A summary of systems used for text mining of cancer-related information System Document Study Disease NLP task Methods Resources Framework Tools Licence name type [5] colorectal colonoscopy and IE rule-based UMLS GATE cancer pathology reports classification [14] breast cancer mammography classification linear least BI-RADS reports squares fit [16] MedLEE breast cancer surgical pathology IE rule-based patented reports [17] breast cancer mammography classification Bayesian network BI-RADS reports [18] breast cancer mammography classification rule-based BI-RADS reports UMLS [19] breast cancer mammography classification inductive logic reports programming [20] ClearForest breast cancer pathology reports IE ICD-9 commercial CPT [21] SCENT breast cancer pathology reports classification rule-based SNOMED CT SAS freely prostate available cancer [23] MedTAS/P colon cancer pathology reports IE rule-based ICD-O UIMA open ML FMA source [25] colorectal EMRs IE rule-based cancer [26] ARC colorectal, imaging and IR CRF UMLS UIMA MALLET open prostate and pathology reports maximum ICD-9 source lung cancer entropy [28] colorectal EMRs IE rule-based cancer
A summary of systems used for text mining of cancer-related information Study System name Disease Document type NLP task Methods Resources Framework Tools Licence [5] colorectal cancer colonoscopy and pathology reports IE classification rule-based UMLS GATE [14] breast cancer mammography reports classification linear least squares fit BI-RADS [16] MedLEE breast cancer surgical pathology reports IE rule-based patented [17] breast cancer mammography reports classification Bayesian network BI-RADS [18] breast cancer mammography reports classification rule-based BI-RADS UMLS [19] breast cancer mammography reports classification inductive logic programming [20] ClearForest breast cancer pathology reports IE ICD-9 CPT commercial [21] SCENT breast cancer prostate cancer pathology reports classification rule-based SNOMED CT SAS freely available [23] MedTAS/P colon cancer pathology reports IE rule-based ML ICD-O FMA UIMA open source [25] colorectal cancer EMRs IE rule-based [26] ARC colorectal, prostate and lung cancer imaging and pathology reports IR CRF maximum entropy UMLS ICD-9 UIMA MALLET open source [28] colorectal cancer EMRs IE rule-based
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