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- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_18_18_49.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_24_00_11_19.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_48_26.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_20_19_27.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_47_32.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_20_14_28.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_45_57.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv +104 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt +28 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_24_00_12_00.txt +32 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv +41 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json +132 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv +10 -0
- baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv +104 -0
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv
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/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
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+
nnUNetTrainerSequential
|
54 |
+
2d
|
55 |
+
Task121_UCL
|
56 |
+
Task121_UCL
|
57 |
+
0
|
58 |
+
Task121_UCL
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7608 +/- 0.0074
|
63 |
+
76.08% +/- 0.74%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerSequential
|
67 |
+
2d
|
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Task121_UCL
|
69 |
+
Task121_UCL
|
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0
|
71 |
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Task121_UCL
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8641 +/- 0.0048
|
76 |
+
86.41% +/- 0.48%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerSequential
|
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+
2d
|
81 |
+
Task121_UCL
|
82 |
+
Task121_UCL
|
83 |
+
0
|
84 |
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Task121_UCL
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.7787 +/- 0.0150
|
89 |
+
77.87% +/- 1.50%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerSequential
|
93 |
+
2d
|
94 |
+
Task121_UCL
|
95 |
+
Task121_UCL
|
96 |
+
0
|
97 |
+
Task121_UCL
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8755 +/- 0.0095
|
102 |
+
87.55% +/- 0.95%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
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|
1 |
+
Evaluation performed after Epoch 50, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerSequential model trained on Task121_UCL has been used for this evaluation with the Task121_UCL head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.7216980457305908 +/- 0.011046600466457779
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.8383080959320068 +/- 0.007484230162726026
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.6791614443063736 +/- 0.015639917452228213
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8088269382715225 +/- 0.010989750969014415
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7607880433400472 +/- 0.007390005477683663
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8641248742739359 +/- 0.004778980946586157
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.7787193059921265 +/- 0.014966212309353286
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8755156823566982 +/- 0.009487025181823762
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_18_18_49.txt
ADDED
@@ -0,0 +1,32 @@
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|
1 |
+
Starting...
|
2 |
+
2024-10-23 18:18:49.345273: The nnUNetTrainerSequential model trained on Task121_UCL will be used for this evaluation with the Task121_UCL head.
|
3 |
+
2024-10-23 18:18:49.345482: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2024-10-23 18:18:49.345519: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2024-10-23 18:18:49.348799: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2024-10-23 18:18:49.348916: The split file contains 5 splits.
|
8 |
+
2024-10-23 18:18:49.348971: Desired fold for training: 0
|
9 |
+
2024-10-23 18:18:49.349011: This split has 10 training and 3 validation cases.
|
10 |
+
2024-10-23 18:18:50.941587: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2024-10-23 18:20:18.823312: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2024-10-23 18:20:18.823568: The split file contains 5 splits.
|
13 |
+
2024-10-23 18:20:18.823621: Desired fold for training: 0
|
14 |
+
2024-10-23 18:20:18.823665: This split has 15 training and 4 validation cases.
|
15 |
+
2024-10-23 18:20:25.730654: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2024-10-23 18:21:09.637061: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2024-10-23 18:21:09.637411: The split file contains 5 splits.
|
18 |
+
2024-10-23 18:21:09.637493: Desired fold for training: 0
|
19 |
+
2024-10-23 18:21:09.637554: This split has 24 training and 6 validation cases.
|
20 |
+
2024-10-23 18:21:13.318519: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2024-10-23 18:21:56.121592: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2024-10-23 18:21:56.122041: The split file contains 5 splits.
|
23 |
+
2024-10-23 18:21:56.122129: Desired fold for training: 0
|
24 |
+
2024-10-23 18:21:56.122196: This split has 25 training and 7 validation cases.
|
25 |
+
2024-10-23 18:22:01.424330: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2024-10-23 18:22:39.727110: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2024-10-23 18:22:39.727373: Summarizing the results (calculate mean and std)..
|
29 |
+
2024-10-23 18:22:39.868487: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2024-10-23 18:22:39.868589: The Evaluation took 230.52 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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|
1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_50 Task121_UCL Case01 mask_1 IoU 0.7314256429672241
|
3 |
+
epoch_50 Task121_UCL Case01 mask_1 Dice 0.8448825478553772
|
4 |
+
epoch_50 Task121_UCL Case32 mask_1 IoU 0.7274206280708313
|
5 |
+
epoch_50 Task121_UCL Case32 mask_1 Dice 0.8422043919563293
|
6 |
+
epoch_50 Task121_UCL Case34 mask_1 IoU 0.706247866153717
|
7 |
+
epoch_50 Task121_UCL Case34 mask_1 Dice 0.827837347984314
|
8 |
+
epoch_50 Task122_I2CVB Case03 mask_1 IoU 0.6658427715301514
|
9 |
+
epoch_50 Task122_I2CVB Case03 mask_1 Dice 0.7994065284729004
|
10 |
+
epoch_50 Task122_I2CVB Case08 mask_1 IoU 0.6742446422576904
|
11 |
+
epoch_50 Task122_I2CVB Case08 mask_1 Dice 0.8054314255714417
|
12 |
+
epoch_50 Task122_I2CVB Case13 mask_1 IoU 0.670806348323822
|
13 |
+
epoch_50 Task122_I2CVB Case13 mask_1 Dice 0.8029731512069702
|
14 |
+
epoch_50 Task122_I2CVB Case15 mask_1 IoU 0.7057520151138306
|
15 |
+
epoch_50 Task122_I2CVB Case15 mask_1 Dice 0.8274966478347778
|
16 |
+
epoch_50 Task123_ISBI Case03 mask_1 IoU 0.7648935317993164
|
17 |
+
epoch_50 Task123_ISBI Case03 mask_1 Dice 0.8667871356010437
|
18 |
+
epoch_50 Task123_ISBI Case08 mask_1 IoU 0.7688853144645691
|
19 |
+
epoch_50 Task123_ISBI Case08 mask_1 Dice 0.8693444132804871
|
20 |
+
epoch_50 Task123_ISBI Case12 mask_1 IoU 0.7636995315551758
|
21 |
+
epoch_50 Task123_ISBI Case12 mask_1 Dice 0.8660199642181396
|
22 |
+
epoch_50 Task123_ISBI Case15 mask_1 IoU 0.766016960144043
|
23 |
+
epoch_50 Task123_ISBI Case15 mask_1 Dice 0.867508053779602
|
24 |
+
epoch_50 Task123_ISBI Case18 mask_1 IoU 0.751737117767334
|
25 |
+
epoch_50 Task123_ISBI Case18 mask_1 Dice 0.8582761883735657
|
26 |
+
epoch_50 Task123_ISBI Case26 mask_1 IoU 0.749495804309845
|
27 |
+
epoch_50 Task123_ISBI Case26 mask_1 Dice 0.8568134903907776
|
28 |
+
epoch_50 Task124_DecathProst Case00 mask_1 IoU 0.7955697774887085
|
29 |
+
epoch_50 Task124_DecathProst Case00 mask_1 Dice 0.8861474394798279
|
30 |
+
epoch_50 Task124_DecathProst Case04 mask_1 IoU 0.7908786535263062
|
31 |
+
epoch_50 Task124_DecathProst Case04 mask_1 Dice 0.8832297921180725
|
32 |
+
epoch_50 Task124_DecathProst Case14 mask_1 IoU 0.7870696187019348
|
33 |
+
epoch_50 Task124_DecathProst Case14 mask_1 Dice 0.8808494210243225
|
34 |
+
epoch_50 Task124_DecathProst Case20 mask_1 IoU 0.7664221525192261
|
35 |
+
epoch_50 Task124_DecathProst Case20 mask_1 Dice 0.8677678108215332
|
36 |
+
epoch_50 Task124_DecathProst Case25 mask_1 IoU 0.7917458415031433
|
37 |
+
epoch_50 Task124_DecathProst Case25 mask_1 Dice 0.8837702870368958
|
38 |
+
epoch_50 Task124_DecathProst Case31 mask_1 IoU 0.7628431916236877
|
39 |
+
epoch_50 Task124_DecathProst Case31 mask_1 Dice 0.8654691576957703
|
40 |
+
epoch_50 Task124_DecathProst Case42 mask_1 IoU 0.7565059065818787
|
41 |
+
epoch_50 Task124_DecathProst Case42 mask_1 Dice 0.8613758683204651
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL/Task121_UCL/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_50": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
+
"IoU": 0.7314256429672241,
|
7 |
+
"Dice": 0.8448825478553772
|
8 |
+
}
|
9 |
+
},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.7274206280708313,
|
13 |
+
"Dice": 0.8422043919563293
|
14 |
+
}
|
15 |
+
},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.706247866153717,
|
19 |
+
"Dice": 0.827837347984314
|
20 |
+
}
|
21 |
+
}
|
22 |
+
},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.6658427715301514,
|
27 |
+
"Dice": 0.7994065284729004
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.6742446422576904,
|
33 |
+
"Dice": 0.8054314255714417
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.670806348323822,
|
39 |
+
"Dice": 0.8029731512069702
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.7057520151138306,
|
45 |
+
"Dice": 0.8274966478347778
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
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"IoU": 0.7648935317993164,
|
53 |
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"Dice": 0.8667871356010437
|
54 |
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}
|
55 |
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},
|
56 |
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"Case08": {
|
57 |
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"mask_1": {
|
58 |
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"IoU": 0.7688853144645691,
|
59 |
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"Dice": 0.8693444132804871
|
60 |
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}
|
61 |
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},
|
62 |
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"Case12": {
|
63 |
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"mask_1": {
|
64 |
+
"IoU": 0.7636995315551758,
|
65 |
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"Dice": 0.8660199642181396
|
66 |
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}
|
67 |
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},
|
68 |
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"Case15": {
|
69 |
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"mask_1": {
|
70 |
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"IoU": 0.766016960144043,
|
71 |
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"Dice": 0.867508053779602
|
72 |
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}
|
73 |
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},
|
74 |
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"Case18": {
|
75 |
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"mask_1": {
|
76 |
+
"IoU": 0.751737117767334,
|
77 |
+
"Dice": 0.8582761883735657
|
78 |
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}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
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"IoU": 0.749495804309845,
|
83 |
+
"Dice": 0.8568134903907776
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.7955697774887085,
|
91 |
+
"Dice": 0.8861474394798279
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.7908786535263062,
|
97 |
+
"Dice": 0.8832297921180725
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.7870696187019348,
|
103 |
+
"Dice": 0.8808494210243225
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.7664221525192261,
|
109 |
+
"Dice": 0.8677678108215332
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.7917458415031433,
|
115 |
+
"Dice": 0.8837702870368958
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7628431916236877,
|
121 |
+
"Dice": 0.8654691576957703
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.7565059065818787,
|
127 |
+
"Dice": 0.8613758683204651
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
|
8 |
+
29971872
|
9 |
+
114.334
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
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|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task121_UCL
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.7253 +/- 0.0102
|
12 |
+
72.53% +/- 1.02%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerEWC
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task121_UCL
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.8408 +/- 0.0069
|
24 |
+
84.08% +/- 0.69%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerEWC
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.6904 +/- 0.0146
|
37 |
+
69.04% +/- 1.46%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerEWC
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8168 +/- 0.0103
|
50 |
+
81.68% +/- 1.03%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerEWC
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7797 +/- 0.0050
|
63 |
+
77.97% +/- 0.50%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerEWC
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8762 +/- 0.0032
|
76 |
+
87.62% +/- 0.32%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerEWC
|
80 |
+
2d
|
81 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.7763 +/- 0.0067
|
89 |
+
77.63% +/- 0.67%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerEWC
|
93 |
+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8740 +/- 0.0042
|
102 |
+
87.40% +/- 0.42%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Evaluation performed after Epoch 250, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.725331981976827 +/- 0.01022047233686863
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.8407620191574097 +/- 0.00688519732916141
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.6904028505086899 +/- 0.014619795272973588
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8167613744735718 +/- 0.010257847355083368
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7797381778558096 +/- 0.00501543466695585
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8762302895387014 +/- 0.0031643372020166045
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.7762761882373265 +/- 0.006661105591470465
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8740331530570984 +/- 0.004218117421964211
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_24_00_11_19.txt
ADDED
@@ -0,0 +1,32 @@
|
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|
|
|
1 |
+
Starting...
|
2 |
+
2024-10-24 00:11:19.062857: The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2024-10-24 00:11:19.063079: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2024-10-24 00:11:19.063115: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2024-10-24 00:11:19.065813: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2024-10-24 00:11:19.065898: The split file contains 5 splits.
|
8 |
+
2024-10-24 00:11:19.065936: Desired fold for training: 0
|
9 |
+
2024-10-24 00:11:19.065965: This split has 10 training and 3 validation cases.
|
10 |
+
2024-10-24 00:11:20.144503: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2024-10-24 00:11:29.910028: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2024-10-24 00:11:29.910975: The split file contains 5 splits.
|
13 |
+
2024-10-24 00:11:29.911176: Desired fold for training: 0
|
14 |
+
2024-10-24 00:11:29.911233: This split has 15 training and 4 validation cases.
|
15 |
+
2024-10-24 00:11:32.587844: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2024-10-24 00:11:38.120471: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2024-10-24 00:11:38.120651: The split file contains 5 splits.
|
18 |
+
2024-10-24 00:11:38.120693: Desired fold for training: 0
|
19 |
+
2024-10-24 00:11:38.120723: This split has 24 training and 6 validation cases.
|
20 |
+
2024-10-24 00:11:40.446798: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2024-10-24 00:11:45.787484: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2024-10-24 00:11:45.787793: The split file contains 5 splits.
|
23 |
+
2024-10-24 00:11:45.787852: Desired fold for training: 0
|
24 |
+
2024-10-24 00:11:45.787886: This split has 25 training and 7 validation cases.
|
25 |
+
2024-10-24 00:11:48.241759: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2024-10-24 00:11:53.689679: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2024-10-24 00:11:53.690497: Summarizing the results (calculate mean and std)..
|
29 |
+
2024-10-24 00:11:53.716891: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2024-10-24 00:11:53.717036: The Evaluation took 34.65 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_250 Task121_UCL Case01 mask_1 IoU 0.7115181088447571
|
3 |
+
epoch_250 Task121_UCL Case01 mask_1 Dice 0.8314467668533325
|
4 |
+
epoch_250 Task121_UCL Case32 mask_1 IoU 0.735922634601593
|
5 |
+
epoch_250 Task121_UCL Case32 mask_1 Dice 0.8478749394416809
|
6 |
+
epoch_250 Task121_UCL Case34 mask_1 IoU 0.7285552024841309
|
7 |
+
epoch_250 Task121_UCL Case34 mask_1 Dice 0.8429643511772156
|
8 |
+
epoch_250 Task122_I2CVB Case03 mask_1 IoU 0.6925685405731201
|
9 |
+
epoch_250 Task122_I2CVB Case03 mask_1 Dice 0.8183639645576477
|
10 |
+
epoch_250 Task122_I2CVB Case08 mask_1 IoU 0.6685339212417603
|
11 |
+
epoch_250 Task122_I2CVB Case08 mask_1 Dice 0.8013429045677185
|
12 |
+
epoch_250 Task122_I2CVB Case13 mask_1 IoU 0.6908230185508728
|
13 |
+
epoch_250 Task122_I2CVB Case13 mask_1 Dice 0.8171440958976746
|
14 |
+
epoch_250 Task122_I2CVB Case15 mask_1 IoU 0.7096859216690063
|
15 |
+
epoch_250 Task122_I2CVB Case15 mask_1 Dice 0.8301945328712463
|
16 |
+
epoch_250 Task123_ISBI Case03 mask_1 IoU 0.7778480052947998
|
17 |
+
epoch_250 Task123_ISBI Case03 mask_1 Dice 0.8750444650650024
|
18 |
+
epoch_250 Task123_ISBI Case08 mask_1 IoU 0.7888094782829285
|
19 |
+
epoch_250 Task123_ISBI Case08 mask_1 Dice 0.8819379806518555
|
20 |
+
epoch_250 Task123_ISBI Case12 mask_1 IoU 0.7804704904556274
|
21 |
+
epoch_250 Task123_ISBI Case12 mask_1 Dice 0.8767014145851135
|
22 |
+
epoch_250 Task123_ISBI Case15 mask_1 IoU 0.7717055678367615
|
23 |
+
epoch_250 Task123_ISBI Case15 mask_1 Dice 0.8711442351341248
|
24 |
+
epoch_250 Task123_ISBI Case18 mask_1 IoU 0.7798032164573669
|
25 |
+
epoch_250 Task123_ISBI Case18 mask_1 Dice 0.8762802481651306
|
26 |
+
epoch_250 Task123_ISBI Case26 mask_1 IoU 0.779792308807373
|
27 |
+
epoch_250 Task123_ISBI Case26 mask_1 Dice 0.8762733936309814
|
28 |
+
epoch_250 Task124_DecathProst Case00 mask_1 IoU 0.7730327248573303
|
29 |
+
epoch_250 Task124_DecathProst Case00 mask_1 Dice 0.8719892501831055
|
30 |
+
epoch_250 Task124_DecathProst Case04 mask_1 IoU 0.7658898830413818
|
31 |
+
epoch_250 Task124_DecathProst Case04 mask_1 Dice 0.8674265742301941
|
32 |
+
epoch_250 Task124_DecathProst Case14 mask_1 IoU 0.7742968201637268
|
33 |
+
epoch_250 Task124_DecathProst Case14 mask_1 Dice 0.8727928996086121
|
34 |
+
epoch_250 Task124_DecathProst Case20 mask_1 IoU 0.7755655646324158
|
35 |
+
epoch_250 Task124_DecathProst Case20 mask_1 Dice 0.8735983371734619
|
36 |
+
epoch_250 Task124_DecathProst Case25 mask_1 IoU 0.7847083210945129
|
37 |
+
epoch_250 Task124_DecathProst Case25 mask_1 Dice 0.8793686628341675
|
38 |
+
epoch_250 Task124_DecathProst Case31 mask_1 IoU 0.7867608666419983
|
39 |
+
epoch_250 Task124_DecathProst Case31 mask_1 Dice 0.8806560039520264
|
40 |
+
epoch_250 Task124_DecathProst Case42 mask_1 IoU 0.7736791372299194
|
41 |
+
epoch_250 Task124_DecathProst Case42 mask_1 Dice 0.8724003434181213
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_250": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
+
"IoU": 0.7115181088447571,
|
7 |
+
"Dice": 0.8314467668533325
|
8 |
+
}
|
9 |
+
},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.735922634601593,
|
13 |
+
"Dice": 0.8478749394416809
|
14 |
+
}
|
15 |
+
},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.7285552024841309,
|
19 |
+
"Dice": 0.8429643511772156
|
20 |
+
}
|
21 |
+
}
|
22 |
+
},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.6925685405731201,
|
27 |
+
"Dice": 0.8183639645576477
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.6685339212417603,
|
33 |
+
"Dice": 0.8013429045677185
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.6908230185508728,
|
39 |
+
"Dice": 0.8171440958976746
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.7096859216690063,
|
45 |
+
"Dice": 0.8301945328712463
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
52 |
+
"IoU": 0.7778480052947998,
|
53 |
+
"Dice": 0.8750444650650024
|
54 |
+
}
|
55 |
+
},
|
56 |
+
"Case08": {
|
57 |
+
"mask_1": {
|
58 |
+
"IoU": 0.7888094782829285,
|
59 |
+
"Dice": 0.8819379806518555
|
60 |
+
}
|
61 |
+
},
|
62 |
+
"Case12": {
|
63 |
+
"mask_1": {
|
64 |
+
"IoU": 0.7804704904556274,
|
65 |
+
"Dice": 0.8767014145851135
|
66 |
+
}
|
67 |
+
},
|
68 |
+
"Case15": {
|
69 |
+
"mask_1": {
|
70 |
+
"IoU": 0.7717055678367615,
|
71 |
+
"Dice": 0.8711442351341248
|
72 |
+
}
|
73 |
+
},
|
74 |
+
"Case18": {
|
75 |
+
"mask_1": {
|
76 |
+
"IoU": 0.7798032164573669,
|
77 |
+
"Dice": 0.8762802481651306
|
78 |
+
}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
+
"IoU": 0.779792308807373,
|
83 |
+
"Dice": 0.8762733936309814
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.7730327248573303,
|
91 |
+
"Dice": 0.8719892501831055
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.7658898830413818,
|
97 |
+
"Dice": 0.8674265742301941
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.7742968201637268,
|
103 |
+
"Dice": 0.8727928996086121
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.7755655646324158,
|
109 |
+
"Dice": 0.8735983371734619
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.7847083210945129,
|
115 |
+
"Dice": 0.8793686628341675
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7867608666419983,
|
121 |
+
"Dice": 0.8806560039520264
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.7736791372299194,
|
127 |
+
"Dice": 0.8724003434181213
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv
ADDED
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
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8 |
+
29971872
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9 |
+
114.334
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+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv
ADDED
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|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task122_I2CVB
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.7253 +/- 0.0102
|
12 |
+
72.53% +/- 1.02%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerEWC
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task122_I2CVB
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.8408 +/- 0.0069
|
24 |
+
84.08% +/- 0.69%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerEWC
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.6904 +/- 0.0146
|
37 |
+
69.04% +/- 1.46%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerEWC
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8168 +/- 0.0103
|
50 |
+
81.68% +/- 1.03%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerEWC
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7797 +/- 0.0050
|
63 |
+
77.97% +/- 0.50%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerEWC
|
67 |
+
2d
|
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+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8762 +/- 0.0032
|
76 |
+
87.62% +/- 0.32%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerEWC
|
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+
2d
|
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+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.7763 +/- 0.0067
|
89 |
+
77.63% +/- 0.67%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerEWC
|
93 |
+
2d
|
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+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8740 +/- 0.0042
|
102 |
+
87.40% +/- 0.42%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
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|
1 |
+
Evaluation performed after Epoch 250, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.7253422935803732 +/- 0.010220487712351513
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.8407689332962036 +/- 0.006885132513598647
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.6904028505086899 +/- 0.014619795272973588
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8167613744735718 +/- 0.010257847355083368
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7797381778558096 +/- 0.00501543466695585
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8762302895387014 +/- 0.0031643372020166045
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.7762761882373265 +/- 0.006661105591470465
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8740331530570984 +/- 0.004218117421964211
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_48_26.txt
ADDED
@@ -0,0 +1,32 @@
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|
1 |
+
Starting...
|
2 |
+
2025-03-06 07:48:26.910773: The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2025-03-06 07:48:26.911035: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2025-03-06 07:48:26.911084: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2025-03-06 07:48:26.915812: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2025-03-06 07:48:26.916242: The split file contains 5 splits.
|
8 |
+
2025-03-06 07:48:26.916303: Desired fold for training: 0
|
9 |
+
2025-03-06 07:48:26.916351: This split has 10 training and 3 validation cases.
|
10 |
+
2025-03-06 07:48:29.068669: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2025-03-06 07:48:43.744644: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2025-03-06 07:48:43.744944: The split file contains 5 splits.
|
13 |
+
2025-03-06 07:48:43.745017: Desired fold for training: 0
|
14 |
+
2025-03-06 07:48:43.745094: This split has 15 training and 4 validation cases.
|
15 |
+
2025-03-06 07:48:48.749240: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2025-03-06 07:48:54.770425: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2025-03-06 07:48:54.771230: The split file contains 5 splits.
|
18 |
+
2025-03-06 07:48:54.771599: Desired fold for training: 0
|
19 |
+
2025-03-06 07:48:54.771936: This split has 24 training and 6 validation cases.
|
20 |
+
2025-03-06 07:48:59.541291: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2025-03-06 07:49:07.258443: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2025-03-06 07:49:07.258708: The split file contains 5 splits.
|
23 |
+
2025-03-06 07:49:07.258771: Desired fold for training: 0
|
24 |
+
2025-03-06 07:49:07.258816: This split has 25 training and 7 validation cases.
|
25 |
+
2025-03-06 07:49:11.567132: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2025-03-06 07:49:17.898690: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2025-03-06 07:49:17.899149: Summarizing the results (calculate mean and std)..
|
29 |
+
2025-03-06 07:49:17.932670: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2025-03-06 07:49:17.933257: The Evaluation took 51.02 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_250 Task121_UCL Case01 mask_1 IoU 0.7115276455879211
|
3 |
+
epoch_250 Task121_UCL Case01 mask_1 Dice 0.831453263759613
|
4 |
+
epoch_250 Task121_UCL Case32 mask_1 IoU 0.7359312176704407
|
5 |
+
epoch_250 Task121_UCL Case32 mask_1 Dice 0.8478806018829346
|
6 |
+
epoch_250 Task121_UCL Case34 mask_1 IoU 0.7285680174827576
|
7 |
+
epoch_250 Task121_UCL Case34 mask_1 Dice 0.8429729342460632
|
8 |
+
epoch_250 Task122_I2CVB Case03 mask_1 IoU 0.6925685405731201
|
9 |
+
epoch_250 Task122_I2CVB Case03 mask_1 Dice 0.8183639645576477
|
10 |
+
epoch_250 Task122_I2CVB Case08 mask_1 IoU 0.6685339212417603
|
11 |
+
epoch_250 Task122_I2CVB Case08 mask_1 Dice 0.8013429045677185
|
12 |
+
epoch_250 Task122_I2CVB Case13 mask_1 IoU 0.6908230185508728
|
13 |
+
epoch_250 Task122_I2CVB Case13 mask_1 Dice 0.8171440958976746
|
14 |
+
epoch_250 Task122_I2CVB Case15 mask_1 IoU 0.7096859216690063
|
15 |
+
epoch_250 Task122_I2CVB Case15 mask_1 Dice 0.8301945328712463
|
16 |
+
epoch_250 Task123_ISBI Case03 mask_1 IoU 0.7778480052947998
|
17 |
+
epoch_250 Task123_ISBI Case03 mask_1 Dice 0.8750444650650024
|
18 |
+
epoch_250 Task123_ISBI Case08 mask_1 IoU 0.7888094782829285
|
19 |
+
epoch_250 Task123_ISBI Case08 mask_1 Dice 0.8819379806518555
|
20 |
+
epoch_250 Task123_ISBI Case12 mask_1 IoU 0.7804704904556274
|
21 |
+
epoch_250 Task123_ISBI Case12 mask_1 Dice 0.8767014145851135
|
22 |
+
epoch_250 Task123_ISBI Case15 mask_1 IoU 0.7717055678367615
|
23 |
+
epoch_250 Task123_ISBI Case15 mask_1 Dice 0.8711442351341248
|
24 |
+
epoch_250 Task123_ISBI Case18 mask_1 IoU 0.7798032164573669
|
25 |
+
epoch_250 Task123_ISBI Case18 mask_1 Dice 0.8762802481651306
|
26 |
+
epoch_250 Task123_ISBI Case26 mask_1 IoU 0.779792308807373
|
27 |
+
epoch_250 Task123_ISBI Case26 mask_1 Dice 0.8762733936309814
|
28 |
+
epoch_250 Task124_DecathProst Case00 mask_1 IoU 0.7730327248573303
|
29 |
+
epoch_250 Task124_DecathProst Case00 mask_1 Dice 0.8719892501831055
|
30 |
+
epoch_250 Task124_DecathProst Case04 mask_1 IoU 0.7658898830413818
|
31 |
+
epoch_250 Task124_DecathProst Case04 mask_1 Dice 0.8674265742301941
|
32 |
+
epoch_250 Task124_DecathProst Case14 mask_1 IoU 0.7742968201637268
|
33 |
+
epoch_250 Task124_DecathProst Case14 mask_1 Dice 0.8727928996086121
|
34 |
+
epoch_250 Task124_DecathProst Case20 mask_1 IoU 0.7755655646324158
|
35 |
+
epoch_250 Task124_DecathProst Case20 mask_1 Dice 0.8735983371734619
|
36 |
+
epoch_250 Task124_DecathProst Case25 mask_1 IoU 0.7847083210945129
|
37 |
+
epoch_250 Task124_DecathProst Case25 mask_1 Dice 0.8793686628341675
|
38 |
+
epoch_250 Task124_DecathProst Case31 mask_1 IoU 0.7867608666419983
|
39 |
+
epoch_250 Task124_DecathProst Case31 mask_1 Dice 0.8806560039520264
|
40 |
+
epoch_250 Task124_DecathProst Case42 mask_1 IoU 0.7736791372299194
|
41 |
+
epoch_250 Task124_DecathProst Case42 mask_1 Dice 0.8724003434181213
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"epoch_250": {
|
3 |
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"Task121_UCL": {
|
4 |
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"Case01": {
|
5 |
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"mask_1": {
|
6 |
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"IoU": 0.7115276455879211,
|
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"Dice": 0.831453263759613
|
8 |
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}
|
9 |
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},
|
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"Case32": {
|
11 |
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"mask_1": {
|
12 |
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"IoU": 0.7359312176704407,
|
13 |
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"Dice": 0.8478806018829346
|
14 |
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}
|
15 |
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},
|
16 |
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"Case34": {
|
17 |
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"mask_1": {
|
18 |
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"IoU": 0.7285680174827576,
|
19 |
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"Dice": 0.8429729342460632
|
20 |
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}
|
21 |
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}
|
22 |
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},
|
23 |
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"Task122_I2CVB": {
|
24 |
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"Case03": {
|
25 |
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"mask_1": {
|
26 |
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"IoU": 0.6925685405731201,
|
27 |
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"Dice": 0.8183639645576477
|
28 |
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}
|
29 |
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},
|
30 |
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"Case08": {
|
31 |
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"mask_1": {
|
32 |
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"IoU": 0.6685339212417603,
|
33 |
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"Dice": 0.8013429045677185
|
34 |
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}
|
35 |
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},
|
36 |
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"Case13": {
|
37 |
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"mask_1": {
|
38 |
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"IoU": 0.6908230185508728,
|
39 |
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"Dice": 0.8171440958976746
|
40 |
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}
|
41 |
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},
|
42 |
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"Case15": {
|
43 |
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"mask_1": {
|
44 |
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"IoU": 0.7096859216690063,
|
45 |
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"Dice": 0.8301945328712463
|
46 |
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}
|
47 |
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}
|
48 |
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},
|
49 |
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"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
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"mask_1": {
|
52 |
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"IoU": 0.7778480052947998,
|
53 |
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"Dice": 0.8750444650650024
|
54 |
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}
|
55 |
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},
|
56 |
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"Case08": {
|
57 |
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"mask_1": {
|
58 |
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"IoU": 0.7888094782829285,
|
59 |
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"Dice": 0.8819379806518555
|
60 |
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}
|
61 |
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},
|
62 |
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"Case12": {
|
63 |
+
"mask_1": {
|
64 |
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"IoU": 0.7804704904556274,
|
65 |
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"Dice": 0.8767014145851135
|
66 |
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}
|
67 |
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},
|
68 |
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"Case15": {
|
69 |
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"mask_1": {
|
70 |
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"IoU": 0.7717055678367615,
|
71 |
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"Dice": 0.8711442351341248
|
72 |
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}
|
73 |
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},
|
74 |
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"Case18": {
|
75 |
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"mask_1": {
|
76 |
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"IoU": 0.7798032164573669,
|
77 |
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"Dice": 0.8762802481651306
|
78 |
+
}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
+
"IoU": 0.779792308807373,
|
83 |
+
"Dice": 0.8762733936309814
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.7730327248573303,
|
91 |
+
"Dice": 0.8719892501831055
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.7658898830413818,
|
97 |
+
"Dice": 0.8674265742301941
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.7742968201637268,
|
103 |
+
"Dice": 0.8727928996086121
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.7755655646324158,
|
109 |
+
"Dice": 0.8735983371734619
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.7847083210945129,
|
115 |
+
"Dice": 0.8793686628341675
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7867608666419983,
|
121 |
+
"Dice": 0.8806560039520264
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.7736791372299194,
|
127 |
+
"Dice": 0.8724003434181213
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerRW
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
|
8 |
+
29971872
|
9 |
+
114.334
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
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|
|
|
|
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|
|
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|
|
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|
|
|
|
|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerRW
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task121_UCL
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.5679 +/- 0.0215
|
12 |
+
56.79% +/- 2.15%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerRW
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task121_UCL
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.7242 +/- 0.0176
|
24 |
+
72.42% +/- 1.76%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerRW
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.8018 +/- 0.0166
|
37 |
+
80.18% +/- 1.66%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerRW
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8899 +/- 0.0103
|
50 |
+
88.99% +/- 1.03%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerRW
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7230 +/- 0.0045
|
63 |
+
72.30% +/- 0.45%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerRW
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8392 +/- 0.0030
|
76 |
+
83.92% +/- 0.30%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerRW
|
80 |
+
2d
|
81 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.6879 +/- 0.0155
|
89 |
+
68.79% +/- 1.55%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerRW
|
93 |
+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8150 +/- 0.0109
|
102 |
+
81.50% +/- 1.09%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Evaluation performed after Epoch 51, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerRW model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.5679497917493185 +/- 0.021496838576573127
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.7242078185081482 +/- 0.017586647781099356
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.8018016219139099 +/- 0.016629553445862675
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8899052739143372 +/- 0.010250715948676218
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7229857742786407 +/- 0.004478428683657694
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8392164806524912 +/- 0.0030150079496837944
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.6878991893359593 +/- 0.015492627472242974
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.814994820526668 +/- 0.010926920370879592
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_20_19_27.txt
ADDED
@@ -0,0 +1,32 @@
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|
1 |
+
Starting...
|
2 |
+
2024-10-23 20:19:27.074603: The nnUNetTrainerRW model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2024-10-23 20:19:27.074812: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2024-10-23 20:19:27.074852: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2024-10-23 20:19:27.077489: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2024-10-23 20:19:27.077574: The split file contains 5 splits.
|
8 |
+
2024-10-23 20:19:27.077612: Desired fold for training: 0
|
9 |
+
2024-10-23 20:19:27.077641: This split has 10 training and 3 validation cases.
|
10 |
+
2024-10-23 20:19:28.246869: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2024-10-23 20:19:44.414184: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2024-10-23 20:19:44.414451: The split file contains 5 splits.
|
13 |
+
2024-10-23 20:19:44.414523: Desired fold for training: 0
|
14 |
+
2024-10-23 20:19:44.414587: This split has 15 training and 4 validation cases.
|
15 |
+
2024-10-23 20:19:46.896511: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2024-10-23 20:19:52.965996: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2024-10-23 20:19:52.966220: The split file contains 5 splits.
|
18 |
+
2024-10-23 20:19:52.966271: Desired fold for training: 0
|
19 |
+
2024-10-23 20:19:52.966308: This split has 24 training and 6 validation cases.
|
20 |
+
2024-10-23 20:19:55.710758: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2024-10-23 20:20:01.841022: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2024-10-23 20:20:01.841301: The split file contains 5 splits.
|
23 |
+
2024-10-23 20:20:01.841354: Desired fold for training: 0
|
24 |
+
2024-10-23 20:20:01.841409: This split has 25 training and 7 validation cases.
|
25 |
+
2024-10-23 20:20:04.701817: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2024-10-23 20:20:11.034779: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2024-10-23 20:20:11.036031: Summarizing the results (calculate mean and std)..
|
29 |
+
2024-10-23 20:20:11.083238: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2024-10-23 20:20:11.083416: The Evaluation took 44.01 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_51 Task121_UCL Case01 mask_1 IoU 0.5391873121261597
|
3 |
+
epoch_51 Task121_UCL Case01 mask_1 Dice 0.7006129622459412
|
4 |
+
epoch_51 Task121_UCL Case32 mask_1 IoU 0.5738039612770081
|
5 |
+
epoch_51 Task121_UCL Case32 mask_1 Dice 0.7291936874389648
|
6 |
+
epoch_51 Task121_UCL Case34 mask_1 IoU 0.5908581018447876
|
7 |
+
epoch_51 Task121_UCL Case34 mask_1 Dice 0.7428168058395386
|
8 |
+
epoch_51 Task122_I2CVB Case03 mask_1 IoU 0.804739236831665
|
9 |
+
epoch_51 Task122_I2CVB Case03 mask_1 Dice 0.8918066620826721
|
10 |
+
epoch_51 Task122_I2CVB Case08 mask_1 IoU 0.7782036662101746
|
11 |
+
epoch_51 Task122_I2CVB Case08 mask_1 Dice 0.8752694129943848
|
12 |
+
epoch_51 Task122_I2CVB Case13 mask_1 IoU 0.7993401885032654
|
13 |
+
epoch_51 Task122_I2CVB Case13 mask_1 Dice 0.8884814381599426
|
14 |
+
epoch_51 Task122_I2CVB Case15 mask_1 IoU 0.8249233961105347
|
15 |
+
epoch_51 Task122_I2CVB Case15 mask_1 Dice 0.9040635824203491
|
16 |
+
epoch_51 Task123_ISBI Case03 mask_1 IoU 0.7182675004005432
|
17 |
+
epoch_51 Task123_ISBI Case03 mask_1 Dice 0.8360368609428406
|
18 |
+
epoch_51 Task123_ISBI Case08 mask_1 IoU 0.7234225273132324
|
19 |
+
epoch_51 Task123_ISBI Case08 mask_1 Dice 0.8395184874534607
|
20 |
+
epoch_51 Task123_ISBI Case12 mask_1 IoU 0.7175019383430481
|
21 |
+
epoch_51 Task123_ISBI Case12 mask_1 Dice 0.8355180621147156
|
22 |
+
epoch_51 Task123_ISBI Case15 mask_1 IoU 0.7216877937316895
|
23 |
+
epoch_51 Task123_ISBI Case15 mask_1 Dice 0.8383492231369019
|
24 |
+
epoch_51 Task123_ISBI Case18 mask_1 IoU 0.726947546005249
|
25 |
+
epoch_51 Task123_ISBI Case18 mask_1 Dice 0.8418872356414795
|
26 |
+
epoch_51 Task123_ISBI Case26 mask_1 IoU 0.7300873398780823
|
27 |
+
epoch_51 Task123_ISBI Case26 mask_1 Dice 0.8439890146255493
|
28 |
+
epoch_51 Task124_DecathProst Case00 mask_1 IoU 0.6924690008163452
|
29 |
+
epoch_51 Task124_DecathProst Case00 mask_1 Dice 0.8182944655418396
|
30 |
+
epoch_51 Task124_DecathProst Case04 mask_1 IoU 0.6663919687271118
|
31 |
+
epoch_51 Task124_DecathProst Case04 mask_1 Dice 0.7998021841049194
|
32 |
+
epoch_51 Task124_DecathProst Case14 mask_1 IoU 0.6944931149482727
|
33 |
+
epoch_51 Task124_DecathProst Case14 mask_1 Dice 0.8197060227394104
|
34 |
+
epoch_51 Task124_DecathProst Case20 mask_1 IoU 0.6918301582336426
|
35 |
+
epoch_51 Task124_DecathProst Case20 mask_1 Dice 0.8178482055664062
|
36 |
+
epoch_51 Task124_DecathProst Case25 mask_1 IoU 0.6968212723731995
|
37 |
+
epoch_51 Task124_DecathProst Case25 mask_1 Dice 0.8213254809379578
|
38 |
+
epoch_51 Task124_DecathProst Case31 mask_1 IoU 0.7096120119094849
|
39 |
+
epoch_51 Task124_DecathProst Case31 mask_1 Dice 0.830143928527832
|
40 |
+
epoch_51 Task124_DecathProst Case42 mask_1 IoU 0.6636767983436584
|
41 |
+
epoch_51 Task124_DecathProst Case42 mask_1 Dice 0.7978434562683105
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_51": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
+
"IoU": 0.5391873121261597,
|
7 |
+
"Dice": 0.7006129622459412
|
8 |
+
}
|
9 |
+
},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.5738039612770081,
|
13 |
+
"Dice": 0.7291936874389648
|
14 |
+
}
|
15 |
+
},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.5908581018447876,
|
19 |
+
"Dice": 0.7428168058395386
|
20 |
+
}
|
21 |
+
}
|
22 |
+
},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.804739236831665,
|
27 |
+
"Dice": 0.8918066620826721
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.7782036662101746,
|
33 |
+
"Dice": 0.8752694129943848
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.7993401885032654,
|
39 |
+
"Dice": 0.8884814381599426
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.8249233961105347,
|
45 |
+
"Dice": 0.9040635824203491
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
52 |
+
"IoU": 0.7182675004005432,
|
53 |
+
"Dice": 0.8360368609428406
|
54 |
+
}
|
55 |
+
},
|
56 |
+
"Case08": {
|
57 |
+
"mask_1": {
|
58 |
+
"IoU": 0.7234225273132324,
|
59 |
+
"Dice": 0.8395184874534607
|
60 |
+
}
|
61 |
+
},
|
62 |
+
"Case12": {
|
63 |
+
"mask_1": {
|
64 |
+
"IoU": 0.7175019383430481,
|
65 |
+
"Dice": 0.8355180621147156
|
66 |
+
}
|
67 |
+
},
|
68 |
+
"Case15": {
|
69 |
+
"mask_1": {
|
70 |
+
"IoU": 0.7216877937316895,
|
71 |
+
"Dice": 0.8383492231369019
|
72 |
+
}
|
73 |
+
},
|
74 |
+
"Case18": {
|
75 |
+
"mask_1": {
|
76 |
+
"IoU": 0.726947546005249,
|
77 |
+
"Dice": 0.8418872356414795
|
78 |
+
}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
+
"IoU": 0.7300873398780823,
|
83 |
+
"Dice": 0.8439890146255493
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.6924690008163452,
|
91 |
+
"Dice": 0.8182944655418396
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.6663919687271118,
|
97 |
+
"Dice": 0.7998021841049194
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.6944931149482727,
|
103 |
+
"Dice": 0.8197060227394104
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.6918301582336426,
|
109 |
+
"Dice": 0.8178482055664062
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.6968212723731995,
|
115 |
+
"Dice": 0.8213254809379578
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7096120119094849,
|
121 |
+
"Dice": 0.830143928527832
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.6636767983436584,
|
127 |
+
"Dice": 0.7978434562683105
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerRW
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
|
8 |
+
29971872
|
9 |
+
114.334
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
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nnUNetTrainerRW
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task122_I2CVB
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.5684 +/- 0.0215
|
12 |
+
56.84% +/- 2.15%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerRW
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task122_I2CVB
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.7245 +/- 0.0176
|
24 |
+
72.45% +/- 1.76%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerRW
|
28 |
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2d
|
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.8018 +/- 0.0166
|
37 |
+
80.18% +/- 1.66%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerRW
|
41 |
+
2d
|
42 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
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mask_1
|
49 |
+
0.8899 +/- 0.0103
|
50 |
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88.99% +/- 1.03%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerRW
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7230 +/- 0.0045
|
63 |
+
72.30% +/- 0.45%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerRW
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8392 +/- 0.0030
|
76 |
+
83.92% +/- 0.30%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerRW
|
80 |
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2d
|
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.6879 +/- 0.0155
|
89 |
+
68.79% +/- 1.55%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerRW
|
93 |
+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8150 +/- 0.0109
|
102 |
+
81.50% +/- 1.09%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
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|
1 |
+
Evaluation performed after Epoch 51, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerRW model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.5683601299921671 +/- 0.021467510430370717
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.7245424191157023 +/- 0.017553663031996285
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.8018016219139099 +/- 0.016629553445862675
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8899052739143372 +/- 0.010250715948676218
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7229857742786407 +/- 0.004478428683657694
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8392164806524912 +/- 0.0030150079496837944
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.6878991893359593 +/- 0.015492627472242974
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.814994820526668 +/- 0.010926920370879592
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_47_32.txt
ADDED
@@ -0,0 +1,32 @@
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|
1 |
+
Starting...
|
2 |
+
2025-03-06 07:47:32.183672: The nnUNetTrainerRW model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2025-03-06 07:47:32.183913: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2025-03-06 07:47:32.183959: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2025-03-06 07:47:32.187425: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2025-03-06 07:47:32.187541: The split file contains 5 splits.
|
8 |
+
2025-03-06 07:47:32.187592: Desired fold for training: 0
|
9 |
+
2025-03-06 07:47:32.187633: This split has 10 training and 3 validation cases.
|
10 |
+
2025-03-06 07:47:34.288141: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2025-03-06 07:47:55.350411: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2025-03-06 07:47:55.353506: The split file contains 5 splits.
|
13 |
+
2025-03-06 07:47:55.353644: Desired fold for training: 0
|
14 |
+
2025-03-06 07:47:55.353790: This split has 15 training and 4 validation cases.
|
15 |
+
2025-03-06 07:47:59.424367: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2025-03-06 07:48:06.669816: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2025-03-06 07:48:06.670118: The split file contains 5 splits.
|
18 |
+
2025-03-06 07:48:06.670180: Desired fold for training: 0
|
19 |
+
2025-03-06 07:48:06.670226: This split has 24 training and 6 validation cases.
|
20 |
+
2025-03-06 07:48:10.431160: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2025-03-06 07:48:17.440346: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2025-03-06 07:48:17.440669: The split file contains 5 splits.
|
23 |
+
2025-03-06 07:48:17.440744: Desired fold for training: 0
|
24 |
+
2025-03-06 07:48:17.440807: This split has 25 training and 7 validation cases.
|
25 |
+
2025-03-06 07:48:21.561859: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2025-03-06 07:48:28.029435: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2025-03-06 07:48:28.029662: Summarizing the results (calculate mean and std)..
|
29 |
+
2025-03-06 07:48:28.053306: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2025-03-06 07:48:28.053405: The Evaluation took 55.87 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv
ADDED
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1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_51 Task121_UCL Case01 mask_1 IoU 0.5396286249160767
|
3 |
+
epoch_51 Task121_UCL Case01 mask_1 Dice 0.7009854316711426
|
4 |
+
epoch_51 Task121_UCL Case32 mask_1 IoU 0.5742313861846924
|
5 |
+
epoch_51 Task121_UCL Case32 mask_1 Dice 0.7295387387275696
|
6 |
+
epoch_51 Task121_UCL Case34 mask_1 IoU 0.5912203788757324
|
7 |
+
epoch_51 Task121_UCL Case34 mask_1 Dice 0.7431030869483948
|
8 |
+
epoch_51 Task122_I2CVB Case03 mask_1 IoU 0.804739236831665
|
9 |
+
epoch_51 Task122_I2CVB Case03 mask_1 Dice 0.8918066620826721
|
10 |
+
epoch_51 Task122_I2CVB Case08 mask_1 IoU 0.7782036662101746
|
11 |
+
epoch_51 Task122_I2CVB Case08 mask_1 Dice 0.8752694129943848
|
12 |
+
epoch_51 Task122_I2CVB Case13 mask_1 IoU 0.7993401885032654
|
13 |
+
epoch_51 Task122_I2CVB Case13 mask_1 Dice 0.8884814381599426
|
14 |
+
epoch_51 Task122_I2CVB Case15 mask_1 IoU 0.8249233961105347
|
15 |
+
epoch_51 Task122_I2CVB Case15 mask_1 Dice 0.9040635824203491
|
16 |
+
epoch_51 Task123_ISBI Case03 mask_1 IoU 0.7182675004005432
|
17 |
+
epoch_51 Task123_ISBI Case03 mask_1 Dice 0.8360368609428406
|
18 |
+
epoch_51 Task123_ISBI Case08 mask_1 IoU 0.7234225273132324
|
19 |
+
epoch_51 Task123_ISBI Case08 mask_1 Dice 0.8395184874534607
|
20 |
+
epoch_51 Task123_ISBI Case12 mask_1 IoU 0.7175019383430481
|
21 |
+
epoch_51 Task123_ISBI Case12 mask_1 Dice 0.8355180621147156
|
22 |
+
epoch_51 Task123_ISBI Case15 mask_1 IoU 0.7216877937316895
|
23 |
+
epoch_51 Task123_ISBI Case15 mask_1 Dice 0.8383492231369019
|
24 |
+
epoch_51 Task123_ISBI Case18 mask_1 IoU 0.726947546005249
|
25 |
+
epoch_51 Task123_ISBI Case18 mask_1 Dice 0.8418872356414795
|
26 |
+
epoch_51 Task123_ISBI Case26 mask_1 IoU 0.7300873398780823
|
27 |
+
epoch_51 Task123_ISBI Case26 mask_1 Dice 0.8439890146255493
|
28 |
+
epoch_51 Task124_DecathProst Case00 mask_1 IoU 0.6924690008163452
|
29 |
+
epoch_51 Task124_DecathProst Case00 mask_1 Dice 0.8182944655418396
|
30 |
+
epoch_51 Task124_DecathProst Case04 mask_1 IoU 0.6663919687271118
|
31 |
+
epoch_51 Task124_DecathProst Case04 mask_1 Dice 0.7998021841049194
|
32 |
+
epoch_51 Task124_DecathProst Case14 mask_1 IoU 0.6944931149482727
|
33 |
+
epoch_51 Task124_DecathProst Case14 mask_1 Dice 0.8197060227394104
|
34 |
+
epoch_51 Task124_DecathProst Case20 mask_1 IoU 0.6918301582336426
|
35 |
+
epoch_51 Task124_DecathProst Case20 mask_1 Dice 0.8178482055664062
|
36 |
+
epoch_51 Task124_DecathProst Case25 mask_1 IoU 0.6968212723731995
|
37 |
+
epoch_51 Task124_DecathProst Case25 mask_1 Dice 0.8213254809379578
|
38 |
+
epoch_51 Task124_DecathProst Case31 mask_1 IoU 0.7096120119094849
|
39 |
+
epoch_51 Task124_DecathProst Case31 mask_1 Dice 0.830143928527832
|
40 |
+
epoch_51 Task124_DecathProst Case42 mask_1 IoU 0.6636767983436584
|
41 |
+
epoch_51 Task124_DecathProst Case42 mask_1 Dice 0.7978434562683105
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerRW__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_51": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
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"IoU": 0.5396286249160767,
|
7 |
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"Dice": 0.7009854316711426
|
8 |
+
}
|
9 |
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},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.5742313861846924,
|
13 |
+
"Dice": 0.7295387387275696
|
14 |
+
}
|
15 |
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},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.5912203788757324,
|
19 |
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"Dice": 0.7431030869483948
|
20 |
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}
|
21 |
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}
|
22 |
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},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.804739236831665,
|
27 |
+
"Dice": 0.8918066620826721
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.7782036662101746,
|
33 |
+
"Dice": 0.8752694129943848
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.7993401885032654,
|
39 |
+
"Dice": 0.8884814381599426
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.8249233961105347,
|
45 |
+
"Dice": 0.9040635824203491
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
52 |
+
"IoU": 0.7182675004005432,
|
53 |
+
"Dice": 0.8360368609428406
|
54 |
+
}
|
55 |
+
},
|
56 |
+
"Case08": {
|
57 |
+
"mask_1": {
|
58 |
+
"IoU": 0.7234225273132324,
|
59 |
+
"Dice": 0.8395184874534607
|
60 |
+
}
|
61 |
+
},
|
62 |
+
"Case12": {
|
63 |
+
"mask_1": {
|
64 |
+
"IoU": 0.7175019383430481,
|
65 |
+
"Dice": 0.8355180621147156
|
66 |
+
}
|
67 |
+
},
|
68 |
+
"Case15": {
|
69 |
+
"mask_1": {
|
70 |
+
"IoU": 0.7216877937316895,
|
71 |
+
"Dice": 0.8383492231369019
|
72 |
+
}
|
73 |
+
},
|
74 |
+
"Case18": {
|
75 |
+
"mask_1": {
|
76 |
+
"IoU": 0.726947546005249,
|
77 |
+
"Dice": 0.8418872356414795
|
78 |
+
}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
+
"IoU": 0.7300873398780823,
|
83 |
+
"Dice": 0.8439890146255493
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.6924690008163452,
|
91 |
+
"Dice": 0.8182944655418396
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.6663919687271118,
|
97 |
+
"Dice": 0.7998021841049194
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.6944931149482727,
|
103 |
+
"Dice": 0.8197060227394104
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.6918301582336426,
|
109 |
+
"Dice": 0.8178482055664062
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.6968212723731995,
|
115 |
+
"Dice": 0.8213254809379578
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7096120119094849,
|
121 |
+
"Dice": 0.830143928527832
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.6636767983436584,
|
127 |
+
"Dice": 0.7978434562683105
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerSequential
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
|
8 |
+
29971872
|
9 |
+
114.334
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
|
|
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|
|
|
|
|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerSequential
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task121_UCL
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.5161 +/- 0.0221
|
12 |
+
51.61% +/- 2.21%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerSequential
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task121_UCL
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.6805 +/- 0.0194
|
24 |
+
68.05% +/- 1.94%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerSequential
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.7979 +/- 0.0145
|
37 |
+
79.79% +/- 1.45%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerSequential
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8875 +/- 0.0090
|
50 |
+
88.75% +/- 0.90%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerSequential
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7147 +/- 0.0062
|
63 |
+
71.47% +/- 0.62%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerSequential
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8336 +/- 0.0042
|
76 |
+
83.36% +/- 0.42%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerSequential
|
80 |
+
2d
|
81 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.6943 +/- 0.0145
|
89 |
+
69.43% +/- 1.45%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerSequential
|
93 |
+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8195 +/- 0.0101
|
102 |
+
81.95% +/- 1.01%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
1 |
+
Evaluation performed after Epoch 48, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerSequential model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.5160952111085256 +/- 0.022080230894735927
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.6805390119552612 +/- 0.019405889573392614
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.7978666126728058 +/- 0.014453854750540503
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.887498289346695 +/- 0.008971546149061673
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7147418558597565 +/- 0.0062180651760129525
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8336283365885416 +/- 0.004227702355140445
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.6943273884909493 +/- 0.014489527589716859
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8195042525018964 +/- 0.010094991661853028
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_23_20_14_28.txt
ADDED
@@ -0,0 +1,32 @@
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1 |
+
Starting...
|
2 |
+
2024-10-23 20:14:28.521609: The nnUNetTrainerSequential model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2024-10-23 20:14:28.521819: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2024-10-23 20:14:28.521868: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2024-10-23 20:14:28.525208: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2024-10-23 20:14:28.525316: The split file contains 5 splits.
|
8 |
+
2024-10-23 20:14:28.525363: Desired fold for training: 0
|
9 |
+
2024-10-23 20:14:28.525436: This split has 10 training and 3 validation cases.
|
10 |
+
2024-10-23 20:14:30.332910: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2024-10-23 20:14:53.838543: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2024-10-23 20:14:53.838860: The split file contains 5 splits.
|
13 |
+
2024-10-23 20:14:53.838918: Desired fold for training: 0
|
14 |
+
2024-10-23 20:14:53.838975: This split has 15 training and 4 validation cases.
|
15 |
+
2024-10-23 20:14:57.471290: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2024-10-23 20:15:10.339052: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2024-10-23 20:15:10.339298: The split file contains 5 splits.
|
18 |
+
2024-10-23 20:15:10.339367: Desired fold for training: 0
|
19 |
+
2024-10-23 20:15:10.339417: This split has 24 training and 6 validation cases.
|
20 |
+
2024-10-23 20:15:13.686997: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2024-10-23 20:15:24.349030: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2024-10-23 20:15:24.349261: The split file contains 5 splits.
|
23 |
+
2024-10-23 20:15:24.349319: Desired fold for training: 0
|
24 |
+
2024-10-23 20:15:24.349364: This split has 25 training and 7 validation cases.
|
25 |
+
2024-10-23 20:15:28.011621: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2024-10-23 20:15:38.895613: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2024-10-23 20:15:38.895910: Summarizing the results (calculate mean and std)..
|
29 |
+
2024-10-23 20:15:38.932928: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2024-10-23 20:15:38.933015: The Evaluation took 70.41 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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|
1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_48 Task121_UCL Case01 mask_1 IoU 0.4850572645664215
|
3 |
+
epoch_48 Task121_UCL Case01 mask_1 Dice 0.6532505750656128
|
4 |
+
epoch_48 Task121_UCL Case32 mask_1 IoU 0.5286495089530945
|
5 |
+
epoch_48 Task121_UCL Case32 mask_1 Dice 0.6916556358337402
|
6 |
+
epoch_48 Task121_UCL Case34 mask_1 IoU 0.5345788598060608
|
7 |
+
epoch_48 Task121_UCL Case34 mask_1 Dice 0.6967108249664307
|
8 |
+
epoch_48 Task122_I2CVB Case03 mask_1 IoU 0.8004371523857117
|
9 |
+
epoch_48 Task122_I2CVB Case03 mask_1 Dice 0.8891586661338806
|
10 |
+
epoch_48 Task122_I2CVB Case08 mask_1 IoU 0.7757734060287476
|
11 |
+
epoch_48 Task122_I2CVB Case08 mask_1 Dice 0.8737301826477051
|
12 |
+
epoch_48 Task122_I2CVB Case13 mask_1 IoU 0.7989569902420044
|
13 |
+
epoch_48 Task122_I2CVB Case13 mask_1 Dice 0.8882446885108948
|
14 |
+
epoch_48 Task122_I2CVB Case15 mask_1 IoU 0.8162989020347595
|
15 |
+
epoch_48 Task122_I2CVB Case15 mask_1 Dice 0.8988596200942993
|
16 |
+
epoch_48 Task123_ISBI Case03 mask_1 IoU 0.71042400598526
|
17 |
+
epoch_48 Task123_ISBI Case03 mask_1 Dice 0.8306992650032043
|
18 |
+
epoch_48 Task123_ISBI Case08 mask_1 IoU 0.7203028798103333
|
19 |
+
epoch_48 Task123_ISBI Case08 mask_1 Dice 0.837414026260376
|
20 |
+
epoch_48 Task123_ISBI Case12 mask_1 IoU 0.7056788206100464
|
21 |
+
epoch_48 Task123_ISBI Case12 mask_1 Dice 0.8274462819099426
|
22 |
+
epoch_48 Task123_ISBI Case15 mask_1 IoU 0.7118170857429504
|
23 |
+
epoch_48 Task123_ISBI Case15 mask_1 Dice 0.8316508531570435
|
24 |
+
epoch_48 Task123_ISBI Case18 mask_1 IoU 0.7159910202026367
|
25 |
+
epoch_48 Task123_ISBI Case18 mask_1 Dice 0.8344927430152893
|
26 |
+
epoch_48 Task123_ISBI Case26 mask_1 IoU 0.724237322807312
|
27 |
+
epoch_48 Task123_ISBI Case26 mask_1 Dice 0.8400668501853943
|
28 |
+
epoch_48 Task124_DecathProst Case00 mask_1 IoU 0.701035737991333
|
29 |
+
epoch_48 Task124_DecathProst Case00 mask_1 Dice 0.8242457509040833
|
30 |
+
epoch_48 Task124_DecathProst Case04 mask_1 IoU 0.677291750907898
|
31 |
+
epoch_48 Task124_DecathProst Case04 mask_1 Dice 0.8076015710830688
|
32 |
+
epoch_48 Task124_DecathProst Case14 mask_1 IoU 0.6984915137290955
|
33 |
+
epoch_48 Task124_DecathProst Case14 mask_1 Dice 0.82248455286026
|
34 |
+
epoch_48 Task124_DecathProst Case20 mask_1 IoU 0.697597086429596
|
35 |
+
epoch_48 Task124_DecathProst Case20 mask_1 Dice 0.821864128112793
|
36 |
+
epoch_48 Task124_DecathProst Case25 mask_1 IoU 0.6942139267921448
|
37 |
+
epoch_48 Task124_DecathProst Case25 mask_1 Dice 0.8195115327835083
|
38 |
+
epoch_48 Task124_DecathProst Case31 mask_1 IoU 0.7193025946617126
|
39 |
+
epoch_48 Task124_DecathProst Case31 mask_1 Dice 0.8367376327514648
|
40 |
+
epoch_48 Task124_DecathProst Case42 mask_1 IoU 0.6723591089248657
|
41 |
+
epoch_48 Task124_DecathProst Case42 mask_1 Dice 0.8040845990180969
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_48": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
+
"IoU": 0.4850572645664215,
|
7 |
+
"Dice": 0.6532505750656128
|
8 |
+
}
|
9 |
+
},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.5286495089530945,
|
13 |
+
"Dice": 0.6916556358337402
|
14 |
+
}
|
15 |
+
},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.5345788598060608,
|
19 |
+
"Dice": 0.6967108249664307
|
20 |
+
}
|
21 |
+
}
|
22 |
+
},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.8004371523857117,
|
27 |
+
"Dice": 0.8891586661338806
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.7757734060287476,
|
33 |
+
"Dice": 0.8737301826477051
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.7989569902420044,
|
39 |
+
"Dice": 0.8882446885108948
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.8162989020347595,
|
45 |
+
"Dice": 0.8988596200942993
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
52 |
+
"IoU": 0.71042400598526,
|
53 |
+
"Dice": 0.8306992650032043
|
54 |
+
}
|
55 |
+
},
|
56 |
+
"Case08": {
|
57 |
+
"mask_1": {
|
58 |
+
"IoU": 0.7203028798103333,
|
59 |
+
"Dice": 0.837414026260376
|
60 |
+
}
|
61 |
+
},
|
62 |
+
"Case12": {
|
63 |
+
"mask_1": {
|
64 |
+
"IoU": 0.7056788206100464,
|
65 |
+
"Dice": 0.8274462819099426
|
66 |
+
}
|
67 |
+
},
|
68 |
+
"Case15": {
|
69 |
+
"mask_1": {
|
70 |
+
"IoU": 0.7118170857429504,
|
71 |
+
"Dice": 0.8316508531570435
|
72 |
+
}
|
73 |
+
},
|
74 |
+
"Case18": {
|
75 |
+
"mask_1": {
|
76 |
+
"IoU": 0.7159910202026367,
|
77 |
+
"Dice": 0.8344927430152893
|
78 |
+
}
|
79 |
+
},
|
80 |
+
"Case26": {
|
81 |
+
"mask_1": {
|
82 |
+
"IoU": 0.724237322807312,
|
83 |
+
"Dice": 0.8400668501853943
|
84 |
+
}
|
85 |
+
}
|
86 |
+
},
|
87 |
+
"Task124_DecathProst": {
|
88 |
+
"Case00": {
|
89 |
+
"mask_1": {
|
90 |
+
"IoU": 0.701035737991333,
|
91 |
+
"Dice": 0.8242457509040833
|
92 |
+
}
|
93 |
+
},
|
94 |
+
"Case04": {
|
95 |
+
"mask_1": {
|
96 |
+
"IoU": 0.677291750907898,
|
97 |
+
"Dice": 0.8076015710830688
|
98 |
+
}
|
99 |
+
},
|
100 |
+
"Case14": {
|
101 |
+
"mask_1": {
|
102 |
+
"IoU": 0.6984915137290955,
|
103 |
+
"Dice": 0.82248455286026
|
104 |
+
}
|
105 |
+
},
|
106 |
+
"Case20": {
|
107 |
+
"mask_1": {
|
108 |
+
"IoU": 0.697597086429596,
|
109 |
+
"Dice": 0.821864128112793
|
110 |
+
}
|
111 |
+
},
|
112 |
+
"Case25": {
|
113 |
+
"mask_1": {
|
114 |
+
"IoU": 0.6942139267921448,
|
115 |
+
"Dice": 0.8195115327835083
|
116 |
+
}
|
117 |
+
},
|
118 |
+
"Case31": {
|
119 |
+
"mask_1": {
|
120 |
+
"IoU": 0.7193025946617126,
|
121 |
+
"Dice": 0.8367376327514648
|
122 |
+
}
|
123 |
+
},
|
124 |
+
"Case42": {
|
125 |
+
"mask_1": {
|
126 |
+
"IoU": 0.6723591089248657,
|
127 |
+
"Dice": 0.8040845990180969
|
128 |
+
}
|
129 |
+
}
|
130 |
+
}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
|
|
|
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1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerSequential
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29971872
|
8 |
+
29971872
|
9 |
+
114.334
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerSequential
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB
|
6 |
+
0
|
7 |
+
Task122_I2CVB
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.5157 +/- 0.0221
|
12 |
+
51.57% +/- 2.21%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerSequential
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB
|
18 |
+
0
|
19 |
+
Task122_I2CVB
|
20 |
+
Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.6802 +/- 0.0194
|
24 |
+
68.02% +/- 1.94%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerSequential
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.7979 +/- 0.0145
|
37 |
+
79.79% +/- 1.45%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
+
nnUNetTrainerSequential
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
+
Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8875 +/- 0.0090
|
50 |
+
88.75% +/- 0.90%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerSequential
|
54 |
+
2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB
|
57 |
+
0
|
58 |
+
Task122_I2CVB
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7147 +/- 0.0062
|
63 |
+
71.47% +/- 0.62%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerSequential
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB
|
70 |
+
0
|
71 |
+
Task122_I2CVB
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8336 +/- 0.0042
|
76 |
+
83.36% +/- 0.42%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerSequential
|
80 |
+
2d
|
81 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB
|
83 |
+
0
|
84 |
+
Task122_I2CVB
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.6943 +/- 0.0145
|
89 |
+
69.43% +/- 1.45%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
92 |
+
nnUNetTrainerSequential
|
93 |
+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB
|
96 |
+
0
|
97 |
+
Task122_I2CVB
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8195 +/- 0.0101
|
102 |
+
81.95% +/- 1.01%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
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|
|
1 |
+
Evaluation performed after Epoch 48, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerSequential model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task122_I2CVB head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.5157383779684702 +/- 0.022051716080551308
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.6802289684613546 +/- 0.019389710279641603
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.7978666126728058 +/- 0.014453854750540503
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.887498289346695 +/- 0.008971546149061673
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7147418558597565 +/- 0.0062180651760129525
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8336283365885416 +/- 0.004227702355140445
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.6943273884909493 +/- 0.014489527589716859
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8195042525018964 +/- 0.010094991661853028
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/training_log_2025_3_6_07_45_57.txt
ADDED
@@ -0,0 +1,32 @@
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|
1 |
+
Starting...
|
2 |
+
2025-03-06 07:45:57.455874: The nnUNetTrainerSequential model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task122_I2CVB head.
|
3 |
+
2025-03-06 07:45:57.456106: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2025-03-06 07:45:57.456149: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2025-03-06 07:45:57.459600: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2025-03-06 07:45:57.459713: The split file contains 5 splits.
|
8 |
+
2025-03-06 07:45:57.459764: Desired fold for training: 0
|
9 |
+
2025-03-06 07:45:57.459808: This split has 10 training and 3 validation cases.
|
10 |
+
2025-03-06 07:45:59.356844: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2025-03-06 07:46:10.900042: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2025-03-06 07:46:10.900252: The split file contains 5 splits.
|
13 |
+
2025-03-06 07:46:10.900313: Desired fold for training: 0
|
14 |
+
2025-03-06 07:46:10.900357: This split has 15 training and 4 validation cases.
|
15 |
+
2025-03-06 07:46:15.434080: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2025-03-06 07:46:21.418514: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2025-03-06 07:46:21.418918: The split file contains 5 splits.
|
18 |
+
2025-03-06 07:46:21.418977: Desired fold for training: 0
|
19 |
+
2025-03-06 07:46:21.419022: This split has 24 training and 6 validation cases.
|
20 |
+
2025-03-06 07:46:25.312099: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2025-03-06 07:46:31.549958: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2025-03-06 07:46:31.550212: The split file contains 5 splits.
|
23 |
+
2025-03-06 07:46:31.550269: Desired fold for training: 0
|
24 |
+
2025-03-06 07:46:31.550312: This split has 25 training and 7 validation cases.
|
25 |
+
2025-03-06 07:46:35.438564: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2025-03-06 07:46:41.546088: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2025-03-06 07:46:41.546459: Summarizing the results (calculate mean and std)..
|
29 |
+
2025-03-06 07:46:41.581114: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2025-03-06 07:46:41.581191: The Evaluation took 44.13 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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|
1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_48 Task121_UCL Case01 mask_1 IoU 0.4847410023212433
|
3 |
+
epoch_48 Task121_UCL Case01 mask_1 Dice 0.6529636979103088
|
4 |
+
epoch_48 Task121_UCL Case32 mask_1 IoU 0.5282723903656006
|
5 |
+
epoch_48 Task121_UCL Case32 mask_1 Dice 0.6913327574729919
|
6 |
+
epoch_48 Task121_UCL Case34 mask_1 IoU 0.5342017412185669
|
7 |
+
epoch_48 Task121_UCL Case34 mask_1 Dice 0.6963904500007629
|
8 |
+
epoch_48 Task122_I2CVB Case03 mask_1 IoU 0.8004371523857117
|
9 |
+
epoch_48 Task122_I2CVB Case03 mask_1 Dice 0.8891586661338806
|
10 |
+
epoch_48 Task122_I2CVB Case08 mask_1 IoU 0.7757734060287476
|
11 |
+
epoch_48 Task122_I2CVB Case08 mask_1 Dice 0.8737301826477051
|
12 |
+
epoch_48 Task122_I2CVB Case13 mask_1 IoU 0.7989569902420044
|
13 |
+
epoch_48 Task122_I2CVB Case13 mask_1 Dice 0.8882446885108948
|
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epoch_48 Task122_I2CVB Case15 mask_1 IoU 0.8162989020347595
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epoch_48 Task122_I2CVB Case15 mask_1 Dice 0.8988596200942993
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epoch_48 Task123_ISBI Case03 mask_1 IoU 0.71042400598526
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epoch_48 Task123_ISBI Case03 mask_1 Dice 0.8306992650032043
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epoch_48 Task123_ISBI Case08 mask_1 IoU 0.7203028798103333
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epoch_48 Task123_ISBI Case08 mask_1 Dice 0.837414026260376
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epoch_48 Task123_ISBI Case12 mask_1 IoU 0.7056788206100464
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epoch_48 Task123_ISBI Case12 mask_1 Dice 0.8274462819099426
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epoch_48 Task123_ISBI Case15 mask_1 IoU 0.7118170857429504
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epoch_48 Task123_ISBI Case15 mask_1 Dice 0.8316508531570435
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epoch_48 Task123_ISBI Case18 mask_1 IoU 0.7159910202026367
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epoch_48 Task123_ISBI Case18 mask_1 Dice 0.8344927430152893
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epoch_48 Task123_ISBI Case26 mask_1 IoU 0.724237322807312
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epoch_48 Task123_ISBI Case26 mask_1 Dice 0.8400668501853943
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epoch_48 Task124_DecathProst Case00 mask_1 IoU 0.701035737991333
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epoch_48 Task124_DecathProst Case00 mask_1 Dice 0.8242457509040833
|
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epoch_48 Task124_DecathProst Case04 mask_1 IoU 0.677291750907898
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epoch_48 Task124_DecathProst Case04 mask_1 Dice 0.8076015710830688
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epoch_48 Task124_DecathProst Case14 mask_1 IoU 0.6984915137290955
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epoch_48 Task124_DecathProst Case14 mask_1 Dice 0.82248455286026
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epoch_48 Task124_DecathProst Case20 mask_1 IoU 0.697597086429596
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epoch_48 Task124_DecathProst Case20 mask_1 Dice 0.821864128112793
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epoch_48 Task124_DecathProst Case25 mask_1 IoU 0.6942139267921448
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epoch_48 Task124_DecathProst Case25 mask_1 Dice 0.8195115327835083
|
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epoch_48 Task124_DecathProst Case31 mask_1 IoU 0.7193025946617126
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epoch_48 Task124_DecathProst Case31 mask_1 Dice 0.8367376327514648
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epoch_48 Task124_DecathProst Case42 mask_1 IoU 0.6723591089248657
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41 |
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epoch_48 Task124_DecathProst Case42 mask_1 Dice 0.8040845990180969
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baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB/nnUNetTrainerSequential__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
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{
|
2 |
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"epoch_48": {
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3 |
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"Task121_UCL": {
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"Case32": {
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"Case34": {
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"Task122_I2CVB": {
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"Case03": {
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"Case08": {
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"mask_1": {
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"IoU": 0.7757734060287476,
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"Dice": 0.8737301826477051
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},
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"Case13": {
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"IoU": 0.7989569902420044,
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}
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},
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"Case15": {
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"mask_1": {
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"IoU": 0.8162989020347595,
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"Dice": 0.8988596200942993
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}
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}
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},
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"Task123_ISBI": {
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"Case03": {
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"mask_1": {
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"IoU": 0.71042400598526,
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"Dice": 0.8306992650032043
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},
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"Case08": {
|
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"mask_1": {
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"IoU": 0.7203028798103333,
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"Dice": 0.837414026260376
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61 |
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},
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"Case12": {
|
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"mask_1": {
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"IoU": 0.7056788206100464,
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"Dice": 0.8274462819099426
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|
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},
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"Case15": {
|
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"IoU": 0.7118170857429504,
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"Dice": 0.8316508531570435
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|
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},
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"Case18": {
|
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"IoU": 0.7159910202026367,
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"Dice": 0.8344927430152893
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|
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"Case26": {
|
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"IoU": 0.724237322807312,
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"Dice": 0.8400668501853943
|
84 |
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}
|
85 |
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}
|
86 |
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},
|
87 |
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"Task124_DecathProst": {
|
88 |
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"Case00": {
|
89 |
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"mask_1": {
|
90 |
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"IoU": 0.701035737991333,
|
91 |
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"Dice": 0.8242457509040833
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92 |
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}
|
93 |
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},
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94 |
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"Case04": {
|
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"IoU": 0.677291750907898,
|
97 |
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"Dice": 0.8076015710830688
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98 |
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}
|
99 |
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},
|
100 |
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"Case14": {
|
101 |
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|
102 |
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"IoU": 0.6984915137290955,
|
103 |
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"Dice": 0.82248455286026
|
104 |
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}
|
105 |
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},
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106 |
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"Case20": {
|
107 |
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|
108 |
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"IoU": 0.697597086429596,
|
109 |
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"Dice": 0.821864128112793
|
110 |
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}
|
111 |
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},
|
112 |
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"Case25": {
|
113 |
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"mask_1": {
|
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"IoU": 0.6942139267921448,
|
115 |
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"Dice": 0.8195115327835083
|
116 |
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|
117 |
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|
118 |
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"Case31": {
|
119 |
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"mask_1": {
|
120 |
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"IoU": 0.7193025946617126,
|
121 |
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"Dice": 0.8367376327514648
|
122 |
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|
123 |
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|
124 |
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"Case42": {
|
125 |
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|
126 |
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"IoU": 0.6723591089248657,
|
127 |
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"Dice": 0.8040845990180969
|
128 |
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}
|
129 |
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}
|
130 |
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}
|
131 |
+
}
|
132 |
+
}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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|
1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
29966112
|
4 |
+
29966112
|
5 |
+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29974752
|
8 |
+
29974752
|
9 |
+
114.345
|
10 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
6 |
+
0
|
7 |
+
Task121_UCL
|
8 |
+
Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.7254 +/- 0.0100
|
12 |
+
72.54% +/- 1.00%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerEWC
|
15 |
+
2d
|
16 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
18 |
+
0
|
19 |
+
Task121_UCL
|
20 |
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Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.8408 +/- 0.0067
|
24 |
+
84.08% +/- 0.67%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
+
nnUNetTrainerEWC
|
28 |
+
2d
|
29 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
31 |
+
0
|
32 |
+
Task122_I2CVB
|
33 |
+
Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.6890 +/- 0.0146
|
37 |
+
68.90% +/- 1.46%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
+
|
40 |
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nnUNetTrainerEWC
|
41 |
+
2d
|
42 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
44 |
+
0
|
45 |
+
Task122_I2CVB
|
46 |
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Task122_I2CVB
|
47 |
+
Dice
|
48 |
+
mask_1
|
49 |
+
0.8158 +/- 0.0102
|
50 |
+
81.58% +/- 1.02%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
+
|
53 |
+
nnUNetTrainerEWC
|
54 |
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2d
|
55 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
57 |
+
0
|
58 |
+
Task123_ISBI
|
59 |
+
Task123_ISBI
|
60 |
+
IoU
|
61 |
+
mask_1
|
62 |
+
0.7831 +/- 0.0048
|
63 |
+
78.31% +/- 0.48%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
+
nnUNetTrainerEWC
|
67 |
+
2d
|
68 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
70 |
+
0
|
71 |
+
Task123_ISBI
|
72 |
+
Task123_ISBI
|
73 |
+
Dice
|
74 |
+
mask_1
|
75 |
+
0.8784 +/- 0.0030
|
76 |
+
87.84% +/- 0.30%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerEWC
|
80 |
+
2d
|
81 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
83 |
+
0
|
84 |
+
Task123_ISBI
|
85 |
+
Task124_DecathProst
|
86 |
+
IoU
|
87 |
+
mask_1
|
88 |
+
0.7785 +/- 0.0062
|
89 |
+
77.85% +/- 0.62%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
+
|
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+
nnUNetTrainerEWC
|
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+
2d
|
94 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
96 |
+
0
|
97 |
+
Task123_ISBI
|
98 |
+
Task124_DecathProst
|
99 |
+
Dice
|
100 |
+
mask_1
|
101 |
+
0.8754 +/- 0.0039
|
102 |
+
87.54% +/- 0.39%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
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+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt
ADDED
@@ -0,0 +1,28 @@
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1 |
+
Evaluation performed after Epoch 250, trained on fold 0.
|
2 |
+
|
3 |
+
The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst has been used for this evaluation with the Task123_ISBI head. The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
|
5 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and IoU as metric:
|
6 |
+
mean (+/- std): 0.7253949046134949 +/- 0.009966595044313607
|
7 |
+
|
8 |
+
Evaluation performed for fold 0, task Task121_UCL using segmentation mask 1 and Dice as metric:
|
9 |
+
mean (+/- std): 0.8408063054084778 +/- 0.006710505585871415
|
10 |
+
|
11 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and IoU as metric:
|
12 |
+
mean (+/- std): 0.6889782398939133 +/- 0.014566028308552812
|
13 |
+
|
14 |
+
Evaluation performed for fold 0, task Task122_I2CVB using segmentation mask 1 and Dice as metric:
|
15 |
+
mean (+/- std): 0.8157638311386108 +/- 0.010237818190260378
|
16 |
+
|
17 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and IoU as metric:
|
18 |
+
mean (+/- std): 0.7831400036811829 +/- 0.0048185152163620435
|
19 |
+
|
20 |
+
Evaluation performed for fold 0, task Task123_ISBI using segmentation mask 1 and Dice as metric:
|
21 |
+
mean (+/- std): 0.8783748845259348 +/- 0.003027549389143765
|
22 |
+
|
23 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and IoU as metric:
|
24 |
+
mean (+/- std): 0.7784789289746966 +/- 0.00624781550091986
|
25 |
+
|
26 |
+
Evaluation performed for fold 0, task Task124_DecathProst using segmentation mask 1 and Dice as metric:
|
27 |
+
mean (+/- std): 0.8754296473094395 +/- 0.003946893157929156
|
28 |
+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/training_log_2024_10_24_00_12_00.txt
ADDED
@@ -0,0 +1,32 @@
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1 |
+
Starting...
|
2 |
+
2024-10-24 00:12:00.179860: The nnUNetTrainerEWC model trained on Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst will be used for this evaluation with the Task123_ISBI head.
|
3 |
+
2024-10-24 00:12:00.180093: The used checkpoint can be found at /home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model.
|
4 |
+
2024-10-24 00:12:00.180128: Start performing evaluation on fold 0 for the following tasks: Task121_UCL, Task122_I2CVB, Task123_ISBI, Task124_DecathProst.
|
5 |
+
|
6 |
+
2024-10-24 00:12:00.182848: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task121_UCL/splits_final.pkl
|
7 |
+
2024-10-24 00:12:00.182932: The split file contains 5 splits.
|
8 |
+
2024-10-24 00:12:00.182968: Desired fold for training: 0
|
9 |
+
2024-10-24 00:12:00.182997: This split has 10 training and 3 validation cases.
|
10 |
+
2024-10-24 00:12:01.339025: Performing validation with validation data from task Task121_UCL.
|
11 |
+
2024-10-24 00:12:10.788818: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task122_I2CVB/splits_final.pkl
|
12 |
+
2024-10-24 00:12:10.789061: The split file contains 5 splits.
|
13 |
+
2024-10-24 00:12:10.789128: Desired fold for training: 0
|
14 |
+
2024-10-24 00:12:10.789171: This split has 15 training and 4 validation cases.
|
15 |
+
2024-10-24 00:12:13.199727: Performing validation with validation data from task Task122_I2CVB.
|
16 |
+
2024-10-24 00:12:18.564729: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task123_ISBI/splits_final.pkl
|
17 |
+
2024-10-24 00:12:18.564902: The split file contains 5 splits.
|
18 |
+
2024-10-24 00:12:18.564943: Desired fold for training: 0
|
19 |
+
2024-10-24 00:12:18.564973: This split has 24 training and 6 validation cases.
|
20 |
+
2024-10-24 00:12:21.134351: Performing validation with validation data from task Task123_ISBI.
|
21 |
+
2024-10-24 00:12:26.472227: Using splits from existing split file: /home/lhbac/viccle/required_folder/nnUNet_preprocessed/Task124_DecathProst/splits_final.pkl
|
22 |
+
2024-10-24 00:12:26.472436: The split file contains 5 splits.
|
23 |
+
2024-10-24 00:12:26.472483: Desired fold for training: 0
|
24 |
+
2024-10-24 00:12:26.472515: This split has 25 training and 7 validation cases.
|
25 |
+
2024-10-24 00:12:29.048715: Performing validation with validation data from task Task124_DecathProst.
|
26 |
+
2024-10-24 00:12:34.618745: Finished with the evaluation on fold 0. The results can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics.csv or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json.
|
27 |
+
|
28 |
+
2024-10-24 00:12:34.618878: Summarizing the results (calculate mean and std)..
|
29 |
+
2024-10-24 00:12:34.641410: The summarized results of the evaluation on fold 0 can be found at: /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.txt or /home/lhbac/viccle/required_folder/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/summarized_val_metrics.csv.
|
30 |
+
|
31 |
+
|
32 |
+
2024-10-24 00:12:34.641473: The Evaluation took 34.46 seconds.
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.csv
ADDED
@@ -0,0 +1,41 @@
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|
1 |
+
Epoch Task subject_id seg_mask metric value
|
2 |
+
epoch_250 Task121_UCL Case01 mask_1 IoU 0.7121040225028992
|
3 |
+
epoch_250 Task121_UCL Case01 mask_1 Dice 0.8318466544151306
|
4 |
+
epoch_250 Task121_UCL Case32 mask_1 IoU 0.7361040711402893
|
5 |
+
epoch_250 Task121_UCL Case32 mask_1 Dice 0.8479953408241272
|
6 |
+
epoch_250 Task121_UCL Case34 mask_1 IoU 0.7279766201972961
|
7 |
+
epoch_250 Task121_UCL Case34 mask_1 Dice 0.8425769209861755
|
8 |
+
epoch_250 Task122_I2CVB Case03 mask_1 IoU 0.6911898255348206
|
9 |
+
epoch_250 Task122_I2CVB Case03 mask_1 Dice 0.8174006342887878
|
10 |
+
epoch_250 Task122_I2CVB Case08 mask_1 IoU 0.6671628355979919
|
11 |
+
epoch_250 Task122_I2CVB Case08 mask_1 Dice 0.8003571629524231
|
12 |
+
epoch_250 Task122_I2CVB Case13 mask_1 IoU 0.6894068121910095
|
13 |
+
epoch_250 Task122_I2CVB Case13 mask_1 Dice 0.8161525130271912
|
14 |
+
epoch_250 Task122_I2CVB Case15 mask_1 IoU 0.708153486251831
|
15 |
+
epoch_250 Task122_I2CVB Case15 mask_1 Dice 0.8291450142860413
|
16 |
+
epoch_250 Task123_ISBI Case03 mask_1 IoU 0.7813063263893127
|
17 |
+
epoch_250 Task123_ISBI Case03 mask_1 Dice 0.8772284984588623
|
18 |
+
epoch_250 Task123_ISBI Case08 mask_1 IoU 0.7920610308647156
|
19 |
+
epoch_250 Task123_ISBI Case08 mask_1 Dice 0.8839665651321411
|
20 |
+
epoch_250 Task123_ISBI Case12 mask_1 IoU 0.783444344997406
|
21 |
+
epoch_250 Task123_ISBI Case12 mask_1 Dice 0.8785744905471802
|
22 |
+
epoch_250 Task123_ISBI Case15 mask_1 IoU 0.7756404876708984
|
23 |
+
epoch_250 Task123_ISBI Case15 mask_1 Dice 0.8736458420753479
|
24 |
+
epoch_250 Task123_ISBI Case18 mask_1 IoU 0.783093273639679
|
25 |
+
epoch_250 Task123_ISBI Case18 mask_1 Dice 0.8783536553382874
|
26 |
+
epoch_250 Task123_ISBI Case26 mask_1 IoU 0.7832945585250854
|
27 |
+
epoch_250 Task123_ISBI Case26 mask_1 Dice 0.8784802556037903
|
28 |
+
epoch_250 Task124_DecathProst Case00 mask_1 IoU 0.7752766013145447
|
29 |
+
epoch_250 Task124_DecathProst Case00 mask_1 Dice 0.8734149932861328
|
30 |
+
epoch_250 Task124_DecathProst Case04 mask_1 IoU 0.7687703967094421
|
31 |
+
epoch_250 Task124_DecathProst Case04 mask_1 Dice 0.8692709803581238
|
32 |
+
epoch_250 Task124_DecathProst Case14 mask_1 IoU 0.7765285968780518
|
33 |
+
epoch_250 Task124_DecathProst Case14 mask_1 Dice 0.874208927154541
|
34 |
+
epoch_250 Task124_DecathProst Case20 mask_1 IoU 0.7776334285736084
|
35 |
+
epoch_250 Task124_DecathProst Case20 mask_1 Dice 0.8749086260795593
|
36 |
+
epoch_250 Task124_DecathProst Case25 mask_1 IoU 0.7868635654449463
|
37 |
+
epoch_250 Task124_DecathProst Case25 mask_1 Dice 0.8807203769683838
|
38 |
+
epoch_250 Task124_DecathProst Case31 mask_1 IoU 0.7879325747489929
|
39 |
+
epoch_250 Task124_DecathProst Case31 mask_1 Dice 0.8813895583152771
|
40 |
+
epoch_250 Task124_DecathProst Case42 mask_1 IoU 0.7763473391532898
|
41 |
+
epoch_250 Task124_DecathProst Case42 mask_1 Dice 0.8740940690040588
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/corresponding_head/fold_0/val_metrics_eval.json
ADDED
@@ -0,0 +1,132 @@
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|
1 |
+
{
|
2 |
+
"epoch_250": {
|
3 |
+
"Task121_UCL": {
|
4 |
+
"Case01": {
|
5 |
+
"mask_1": {
|
6 |
+
"IoU": 0.7121040225028992,
|
7 |
+
"Dice": 0.8318466544151306
|
8 |
+
}
|
9 |
+
},
|
10 |
+
"Case32": {
|
11 |
+
"mask_1": {
|
12 |
+
"IoU": 0.7361040711402893,
|
13 |
+
"Dice": 0.8479953408241272
|
14 |
+
}
|
15 |
+
},
|
16 |
+
"Case34": {
|
17 |
+
"mask_1": {
|
18 |
+
"IoU": 0.7279766201972961,
|
19 |
+
"Dice": 0.8425769209861755
|
20 |
+
}
|
21 |
+
}
|
22 |
+
},
|
23 |
+
"Task122_I2CVB": {
|
24 |
+
"Case03": {
|
25 |
+
"mask_1": {
|
26 |
+
"IoU": 0.6911898255348206,
|
27 |
+
"Dice": 0.8174006342887878
|
28 |
+
}
|
29 |
+
},
|
30 |
+
"Case08": {
|
31 |
+
"mask_1": {
|
32 |
+
"IoU": 0.6671628355979919,
|
33 |
+
"Dice": 0.8003571629524231
|
34 |
+
}
|
35 |
+
},
|
36 |
+
"Case13": {
|
37 |
+
"mask_1": {
|
38 |
+
"IoU": 0.6894068121910095,
|
39 |
+
"Dice": 0.8161525130271912
|
40 |
+
}
|
41 |
+
},
|
42 |
+
"Case15": {
|
43 |
+
"mask_1": {
|
44 |
+
"IoU": 0.708153486251831,
|
45 |
+
"Dice": 0.8291450142860413
|
46 |
+
}
|
47 |
+
}
|
48 |
+
},
|
49 |
+
"Task123_ISBI": {
|
50 |
+
"Case03": {
|
51 |
+
"mask_1": {
|
52 |
+
"IoU": 0.7813063263893127,
|
53 |
+
"Dice": 0.8772284984588623
|
54 |
+
}
|
55 |
+
},
|
56 |
+
"Case08": {
|
57 |
+
"mask_1": {
|
58 |
+
"IoU": 0.7920610308647156,
|
59 |
+
"Dice": 0.8839665651321411
|
60 |
+
}
|
61 |
+
},
|
62 |
+
"Case12": {
|
63 |
+
"mask_1": {
|
64 |
+
"IoU": 0.783444344997406,
|
65 |
+
"Dice": 0.8785744905471802
|
66 |
+
}
|
67 |
+
},
|
68 |
+
"Case15": {
|
69 |
+
"mask_1": {
|
70 |
+
"IoU": 0.7756404876708984,
|
71 |
+
"Dice": 0.8736458420753479
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"Case26": {
|
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"Task124_DecathProst": {
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"Case14": {
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|
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"Dice": 0.874208927154541
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|
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"Case20": {
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"IoU": 0.7776334285736084,
|
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"Dice": 0.8749086260795593
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|
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"Case25": {
|
113 |
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|
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|
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|
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"Case31": {
|
119 |
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|
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|
121 |
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"Dice": 0.8813895583152771
|
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|
123 |
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|
124 |
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"Case42": {
|
125 |
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|
126 |
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"IoU": 0.7763473391532898,
|
127 |
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"Dice": 0.8740940690040588
|
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}
|
129 |
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}
|
130 |
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}
|
131 |
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}
|
132 |
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}
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/model_summary.csv
ADDED
@@ -0,0 +1,10 @@
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1 |
+
network total nr. of parameters trainable parameters model size [in MB] 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
29966112
|
4 |
+
29966112
|
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+
114.312
|
6 |
+
Multi Head Network with task specific heads
|
7 |
+
29974752
|
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+
29974752
|
9 |
+
114.345
|
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+
|
baseline2/EVALUATION_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/last_head/fold_0/summarized_val_metrics.csv
ADDED
@@ -0,0 +1,104 @@
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|
1 |
+
trainer network overall train order trained on trained on fold used head for eval eval on task metric seg mask mean +/- std mean +/- std [in %] checkpoint 0
|
2 |
+
nnUNetTrainerEWC
|
3 |
+
2d
|
4 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
5 |
+
Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
6 |
+
0
|
7 |
+
Task123_ISBI
|
8 |
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Task121_UCL
|
9 |
+
IoU
|
10 |
+
mask_1
|
11 |
+
0.7254 +/- 0.0100
|
12 |
+
72.54% +/- 1.00%
|
13 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
14 |
+
nnUNetTrainerEWC
|
15 |
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2d
|
16 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
17 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
18 |
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0
|
19 |
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Task123_ISBI
|
20 |
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Task121_UCL
|
21 |
+
Dice
|
22 |
+
mask_1
|
23 |
+
0.8408 +/- 0.0067
|
24 |
+
84.08% +/- 0.67%
|
25 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
26 |
+
|
27 |
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nnUNetTrainerEWC
|
28 |
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2d
|
29 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
30 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
31 |
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0
|
32 |
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Task123_ISBI
|
33 |
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Task122_I2CVB
|
34 |
+
IoU
|
35 |
+
mask_1
|
36 |
+
0.6890 +/- 0.0146
|
37 |
+
68.90% +/- 1.46%
|
38 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
39 |
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|
40 |
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nnUNetTrainerEWC
|
41 |
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2d
|
42 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
43 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
44 |
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0
|
45 |
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Task123_ISBI
|
46 |
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Task122_I2CVB
|
47 |
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Dice
|
48 |
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mask_1
|
49 |
+
0.8158 +/- 0.0102
|
50 |
+
81.58% +/- 1.02%
|
51 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
52 |
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|
53 |
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nnUNetTrainerEWC
|
54 |
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2d
|
55 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
56 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
57 |
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0
|
58 |
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Task123_ISBI
|
59 |
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Task123_ISBI
|
60 |
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IoU
|
61 |
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mask_1
|
62 |
+
0.7831 +/- 0.0048
|
63 |
+
78.31% +/- 0.48%
|
64 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
65 |
+
|
66 |
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nnUNetTrainerEWC
|
67 |
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2d
|
68 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
69 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
70 |
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0
|
71 |
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Task123_ISBI
|
72 |
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Task123_ISBI
|
73 |
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Dice
|
74 |
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mask_1
|
75 |
+
0.8784 +/- 0.0030
|
76 |
+
87.84% +/- 0.30%
|
77 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
78 |
+
|
79 |
+
nnUNetTrainerEWC
|
80 |
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2d
|
81 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
82 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
83 |
+
0
|
84 |
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Task123_ISBI
|
85 |
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Task124_DecathProst
|
86 |
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IoU
|
87 |
+
mask_1
|
88 |
+
0.7785 +/- 0.0062
|
89 |
+
77.85% +/- 0.62%
|
90 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
91 |
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|
92 |
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nnUNetTrainerEWC
|
93 |
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2d
|
94 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI -- Task124_DecathProst
|
95 |
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Task121_UCL -- Task122_I2CVB -- Task123_ISBI
|
96 |
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0
|
97 |
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Task123_ISBI
|
98 |
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Task124_DecathProst
|
99 |
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Dice
|
100 |
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mask_1
|
101 |
+
0.8754 +/- 0.0039
|
102 |
+
87.54% +/- 0.39%
|
103 |
+
/home/lhbac/viccle/required_folder/RESULTS_FOLDER_PRETRAINED_LIFELONG/nnUNet_ext/2d/Task121_UCL_Task122_I2CVB_Task123_ISBI_Task124_DecathProst/Task121_UCL_Task122_I2CVB_Task123_ISBI/nnUNetTrainerEWC__nnUNetPlansv2.1/Generic_UNet/SEQ/fold_0/model_final_checkpoint.model
|
104 |
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