1/20,1/22 4 Theory lecture DNA sequencing, Annotation, Annotation tools – 1/27,1/29 Theory lecture Introduction to Phage genomes – READING description of the mycobacteriophage L5 genome 2/3, 2/5 – 6 Theory lecture - Introduction to genomes LAB - Annotation 2/10, 2/12 7 Theory lecture - Introduction to Phage genomes READING description of the insights that have come from hunting 2/17, – LAB - Annotation 2/19 8 Theory lecture - Comparative genomics and evolution LAB Continue Annotation 2/24, – Mid-Term Problem Set 2/26 9 SPRING 3/3, 3/5 10 Theory lecture - Comparative genomics and evolution 3/10, LAB Continue Annotation – 3/12 11 LAB Continue Annotation – 3/17, 3/19 12 LAB Continue Annotation – 3/24 ,3/26 13 LAB Continue Annotation – 3/31, 4/2 14 LAB Continue Annotation – 4/7, 4/9 15 LAB Wrap up annotation efforts – 4/14, 4/16 16 FINAL Take home Exam Due ALL LAB PROGRESS REPORT revisions are due 4/21 ACTIVITY Wrap up annotation efforts, send annotated genome for approval – Conduct in Class Participate in discussions and ask questions. Be prepared to discuss readings; most readings are assigned the week before they will be covered. Please be courteous to other students during the class, but make sure you engage with the both the other students and the instructor.
1/20,1/22 4 1/27,1/29 Theory lecture – DNA sequencing, Annotation, Annotation tools 2/3, 2/5 Theory lecture – Introduction to Phage genomes READING – description of the mycobacteriophage L5 genome 6 2/10, 2/12 Theory lecture - Introduction to genomes LAB - Annotation 7 2/17, 2/19 Theory lecture - Introduction to Phage genomes READING – description of the insights that have come from hunting LAB - Annotation 8 2/24, 2/26 Theory lecture - Comparative genomics and evolution LAB – Continue Annotation Mid-Term Problem Set 9 3/3, 3/5 SPRING 10 3/10, 3/12 Theory lecture - Comparative genomics and evolution LAB – Continue Annotation 11 3/17, 3/19 LAB – Continue Annotation 12 3/24 ,3/26 LAB – Continue Annotation 13 3/31, 4/2 LAB – Continue Annotation 14 4/7, 4/9 LAB – Continue Annotation 15 4/14, 4/16 LAB – Wrap up annotation efforts 16 4/21 FINAL Take home Exam Due ALL LAB PROGRESS REPORT revisions are due ACTIVITY – Wrap up annotation efforts, send annotated genome for approval Conduct in Class Participate in discussions and ask questions. Be prepared to discuss readings; most readings are assigned the week before they will be covered. Please be courteous to other students during the class, but make sure you engage with the both the other students and the instructor.
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