11 NA12878 - Ion 21GB FASTQ SRX517292 Torrent 12 NA12878 Illumina 90GB FASTQ 39x We select robot 2 since it has the Garvan 8 binned highest coverage replicate J Bacteria 13 ERX593919 Oxford 60 GB Gzipped http://www.ebi.ac.uk/ena/data/view/ERX593919 Ecoli_R7_NONI (E. Coli) Nanopore Fast5 Present both as Fast5 and FASTQ to 1GB FASTQ 14 ERX593921 Oxford 46 GB Gzipped http://www.ebi.ac.uk/ena/data/view/ERX593921 Ecoli_R73 (E. Coli) Nanopore Fast5 Present both as Fast5 and FASTQ to 600MB FASTQ 15 SRR1284073 PacBio 2.2 GB SRA 16 DH10B Illumina 1.3 GB BAM Used in the Deez paper. (E.Coli) MiSeq MiSeq_Ecoli_DH10B_110721_PF.bam DH10B_WithDup_FinalEdit_validated.FASTA 17 ERA269036 Illumina 2.3 GB BAM Used in the Scramble paper. 9799_7#3.bam (E.Coli) 18 SRX089128 Illumina 1.65 FASTQ S. cerevisiae GA GB Insects
11 NA12878 - SRX517292 Ion Torrent 21GB FASTQ 12 NA12878 Garvan replicate J Illumina 8 binned 90GB FASTQ 39x We select robot 2 since it has the highest coverage Bacteria 13 ERX593919 (E. Coli) Oxford Nanopore 60 GB Gzipped Fast5 to 1GB FASTQ http://www.ebi.ac.uk/ena/data/view/ERX593919 Ecoli_R7_NONI Present both as Fast5 and FASTQ 14 ERX593921 (E. Coli) Oxford Nanopore 46 GB Gzipped Fast5 to 600MB FASTQ http://www.ebi.ac.uk/ena/data/view/ERX593921 Ecoli_R73 Present both as Fast5 and FASTQ 15 SRR1284073 PacBio 2.2 GB SRA 16 DH10B (E.Coli) Illumina MiSeq 1.3 GB BAM MiSeq_Ecoli_DH10B_110721_PF.bam DH10B_WithDup_FinalEdit_validated.FASTA Used in the Deez paper. 17 ERA269036 9799_7#3.bam (E.Coli) Illumina 2.3 GB BAM Used in the Scramble paper. 18 SRX089128 S. cerevisiae Illumina GA 1.65 GB FASTQ Insects
w16726_w155_GenomeCompression_Database.docx