Add missing protein_seq value so code block works end-to-end (#4)
Browse files- Add missing protein_seq value so code block works end-to-end (d325f39002232457aa9437f73d37cfbfd17194de)
Co-authored-by: Dean Elzinga <[email protected]>
README.md
CHANGED
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@@ -54,6 +54,9 @@ model.eval()
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# Load Tokenizer
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tokenizer_op = ModularTokenizerOp.from_pretrained("ibm/biomed.omics.bl.sm.ma-ted-458m.protein_solubility")
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# convert to MAMMAL style
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sample_dict = {"protein_seq": protein_seq}
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sample_dict = ProteinSolubilityTask.data_preprocessing(
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# Load Tokenizer
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tokenizer_op = ModularTokenizerOp.from_pretrained("ibm/biomed.omics.bl.sm.ma-ted-458m.protein_solubility")
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# protein_seq: FASTA sequence of a protein, input for the model to predict its solubility
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protein_seq = "NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC"
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# convert to MAMMAL style
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sample_dict = {"protein_seq": protein_seq}
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sample_dict = ProteinSolubilityTask.data_preprocessing(
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