import csv from pathlib import Path import torchvision def main(roco_root: str): root = Path(roco_root) check_images( root / 'train/radiology', 'traindata.csv', 'train.csv' ) check_images( root / 'validate/radiology', 'valdata.csv', 'validate.csv' ) check_images( root / 'test/radiology', 'testdata.csv', 'test.csv' ) def check_images(split_dir: Path, input_csv: str, target_output: str): with open(split_dir / input_csv, 'r') as buf: csv_reader = csv.reader(buf) next(csv_reader, None) filtered_csv = [] for row in csv_reader: image_path = split_dir / 'images' / row[1] try: torchvision.io.read_image(str(image_path)) except: continue filtered_csv.append(row) with open(split_dir / target_output, 'w') as csvfile: spamwriter = csv.writer(csvfile) for row in filtered_csv: spamwriter.writerow(row) if __name__ == '__main__': main('/home/shpotes/medclip/data/roco-dataset') {mode:full,isActive:false}