release databases listed in the CV, otherwise a userParam should be used. Type: ParamType Attributes: none Subelements: <DatabaseName> Example <userParam Context: name="SwissProtHuman554TD_20080526.fasta"/> </DatabaseName> Path /MzQuantML/InputFiles/SearchDatabase/DatabaseName SHOULD supply a term of (database name) only once e.g.: (database nr) cvParam e.g.: (database UniProtKB/Swiss-Prot) e.g.: (database IPI_human) Mapping e.g.: (database IPI_mouse) Rules: e.g.: (database IPI_rat) e.g.: (database IPI_zebrafish) e.g.: (database IPI_chicken) e.g.: (database IPI_cow) e.g.: (database IPI_arabidopsis) e.g.: (database UniProtKB/TrEMBL) <cvParam cvRef="PSI-MS" accession="MS:1001013" Example name="database name" value="SwissProtHuman554TD_20080526.fasta"/> cvParams: <cvParam cvRef="MS" accession="MS:1001084" name="database nr"/> Example <userParam name="sgd_orfs_plus_ups_prots.fasta"/> <userParam name="itraq_db.fasta"/> userParams: <userParam name="Pseudomonas.fasta"/> Element <DataMatrix> A matrix of data stored in rows and columns, as Definition: defined in the parent QuantLayer. Type: DataMatrixType Attributes: none Subelements:
release databases listed in the CV, otherwise a userParam should be used. Type: ParamType Attributes: none Subelements: Example Context: <DatabaseName> <userParam name="SwissProtHuman554TD_20080526.fasta"/> </DatabaseName> cvParam Mapping Rules: Path /MzQuantML/InputFiles/SearchDatabase/DatabaseName SHOULD supply a term of (database name) only once e.g.: (database nr) e.g.: (database UniProtKB/Swiss-Prot) e.g.: (database IPI_human) e.g.: (database IPI_mouse) e.g.: (database IPI_rat) e.g.: (database IPI_zebrafish) e.g.: (database IPI_chicken) e.g.: (database IPI_cow) e.g.: (database IPI_arabidopsis) e.g.: (database UniProtKB/TrEMBL) Example cvParams: <cvParam cvRef="PSI-MS" accession="MS:1001013" name="database name" value="SwissProtHuman554TD_20080526.fasta"/> <cvParam cvRef="MS" accession="MS:1001084" name="database nr"/> Example userParams: <userParam name="sgd_orfs_plus_ups_prots.fasta"/> <userParam name="itraq_db.fasta"/> <userParam name="Pseudomonas.fasta"/> Element <DataMatrix> Definition: A matrix of data stored in rows and columns, as defined in the parent QuantLayer. Type: DataMatrixType Attributes: none Subelements: