
+| No log        | 0.9846 | 4    | 0.3113          | 0.9244   |
+| No log        | 1.9692 | 8    | 0.2729          | 0.9244   |
+| No log        | 2.9538 | 12   | 0.2448          | 0.9360   |
+| No log        | 3.9385 | 16   | 0.2138          | 0.9477   |
+| No log        | 4.9231 | 20   | 0.1997          | 0.9651   |
+| No log        | 5.9077 | 24   | 0.1934          | 0.9593   |
+| No log        | 6.8923 | 28   | 0.1901          | 0.9593   |
+| No log        | 7.8769 | 32   | 0.1847          | 0.9593   |
+| No log        | 8.8615 | 36   | 0.1824          | 0.9593   |
+| No log        | 9.8462 | 40   | 0.1818          | 0.9593   |
+
+
+### Framework versions
+
+- Transformers 4.40.2
+- Pytorch 2.3.0+cu121
+- Datasets 2.19.1
+- Tokenizers 0.19.1

config.json

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+{
+  "_name_or_path": "esm2_t33_650M_UR50D-uniprot-7class",
+  "architectures": [
+    "EsmForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.0,
+  "classifier_dropout": null,
+  "emb_layer_norm_before": false,
+  "esmfold_config": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.0,
+  "hidden_size": 1280,
+  "id2label": {
+    "0": "LABEL_0",
+    "1": "LABEL_1",
+    "2": "LABEL_2",
+    "3": "LABEL_3"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 5120,
+  "is_folding_model": false,
+  "label2id": {
+    "LABEL_0": 0,
+    "LABEL_1": 1,
+    "LABEL_2": 2,
+    "LABEL_3": 3
+  },
+  "layer_norm_eps": 1e-05,
+  "mask_token_id": 32,
+  "max_position_embeddings": 1026,
+  "model_type": "esm",
+  "num_attention_heads": 20,
+  "num_hidden_layers": 33,
+  "pad_token_id": 1,
+  "position_embedding_type": "rotary",
+  "problem_type": "single_label_classification",
+  "token_dropout": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.40.2",
+  "use_cache": true,
+  "vocab_list": null,
+  "vocab_size": 33
+}

model.safetensors

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+version https://git-lfs.github.com/spec/v1
+oid sha256:69069be6941b3c44a2632d73e51c872ed9259daae8f2fb9a4b1fe6310a963ba3
+size 2609508148

special_tokens_map.json

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+{
+  "cls_token": {
+    "content": "<cls>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "eos_token": {
+    "content": "<eos>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "mask_token": {
+    "content": "<mask>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "<pad>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": {
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

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+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "<cls>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "<pad>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "<eos>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "<unk>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "32": {
+      "content": "<mask>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "<cls>",
+  "eos_token": "<eos>",
+  "mask_token": "<mask>",
+  "model_max_length": 1000000000000000019884624838656,
+  "pad_token": "<pad>",
+  "tokenizer_class": "EsmTokenizer",
+  "unk_token": "<unk>"
+}

training_args.bin

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+version https://git-lfs.github.com/spec/v1
+oid sha256:f838c998be7d1ac65043f4547a42ee3fbd84175cde173939a8bc17025202668e
+size 5048

vocab.txt

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+<cls>
+<pad>
+<eos>
+<unk>
+L
+A
+G
+V
+S
+E
+R
+T
+I
+D
+P
+K
+Q
+N
+F
+Y
+M
+H
+W
+C
+X
+B
+U
+Z
+O
+.
+-
+<null_1>
+<mask>