Table S4 Summary of genes affected by sequence variation within each Bayes confidence interval for cross 3D1 x 3D7 for the QTLs associated with the yeast/hyphae dimorphism, excluding genes containing no sequence variation or with synonymous SNPs only. Estimated Estimated Number Number affected Percentage Estimated Percentage Bayes Number genes sequence confidence of of position genes position Number with LOD position sequence genes of of of Chromosome variations sequence total unknown score total with P-value (kb) variations (%) Trait of affected of of interval of sequence peaking genes unknown distal b at a genes variation proximal peak b variations function by marker affected length (%) b marker sequence variation function affected b marker (kb) b (kb) b by (kb) a Yeast/hyphae (22°C) 3 2281 8.89 < 0.001 2036 3094 1058 1310 351 266 76 108 41 Yeast/hyphae (22°C) 7 1070 3.42 0.036 943 1601 657 687 209 149 71 60 40 Yeast/hyphae (22°C) 11 571 11.15 < 0.001 447 657 211 161 68 43 63 16 37 Yeast/hyphae (15°C) 1 284 4.5 0.003 262 343 81 100 23 15 65 5 33 Yeast/hyphae (15°C) 3 1730 10.15 < 0.001 1709 1775 66 80 21 15 71 4 27 Yeast/hyphae (15°C) 11 535 4.86 0.001 437 647 210 151 68 43 63 20 47 a Markers flanking the 95% Bayes confidence interval of the associated QTL. b Numbers refer to within the 95% Bayes confidence interval of the associated QTL.
Table S4 Summary of genes affected by sequence variation within each Bayes confidence interval for cross 3D1 x 3D7 for the QTLs associated with the yeast/hyphae dimorphism, excluding genes containing no sequence variation or with synonymous SNPs only. Trait Chromosome Estimated position of peaking marker (kb) LOD score at peak P-value Estimated position of proximal marker (kb) a Estimated position of distal marker (kb) a Bayes confidence interval length (kb) Number of sequence variations b Number of genes b Number of genes affected by sequence variations b Percentage of total genes affected by sequence variations (%) b Number of sequence variation affected genes with unknown function b Percentage of total sequence variation affected genes with unknown function (%) b Yeast/hyphae (22°C) 3 2281 8.89 < 0.001 2036 3094 1058 1310 351 266 76 108 41 Yeast/hyphae (22°C) 7 1070 3.42 0.036 943 1601 657 687 209 149 71 60 40 Yeast/hyphae (22°C) 11 571 11.15 < 0.001 447 657 211 161 68 43 63 16 37 Yeast/hyphae (15°C) 1 284 4.5 0.003 262 343 81 100 23 15 65 5 33 Yeast/hyphae (15°C) 3 1730 10.15 < 0.001 1709 1775 66 80 21 15 71 4 27 Yeast/hyphae (15°C) 11 535 4.86 0.001 437 647 210 151 68 43 63 20 47 a Markers flanking the 95% Bayes confidence interval of the associated QTL. b Numbers refer to within the 95% Bayes confidence interval of the associated QTL.
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