Alpha diversity metric Observed species 0.314 0.529 0.617 0.504 0.225 0.258 Chao1 index 0.304 0.516 0.593 0.482 0.215 0.251 PD_whole_tree 0.297 0.467 0.462 0.532 0.204 0.278 Shannon index 0.662 0.477 0.698 0.915 0.423 0.461 * P-values from Spearman correlation tests are presented. Figure S1. First three principal components (PC1, PC2, PC3) of Bray Curtis dissimilarity, unweighted UniFrac distance, and weighted UniFrac distance for all specimens. Distinct and tightly clustered distributions are evident for the three types of quality control (QC) specimens: green, water; light blue, Chemostat A; and dark blue, Chemostat B. The 96 specimens are yellow (unsorted), red (IgA-negative), and orange (IgA-positive).
Alpha diversity metric Observed species 0.314 0.529 0.617 0.504 0.225 0.258 Chao1 index 0.304 0.516 0.593 0.482 0.215 0.251 PD_whole_tree 0.297 0.467 0.462 0.532 0.204 0.278 Shannon index 0.662 0.477 0.698 0.915 0.423 0.461 * P-values from Spearman correlation tests are presented. Figure S1. First three principal components (PC1, PC2, PC3) of Bray Curtis dissimilarity, unweighted UniFrac distance, and weighted UniFrac distance for all specimens. Distinct and tightly clustered distributions are evident for the three types of quality control (QC) specimens: green, water; light blue, Chemostat A; and dark blue, Chemostat B. The 96 specimens are yellow (unsorted), red (IgA-negative), and orange (IgA-positive).
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