OUTPUT FILE FORMAT Column header Description Required format SNP label for the variant in format SNP CHR:POS CHR:POS beginning with “chr” rsID rs number if available rs number Orientation of the site to the human STRAND + or - genome strand used Allele at this site to which the effect has EFFECT_ALLELE A, C, G, T been estimated Allele at this site which is not the NON_EFFECT_ALLELE A, C, G, T EFFECT_ALLELE N numeric Total number of samples analyzed Frequency with 3 digits to the right EAF Allele frequency of the EFFECT_ALLELE of the decimal BETA 3 digits to the of the decimal Estimate of the effect size Estimated standard error on the estimate SE 4 digits to the right of the decimal of the effect size
OUTPUT FILE FORMAT Column header Description Required format SNP SNP label for the variant in format CHR:POS beginning with “chr” CHR:POS rsID rs number rs number if available STRAND Orientation of the site to the human genome strand used + or - EFFECT_ALLELE Allele at this site to which the effect has been estimated A, C, G, T NON_EFFECT_ALLELE Allele at this site which is not the EFFECT_ALLELE A, C, G, T N Total number of samples analyzed numeric EAF Allele frequency of the EFFECT_ALLELE Frequency with 3 digits to the right of the decimal BETA Estimate of the effect size 3 digits to the of the decimal SE Estimated standard error on the estimate of the effect size 4 digits to the right of the decimal
SOP_ENIGMA_EEG_Analysis_plan_20150327.docx